Wall clock time and date at job start Tue Mar 31 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47192 * 2 1 4 4 N 1.40445 * 126.82571 * 275.17620 * 3 2 1 5 5 C 1.30707 * 106.79318 * 179.97438 * 4 3 2 6 6 N 1.33242 * 108.94713 * 359.75787 * 5 4 3 7 7 C 1.30827 * 109.82732 * 0.40401 * 6 5 4 8 8 C 1.50699 * 125.96019 * 179.86659 * 7 6 5 9 9 N 1.46900 * 109.47409 * 94.80208 * 8 7 6 10 10 C 1.47960 * 111.00391 * 184.72184 * 9 8 7 11 11 C 1.53935 * 86.18168 * 137.58348 * 10 9 8 12 12 C 1.52997 * 113.72940 * 221.81518 * 11 10 9 13 13 N 1.46508 * 109.47011 * 183.09982 * 12 11 10 14 14 C 1.34768 * 119.99853 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00584 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99741 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47032 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99865 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00307 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99844 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99854 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46926 * 90.00171 * 22 20 18 24 24 H 1.48493 * 109.46846 * 210.00133 * 22 20 18 25 25 H 1.48497 * 109.47195 * 330.00579 * 22 20 18 26 26 C 1.48308 * 111.00421 * 284.07377 * 9 8 7 27 27 H 1.08995 * 109.47381 * 59.99662 * 1 2 3 28 28 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46589 * 299.99536 * 1 2 3 30 30 H 1.09006 * 109.46589 * 240.00464 * 2 1 3 31 31 H 1.08995 * 109.47381 * 120.00338 * 2 1 3 32 32 H 1.08005 * 125.52551 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47421 * 334.80433 * 8 7 6 34 34 H 1.08998 * 109.47136 * 214.80314 * 8 7 6 35 35 H 1.08997 * 113.75856 * 23.26099 * 10 9 8 36 36 H 1.08999 * 113.75690 * 251.90215 * 10 9 8 37 37 H 1.09002 * 113.73151 * 90.63763 * 11 10 9 38 38 H 1.08992 * 109.47461 * 303.09814 * 12 11 10 39 39 H 1.09006 * 109.47333 * 63.10331 * 12 11 10 40 40 H 0.97004 * 119.99754 * 359.97438 * 13 12 11 41 41 H 1.09002 * 109.47107 * 299.99944 * 16 14 13 42 42 H 1.08994 * 109.47188 * 59.99704 * 16 14 13 43 43 H 0.97001 * 120.00009 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.85282 * 108.14129 * 26 9 8 45 45 H 1.08998 * 113.75778 * 336.67912 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2034 2.2087 -1.1196 5 6 2.6503 3.3532 -0.6737 6 7 2.7499 3.2912 0.6536 7 6 2.3779 2.1087 1.0718 8 6 2.3509 1.6451 2.5054 9 7 1.0044 1.8424 3.0586 10 6 0.9677 1.5034 4.4984 11 6 0.1084 2.7692 4.6691 12 6 0.4725 3.5988 5.9020 13 7 -0.4457 4.7349 6.0147 14 6 -0.3145 5.6090 7.0320 15 8 0.5640 5.4555 7.8540 16 6 -1.2594 6.7772 7.1483 17 16 -0.8286 7.7589 8.6067 18 6 -2.0552 9.0192 8.5004 19 1 -2.7718 9.0087 7.6924 20 6 -2.1000 10.0263 9.4546 21 7 -3.0168 10.9676 9.3754 22 14 -0.8602 10.0451 10.8516 23 1 0.3345 10.8267 10.4428 24 1 -1.4745 10.6705 12.0502 25 1 -0.4549 8.6530 11.1725 26 6 0.7613 3.2721 3.3690 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.8947 4.2115 -1.2820 33 1 3.0705 2.2211 3.0872 34 1 2.6107 0.5875 2.5503 35 1 1.9394 1.5629 4.9884 36 1 0.4351 0.5781 4.7182 37 1 -0.9627 2.5875 4.5804 38 1 0.3934 2.9778 6.7942 39 1 1.4943 3.9659 5.8042 40 1 -1.1477 4.8582 5.3566 41 1 -1.1810 7.3981 6.2558 42 1 -2.2809 6.4099 7.2467 43 1 -3.0483 11.6712 10.0424 44 1 0.0640 3.7588 2.6871 45 1 1.6729 3.8477 3.5294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714961326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:13 Heat of formation + Delta-G solvation = 87.723270 kcal Electronic energy + Delta-G solvation = -25932.793173 eV Core-core repulsion = 22114.732976 eV Total energy + Delta-G solvation = -3818.060197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.50844 -40.55688 -39.04564 -35.52553 -34.82920 -32.95185 -32.43102 -30.92152 -30.42525 -29.22452 -26.82804 -26.58344 -25.59166 -24.55602 -23.30025 -22.13732 -20.70250 -20.50338 -19.89538 -17.90124 -17.57906 -16.74321 -16.65639 -16.31726 -15.86741 -15.55808 -15.35400 -15.13262 -14.96364 -14.76058 -14.51509 -14.31170 -13.80071 -13.40398 -13.31709 -13.18424 -13.17920 -12.79276 -12.69683 -12.43118 -12.35770 -11.96931 -11.77747 -11.61585 -11.33406 -11.25148 -11.06985 -10.99976 -10.60057 -10.34447 -10.10774 -9.96574 -9.85038 -9.56821 -9.40871 -9.02001 -8.96413 -8.49624 -6.91211 -6.28236 -3.99949 1.19494 1.89840 2.55636 2.76021 2.97255 3.28067 3.32045 3.34237 3.50941 3.60713 3.69490 3.99400 4.03149 4.23648 4.26550 4.33837 4.47989 4.51586 4.66232 4.71163 4.78249 4.82079 4.88137 4.95197 5.00023 5.10784 5.12748 5.16341 5.28461 5.32666 5.34234 5.45306 5.59985 5.65040 5.66165 5.77653 5.86466 5.94022 6.02333 6.08996 6.34023 6.41977 6.50872 7.59353 7.75370 7.94808 8.42442 8.48233 9.17912 10.80964 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.001786 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.591615 B =15675.005858 C =16081.807740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.365 5.365 4 N -0.321 5.321 5 C 0.199 3.801 6 N -0.539 5.539 7 C 0.286 3.714 8 C 0.096 3.904 9 N -0.478 5.478 10 C 0.016 3.984 11 C -0.127 4.127 12 C 0.130 3.870 13 N -0.736 5.736 14 C 0.531 3.469 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.014 3.986 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.217 0.783 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -26.173 -19.074 33.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 N -0.156 5.156 4 N -0.149 5.149 5 C -0.104 4.104 6 N -0.267 5.267 7 C 0.009 3.991 8 C -0.035 4.035 9 N -0.201 5.201 10 C -0.113 4.113 11 C -0.147 4.147 12 C 0.006 3.994 13 N -0.390 5.390 14 C 0.317 3.683 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.114 4.114 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.233 0.767 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.797 -26.608 -18.668 33.948 hybrid contribution -0.424 0.812 -0.275 0.956 sum 9.373 -25.796 -18.943 33.349 Atomic orbital electron populations 1.22153 0.93340 1.03239 1.03946 1.21761 0.96209 0.77189 1.04253 1.50403 1.48059 1.13012 1.04157 1.78042 1.24380 1.03894 1.08593 1.25958 0.97485 0.96537 0.90414 1.70489 1.25736 1.18710 1.11761 1.23949 0.95070 0.87877 0.92164 1.21123 0.93678 1.02062 0.86632 1.68676 1.23039 1.13155 1.15257 1.23945 1.00223 0.99139 0.88012 1.23250 1.01510 0.95569 0.94334 1.21294 0.93850 0.87262 0.97035 1.45927 1.35600 1.27665 1.29813 1.20280 0.84886 0.82813 0.80358 1.90699 1.34196 1.74135 1.40481 1.23280 1.01453 0.97687 1.05070 1.84780 1.46151 1.30059 1.30616 1.22319 1.17140 1.10871 1.16555 0.89381 1.24722 0.95310 0.94013 0.97320 1.69940 1.33172 1.12976 1.35591 0.86727 0.81726 0.81339 0.82013 1.19206 1.19960 1.15932 1.24162 1.01154 0.90173 0.95952 0.91919 0.90496 0.90570 0.88902 0.88544 0.76676 0.89904 0.88423 0.90192 0.88408 0.87418 0.91141 0.91433 0.76588 0.88480 0.88464 0.91951 0.89282 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.16 0.38 -0.45 16 2 C 0.13 0.64 7.07 -4.04 -0.03 0.61 16 3 N -0.37 -3.12 3.64 -58.34 -0.21 -3.34 16 4 N -0.32 -3.35 12.70 29.29 0.37 -2.98 16 5 C 0.20 1.94 13.03 -91.82 -1.20 0.75 16 6 N -0.54 -5.80 11.19 -11.97 -0.13 -5.93 16 7 C 0.29 2.54 7.19 -155.70 -1.12 1.42 16 8 C 0.10 0.58 4.99 -4.98 -0.02 0.56 16 9 N -0.48 -2.96 6.22 -239.41 -1.49 -4.45 16 10 C 0.02 0.08 7.55 -2.76 -0.02 0.06 16 11 C -0.13 -0.82 3.93 -89.69 -0.35 -1.17 16 12 C 0.13 1.24 5.51 -4.04 -0.02 1.22 16 13 N -0.74 -8.67 5.56 -60.29 -0.33 -9.01 16 14 C 0.53 9.14 7.85 -10.99 -0.09 9.05 16 15 O -0.52 -11.00 15.86 5.56 0.09 -10.91 16 16 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 17 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 18 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 22 Si 0.86 21.79 27.74 -169.99 -4.71 17.08 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 C 0.01 0.10 7.21 -2.56 -0.02 0.09 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.27 7.07 -51.93 -0.37 -0.09 16 32 H 0.22 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.08 0.51 7.68 -51.93 -0.40 0.11 16 34 H 0.10 0.37 7.23 -51.93 -0.38 -0.01 16 35 H 0.08 0.35 7.83 -51.93 -0.41 -0.06 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 40 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.71 7.48 -51.93 -0.39 0.32 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -36.99 392.10 -10.71 -47.70 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.92 Total: -0.64 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.05 Total: -2.03 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -1.02 Total: -51.51 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.99 -10.71 -47.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714961326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.421 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds