Wall clock time and date at job start Tue Mar 31 2020 22:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47192 * 2 1 4 4 N 1.40445 * 126.82571 * 275.17620 * 3 2 1 5 5 C 1.30707 * 106.79318 * 179.97438 * 4 3 2 6 6 N 1.33242 * 108.94713 * 359.75787 * 5 4 3 7 7 C 1.30827 * 109.82732 * 0.40401 * 6 5 4 8 8 C 1.50699 * 125.96019 * 179.86659 * 7 6 5 9 9 N 1.46900 * 109.47409 * 94.80208 * 8 7 6 10 10 C 1.47960 * 111.00391 * 184.72184 * 9 8 7 11 11 C 1.53935 * 86.18168 * 137.58348 * 10 9 8 12 12 C 1.52997 * 113.72940 * 221.81518 * 11 10 9 13 13 N 1.46508 * 109.47011 * 183.09982 * 12 11 10 14 14 C 1.34768 * 119.99853 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00584 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99741 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47032 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99865 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00307 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99844 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99854 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46926 * 90.00171 * 22 20 18 24 24 H 1.48493 * 109.46846 * 210.00133 * 22 20 18 25 25 H 1.48497 * 109.47195 * 330.00579 * 22 20 18 26 26 C 1.48308 * 111.00421 * 284.07377 * 9 8 7 27 27 H 1.08995 * 109.47381 * 59.99662 * 1 2 3 28 28 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46589 * 299.99536 * 1 2 3 30 30 H 1.09006 * 109.46589 * 240.00464 * 2 1 3 31 31 H 1.08995 * 109.47381 * 120.00338 * 2 1 3 32 32 H 1.08005 * 125.52551 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47421 * 334.80433 * 8 7 6 34 34 H 1.08998 * 109.47136 * 214.80314 * 8 7 6 35 35 H 1.08997 * 113.75856 * 23.26099 * 10 9 8 36 36 H 1.08999 * 113.75690 * 251.90215 * 10 9 8 37 37 H 1.09002 * 113.73151 * 90.63763 * 11 10 9 38 38 H 1.08992 * 109.47461 * 303.09814 * 12 11 10 39 39 H 1.09006 * 109.47333 * 63.10331 * 12 11 10 40 40 H 0.97004 * 119.99754 * 359.97438 * 13 12 11 41 41 H 1.09002 * 109.47107 * 299.99944 * 16 14 13 42 42 H 1.08994 * 109.47188 * 59.99704 * 16 14 13 43 43 H 0.97001 * 120.00009 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.85282 * 108.14129 * 26 9 8 45 45 H 1.08998 * 113.75778 * 336.67912 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2034 2.2087 -1.1196 5 6 2.6503 3.3532 -0.6737 6 7 2.7499 3.2912 0.6536 7 6 2.3779 2.1087 1.0718 8 6 2.3509 1.6451 2.5054 9 7 1.0044 1.8424 3.0586 10 6 0.9677 1.5034 4.4984 11 6 0.1084 2.7692 4.6691 12 6 0.4725 3.5988 5.9020 13 7 -0.4457 4.7349 6.0147 14 6 -0.3145 5.6090 7.0320 15 8 0.5640 5.4555 7.8540 16 6 -1.2594 6.7772 7.1483 17 16 -0.8286 7.7589 8.6067 18 6 -2.0552 9.0192 8.5004 19 1 -2.7718 9.0087 7.6924 20 6 -2.1000 10.0263 9.4546 21 7 -3.0168 10.9676 9.3754 22 14 -0.8602 10.0451 10.8516 23 1 0.3345 10.8267 10.4428 24 1 -1.4745 10.6705 12.0502 25 1 -0.4549 8.6530 11.1725 26 6 0.7613 3.2721 3.3690 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.8947 4.2115 -1.2820 33 1 3.0705 2.2211 3.0872 34 1 2.6107 0.5875 2.5503 35 1 1.9394 1.5629 4.9884 36 1 0.4351 0.5781 4.7182 37 1 -0.9627 2.5875 4.5804 38 1 0.3934 2.9778 6.7942 39 1 1.4943 3.9659 5.8042 40 1 -1.1477 4.8582 5.3566 41 1 -1.1810 7.3981 6.2558 42 1 -2.2809 6.4099 7.2467 43 1 -3.0483 11.6712 10.0424 44 1 0.0640 3.7588 2.6871 45 1 1.6729 3.8477 3.5294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714961326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:12 Heat of formation + Delta-G solvation = 60.098147 kcal Electronic energy + Delta-G solvation = -25933.991088 eV Core-core repulsion = 22114.732976 eV Total energy + Delta-G solvation = -3819.258112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.14652 -41.21054 -40.27027 -36.10496 -35.81161 -34.66448 -33.66741 -31.80699 -31.18293 -30.21098 -27.93426 -27.52582 -27.08362 -25.06775 -23.96881 -22.75716 -21.87114 -21.08199 -20.64572 -19.79570 -18.15517 -17.85412 -17.59727 -17.15630 -17.08594 -16.70821 -16.42052 -16.16472 -15.80250 -15.70137 -15.36302 -15.19660 -14.92451 -14.87740 -14.53542 -14.15856 -13.82805 -13.66502 -13.42557 -13.33786 -13.15218 -13.01252 -12.91202 -12.86800 -12.68344 -12.36595 -12.04662 -11.88983 -11.82265 -11.65540 -11.16435 -11.04565 -10.99802 -10.76258 -10.57955 -10.52757 -10.12702 -9.89999 -8.98526 -8.50814 -6.21505 0.55781 1.00455 1.32370 1.37733 1.47745 1.57334 1.59212 1.87699 2.23884 2.28115 2.72690 2.81233 2.87336 3.13166 3.44936 3.53726 3.68397 3.75503 3.90742 4.04321 4.09698 4.23447 4.26121 4.28037 4.31960 4.39104 4.41897 4.48993 4.53964 4.63520 4.75269 4.78958 4.80922 4.86619 4.92351 5.14418 5.23563 5.25790 5.34906 5.43720 5.47074 5.71350 5.83458 5.89579 6.12133 6.48672 6.94279 7.09064 7.21660 8.61525 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.001786 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.591615 B =15675.005858 C =16081.807740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 N -0.365 5.365 4 N -0.349 5.349 5 C 0.189 3.811 6 N -0.571 5.571 7 C 0.283 3.717 8 C 0.097 3.903 9 N -0.477 5.477 10 C 0.025 3.975 11 C -0.115 4.115 12 C 0.130 3.870 13 N -0.711 5.711 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.113 4.113 17 S -0.176 6.176 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.917 5.917 22 Si 0.916 3.084 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.236 1.236 26 C 0.012 3.988 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.237 0.763 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.416 0.584 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.277 0.723 44 H 0.075 0.925 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 -28.848 -19.096 35.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.001 4.001 3 N -0.157 5.157 4 N -0.177 5.177 5 C -0.114 4.114 6 N -0.300 5.300 7 C 0.006 3.994 8 C -0.033 4.033 9 N -0.200 5.200 10 C -0.103 4.103 11 C -0.134 4.134 12 C 0.007 3.993 13 N -0.365 5.365 14 C 0.320 3.680 15 O -0.442 6.442 16 C -0.264 4.264 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.183 1.183 25 H -0.160 1.160 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.143 0.857 32 H 0.253 0.747 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.252 0.748 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.340 -29.327 -18.740 36.307 hybrid contribution -0.652 1.528 -0.437 1.718 sum 9.688 -27.799 -19.177 35.134 Atomic orbital electron populations 1.22082 0.93256 1.04255 1.02231 1.22117 0.96227 0.75764 1.06020 1.50638 1.47612 1.13840 1.03567 1.77965 1.25221 1.04500 1.10034 1.26438 0.97230 0.97134 0.90577 1.70475 1.27048 1.20165 1.12332 1.24428 0.94230 0.87518 0.93239 1.21279 0.93496 1.03690 0.84875 1.68677 1.23209 1.12000 1.16162 1.24015 1.00501 0.98912 0.86883 1.23173 1.02351 0.95821 0.92036 1.21456 0.92869 0.86437 0.98587 1.45743 1.35771 1.26817 1.28134 1.19909 0.83971 0.82962 0.81135 1.90688 1.35840 1.75215 1.42473 1.23286 1.02926 0.97892 1.02259 1.84684 1.45264 1.30101 1.34864 1.22471 1.17385 1.12114 1.15712 0.92011 1.25591 0.97065 0.93748 0.99741 1.70020 1.34785 1.13826 1.36872 0.85849 0.79539 0.81347 0.79524 1.18762 1.18342 1.15960 1.24068 1.00489 0.90920 0.96232 0.94084 0.88095 0.91685 0.88225 0.85708 0.74732 0.90011 0.85519 0.89238 0.86417 0.86389 0.91118 0.92256 0.74752 0.87091 0.86793 0.91389 0.90598 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.24 71.98 0.74 -0.56 16 2 C 0.12 0.94 7.07 86.38 0.61 1.56 16 3 N -0.37 -5.84 3.64 -338.48 -1.23 -7.07 16 4 N -0.35 -7.22 12.70 -61.24 -0.78 -8.00 16 5 C 0.19 3.70 13.03 180.77 2.36 6.06 16 6 N -0.57 -12.17 11.19 -191.78 -2.15 -14.32 16 7 C 0.28 4.69 7.19 138.23 0.99 5.68 16 8 C 0.10 0.95 4.99 85.56 0.43 1.37 16 9 N -0.48 -4.68 6.22 -911.37 -5.67 -10.35 16 10 C 0.03 0.16 7.55 86.41 0.65 0.81 16 11 C -0.11 -1.17 3.93 -10.15 -0.04 -1.21 16 12 C 0.13 2.21 5.51 86.38 0.48 2.68 16 13 N -0.71 -15.29 5.56 -463.06 -2.57 -17.86 16 14 C 0.53 17.69 7.85 87.66 0.69 18.37 16 15 O -0.56 -23.39 15.86 -3.03 -0.05 -23.44 16 16 C -0.11 -4.17 6.16 71.24 0.44 -3.74 16 17 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 18 C -0.53 -30.86 10.04 67.96 0.68 -30.17 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 20 C 0.04 2.58 5.50 84.86 0.47 3.05 16 21 N -0.92 -55.98 13.97 21.65 0.30 -55.68 16 22 Si 0.92 45.05 27.74 68.60 1.90 46.95 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 26 C 0.01 0.16 7.21 86.34 0.62 0.78 16 27 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.12 0.26 7.07 -2.39 -0.02 0.25 16 32 H 0.24 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.08 0.85 7.68 -2.39 -0.02 0.83 16 34 H 0.13 0.48 7.23 -2.39 -0.02 0.46 16 35 H 0.09 0.45 7.83 -2.39 -0.02 0.44 16 36 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.16 7.88 -2.38 -0.02 1.14 16 40 H 0.42 6.54 8.47 -92.70 -0.79 5.76 16 41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 42 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 43 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.15 7.48 -2.39 -0.02 1.13 16 Total: -1.00 -81.79 392.10 -2.00 -83.79 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.18 Total: 11.18 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 9.11 Total: 4.68 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -12.09 Total: -113.27 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.95 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -81.79 -2.00 -83.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714961326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.887 kcal (2) G-P(sol) polarization free energy of solvation -81.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds