Wall clock time and date at job start Tue Mar 31 2020 23:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00556 * 3 2 1 5 5 H 1.48506 * 109.47201 * 30.00489 * 3 2 1 6 6 H 1.48504 * 109.47182 * 150.00172 * 3 2 1 7 7 C 1.38815 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00460 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00297 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46933 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46903 * 304.99424 * 11 10 9 13 13 C 1.52994 * 109.47449 * 64.99583 * 11 10 9 14 14 C 1.52998 * 109.47267 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47336 * 300.00543 * 14 13 11 16 16 C 1.52994 * 109.47386 * 59.99530 * 15 14 13 17 17 C 1.52999 * 109.47449 * 300.00168 * 16 15 14 18 18 H 1.09003 * 109.46903 * 300.00159 * 17 16 15 19 19 N 1.46493 * 109.47638 * 179.97438 * 17 16 15 20 20 C 1.34784 * 119.99864 * 84.99998 * 19 17 16 21 21 O 1.21552 * 119.99772 * 359.72918 * 20 19 17 22 22 C 1.47878 * 120.00191 * 179.72684 * 20 19 17 23 23 N 1.32844 * 119.71886 * 359.72674 * 22 20 19 24 24 C 1.31364 * 121.68835 * 179.74897 * 23 22 20 25 25 C 1.39009 * 120.93228 * 0.53266 * 24 23 22 26 26 F 1.35098 * 120.32946 * 179.76109 * 25 24 23 27 27 C 1.38717 * 119.33750 * 359.73579 * 25 24 23 28 28 C 1.38825 * 118.45223 * 0.02562 * 27 25 24 29 29 F 1.35101 * 120.48751 * 180.02562 * 28 27 25 30 30 H 0.96997 * 120.00121 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99391 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47199 * 59.99661 * 10 9 7 33 33 H 1.09002 * 109.46945 * 299.99503 * 10 9 7 34 34 H 1.09003 * 109.47448 * 300.00110 * 13 11 10 35 35 H 1.09003 * 109.47197 * 60.00021 * 13 11 10 36 36 H 1.09003 * 109.46713 * 60.00070 * 14 13 11 37 37 H 1.08994 * 109.47217 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47419 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.46833 * 299.99453 * 15 14 13 40 40 H 1.09003 * 109.47448 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.47197 * 60.00146 * 16 15 14 42 42 H 0.97000 * 120.00740 * 264.72691 * 19 17 16 43 43 H 1.08005 * 119.53622 * 180.26863 * 24 23 22 44 44 H 1.08004 * 120.77236 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3801 -4.7126 0.8423 13 6 0.2684 -4.8115 -1.3068 14 6 -0.7254 -5.9747 -1.3064 15 6 0.0359 -7.2959 -1.1809 16 6 0.8313 -7.3042 0.1260 17 6 1.8252 -6.1410 0.1256 18 1 2.5089 -6.2476 -0.7166 19 7 2.5863 -6.1484 1.3772 20 6 3.6863 -6.9189 1.4924 21 8 4.0438 -7.6111 0.5595 22 6 4.4581 -6.9219 2.7538 23 7 4.0655 -6.1590 3.7679 24 6 4.7192 -6.1354 4.9072 25 6 5.8614 -6.9058 5.0916 26 9 6.5270 -6.8686 6.2667 27 6 6.3108 -7.7136 4.0573 28 6 5.5970 -7.7218 2.8666 29 9 5.9975 -8.4936 1.8326 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6848 -3.7146 0.8894 33 1 2.6847 -3.7146 -0.8906 34 1 -0.2736 -3.8700 -1.3964 35 1 0.9522 -4.9185 -2.1490 36 1 -1.4091 -5.8681 -0.4642 37 1 -1.2923 -5.9686 -2.2373 38 1 -0.6722 -8.1247 -1.1802 39 1 0.7197 -7.4026 -2.0231 40 1 1.3740 -8.2452 0.2152 41 1 0.1475 -7.1975 0.9681 42 1 2.3011 -5.5960 2.1218 43 1 4.3666 -5.5054 5.7104 44 1 7.1953 -8.3219 4.1755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716516389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:11 Heat of formation + Delta-G solvation = -91.225214 kcal Electronic energy + Delta-G solvation = -29440.679265 eV Core-core repulsion = 25028.726142 eV Total energy + Delta-G solvation = -4411.953123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.65583 -49.38487 -40.85354 -39.66277 -38.06075 -34.60619 -34.24947 -32.94370 -31.88446 -31.49904 -29.64851 -29.13644 -25.53018 -25.03971 -24.26329 -23.03789 -22.33186 -20.73273 -20.59292 -19.91975 -18.72639 -18.60761 -18.11210 -17.08068 -16.77767 -16.40429 -16.05886 -15.87989 -15.57853 -15.06650 -14.94603 -14.69957 -14.43674 -14.23033 -13.87290 -13.76962 -13.71289 -13.48968 -13.19347 -13.01029 -12.95910 -12.67048 -12.40277 -11.82702 -11.52635 -11.11228 -10.88383 -10.86726 -10.72896 -10.70151 -10.42171 -10.39393 -10.23171 -10.12672 -9.97126 -9.85927 -9.62962 -9.46133 -8.93285 -8.82199 -6.89576 -5.75336 -3.03234 -0.13842 0.31496 2.30682 2.81428 3.17722 3.24908 3.44342 3.48022 3.49729 3.51035 3.64202 4.00577 4.17367 4.52650 4.58340 4.81640 4.87447 4.92788 5.03747 5.11305 5.19438 5.26510 5.37242 5.57329 5.60152 5.64345 5.68412 5.75791 5.88504 5.90891 6.11319 6.15630 6.20901 6.26215 6.30134 6.40442 6.50800 6.57921 6.71150 6.80942 6.90961 6.95391 7.50431 7.71880 8.09074 8.43923 9.55257 10.13113 10.48213 11.47615 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008717 B = 0.003446 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.525326 B = 8124.457015 C =10595.228455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.068 0.932 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.077 0.923 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.152 3.848 18 H 0.090 0.910 19 N -0.694 5.694 20 C 0.569 3.431 21 O -0.523 6.523 22 C 0.040 3.960 23 N -0.397 5.397 24 C 0.069 3.931 25 C 0.103 3.897 26 F -0.115 7.115 27 C -0.159 4.159 28 C 0.142 3.858 29 F -0.095 7.095 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.413 0.587 43 H 0.185 0.815 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -19.224 8.739 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.374 5.374 10 C 0.030 3.970 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.165 4.165 17 C 0.048 3.952 18 H 0.108 0.892 19 N -0.344 5.344 20 C 0.353 3.647 21 O -0.399 6.399 22 C -0.100 4.100 23 N -0.107 5.107 24 C -0.094 4.094 25 C 0.081 3.919 26 F -0.094 7.094 27 C -0.186 4.186 28 C 0.119 3.881 29 F -0.073 7.073 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.250 0.750 43 H 0.202 0.798 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.578 -19.106 7.908 21.699 hybrid contribution 1.133 0.644 0.683 1.471 sum 7.711 -18.463 8.590 21.774 Atomic orbital electron populations 1.69652 1.05055 1.25578 1.57984 1.24704 0.95494 0.97570 1.03140 0.86215 0.78655 0.83963 0.77518 1.21763 1.21788 1.20843 1.19218 0.90989 0.84217 1.42401 0.91363 1.42349 1.05803 0.99854 1.89442 1.20676 0.93040 0.85351 0.97936 1.21599 0.97753 0.93192 0.99359 0.90514 1.21493 0.97652 0.98890 0.96422 1.21601 0.98089 0.94511 1.01725 1.21483 0.98752 0.97704 0.97293 1.21899 0.97832 0.98282 0.98474 1.21125 0.92742 0.95257 0.86072 0.89162 1.45922 1.26245 1.44433 1.17769 1.17468 0.80979 0.80978 0.85305 1.90862 1.68818 1.41760 1.38441 1.21614 0.95355 0.97076 0.95948 1.67745 1.28757 1.15405 0.98751 1.23133 0.91436 0.98562 0.96233 1.18776 0.92962 0.97777 0.82404 1.91592 1.79143 1.94830 1.43803 1.21681 1.03090 1.02233 0.91590 1.18308 0.93275 0.91360 0.85142 1.91670 1.89199 1.71217 1.55204 0.93566 0.78203 0.96248 0.96412 0.90145 0.92003 0.91984 0.92059 0.92112 0.91839 0.91755 0.91735 0.75022 0.79772 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.12 5.33 -59.91 -0.32 -18.44 16 10 C 0.16 3.14 5.56 -4.04 -0.02 3.12 16 11 C -0.10 -1.56 1.80 -90.62 -0.16 -1.72 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.61 5.08 -26.73 -0.14 -1.74 16 14 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.11 -1.29 5.92 -26.74 -0.16 -1.45 16 16 C -0.13 -1.53 5.49 -26.73 -0.15 -1.68 16 17 C 0.15 2.13 1.90 -67.93 -0.13 2.00 16 18 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 19 N -0.69 -9.46 4.30 -54.74 -0.24 -9.70 16 20 C 0.57 8.22 7.77 -12.31 -0.10 8.12 16 21 O -0.52 -8.86 14.98 5.32 0.08 -8.78 16 22 C 0.04 0.48 6.75 -82.97 -0.56 -0.08 16 23 N -0.40 -4.33 9.53 -9.70 -0.09 -4.42 16 24 C 0.07 0.56 11.17 -17.47 -0.20 0.37 16 25 C 0.10 0.79 7.35 -39.12 -0.29 0.50 16 26 F -0.12 -0.86 17.28 2.25 0.04 -0.82 16 27 C -0.16 -1.25 10.14 -39.19 -0.40 -1.65 16 28 C 0.14 1.54 7.31 -38.85 -0.28 1.26 16 29 F -0.10 -1.19 15.54 2.25 0.04 -1.16 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 32 H 0.02 0.40 7.29 -51.93 -0.38 0.02 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.41 5.39 7.70 -40.82 -0.31 5.08 16 43 H 0.19 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -31.96 370.70 -8.12 -40.08 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.94 Total: 9.30 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.98 Total: -1.84 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.08 Total: -59.79 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.07 Total: -1.97 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.96 -8.12 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716516389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.141 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds