Wall clock time and date at job start Tue Mar 31 2020 23:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00556 * 3 2 1 5 5 H 1.48506 * 109.47201 * 30.00489 * 3 2 1 6 6 H 1.48504 * 109.47182 * 150.00172 * 3 2 1 7 7 C 1.38815 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00460 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00297 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46933 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46903 * 304.99424 * 11 10 9 13 13 C 1.52994 * 109.47449 * 64.99583 * 11 10 9 14 14 C 1.52998 * 109.47267 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47336 * 300.00543 * 14 13 11 16 16 C 1.52994 * 109.47386 * 59.99530 * 15 14 13 17 17 C 1.52999 * 109.47449 * 300.00168 * 16 15 14 18 18 H 1.09003 * 109.46903 * 300.00159 * 17 16 15 19 19 N 1.46493 * 109.47638 * 179.97438 * 17 16 15 20 20 C 1.34784 * 119.99864 * 84.99998 * 19 17 16 21 21 O 1.21552 * 119.99772 * 359.72918 * 20 19 17 22 22 C 1.47878 * 120.00191 * 179.72684 * 20 19 17 23 23 N 1.32844 * 119.71886 * 359.72674 * 22 20 19 24 24 C 1.31364 * 121.68835 * 179.74897 * 23 22 20 25 25 C 1.39009 * 120.93228 * 0.53266 * 24 23 22 26 26 F 1.35098 * 120.32946 * 179.76109 * 25 24 23 27 27 C 1.38717 * 119.33750 * 359.73579 * 25 24 23 28 28 C 1.38825 * 118.45223 * 0.02562 * 27 25 24 29 29 F 1.35101 * 120.48751 * 180.02562 * 28 27 25 30 30 H 0.96997 * 120.00121 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99391 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47199 * 59.99661 * 10 9 7 33 33 H 1.09002 * 109.46945 * 299.99503 * 10 9 7 34 34 H 1.09003 * 109.47448 * 300.00110 * 13 11 10 35 35 H 1.09003 * 109.47197 * 60.00021 * 13 11 10 36 36 H 1.09003 * 109.46713 * 60.00070 * 14 13 11 37 37 H 1.08994 * 109.47217 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47419 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.46833 * 299.99453 * 15 14 13 40 40 H 1.09003 * 109.47448 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.47197 * 60.00146 * 16 15 14 42 42 H 0.97000 * 120.00740 * 264.72691 * 19 17 16 43 43 H 1.08005 * 119.53622 * 180.26863 * 24 23 22 44 44 H 1.08004 * 120.77236 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3801 -4.7126 0.8423 13 6 0.2684 -4.8115 -1.3068 14 6 -0.7254 -5.9747 -1.3064 15 6 0.0359 -7.2959 -1.1809 16 6 0.8313 -7.3042 0.1260 17 6 1.8252 -6.1410 0.1256 18 1 2.5089 -6.2476 -0.7166 19 7 2.5863 -6.1484 1.3772 20 6 3.6863 -6.9189 1.4924 21 8 4.0438 -7.6111 0.5595 22 6 4.4581 -6.9219 2.7538 23 7 4.0655 -6.1590 3.7679 24 6 4.7192 -6.1354 4.9072 25 6 5.8614 -6.9058 5.0916 26 9 6.5270 -6.8686 6.2667 27 6 6.3108 -7.7136 4.0573 28 6 5.5970 -7.7218 2.8666 29 9 5.9975 -8.4936 1.8326 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6848 -3.7146 0.8894 33 1 2.6847 -3.7146 -0.8906 34 1 -0.2736 -3.8700 -1.3964 35 1 0.9522 -4.9185 -2.1490 36 1 -1.4091 -5.8681 -0.4642 37 1 -1.2923 -5.9686 -2.2373 38 1 -0.6722 -8.1247 -1.1802 39 1 0.7197 -7.4026 -2.0231 40 1 1.3740 -8.2452 0.2152 41 1 0.1475 -7.1975 0.9681 42 1 2.3011 -5.5960 2.1218 43 1 4.3666 -5.5054 5.7104 44 1 7.1953 -8.3219 4.1755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716516389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:10 Heat of formation + Delta-G solvation = -111.335437 kcal Electronic energy + Delta-G solvation = -29441.551310 eV Core-core repulsion = 25028.726142 eV Total energy + Delta-G solvation = -4412.825168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.29189 -50.24942 -41.77939 -40.67976 -39.23698 -36.42501 -35.35412 -33.75715 -33.61960 -32.33107 -31.22229 -30.31106 -27.03735 -26.07908 -25.04632 -24.72773 -23.46356 -21.99937 -21.79056 -21.01490 -19.59629 -19.40749 -19.31197 -18.77573 -17.54810 -17.29377 -17.05190 -16.74043 -16.61912 -16.53684 -16.03558 -15.77681 -15.57436 -15.49224 -15.20215 -15.02386 -14.77837 -14.61827 -14.48093 -14.28021 -14.01017 -13.75717 -13.62845 -13.32298 -12.95514 -12.74632 -12.67428 -12.23102 -12.10098 -11.93575 -11.85562 -11.70537 -11.42259 -11.32666 -11.16661 -11.12072 -10.98722 -10.86258 -10.30377 -9.99795 -8.98111 -7.94453 -5.22561 -0.93042 -0.37416 1.39334 1.47160 1.48498 1.56846 1.84247 2.34873 2.42769 2.55947 2.72212 2.84193 3.35309 3.38816 3.40141 3.55296 3.76535 3.80400 3.93347 4.10441 4.16583 4.25375 4.31281 4.39106 4.45042 4.49555 4.52335 4.56880 4.58156 4.84884 4.88486 5.04465 5.11647 5.13811 5.20381 5.24963 5.29304 5.31391 5.42967 5.46275 5.49261 5.59534 6.13905 6.27893 6.44765 6.99645 7.35017 8.09680 8.35402 9.28778 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008717 B = 0.003446 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.525326 B = 8124.457015 C =10595.228455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.160 3.840 11 C -0.085 4.085 12 H 0.079 0.921 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.159 3.841 18 H 0.073 0.927 19 N -0.691 5.691 20 C 0.566 3.434 21 O -0.556 6.556 22 C 0.017 3.983 23 N -0.414 5.414 24 C 0.076 3.924 25 C 0.118 3.882 26 F -0.108 7.108 27 C -0.143 4.143 28 C 0.129 3.871 29 F -0.110 7.110 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.020 0.980 33 H 0.006 0.994 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.416 0.584 43 H 0.214 0.786 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -19.983 10.308 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.033 3.967 11 C -0.104 4.104 12 H 0.098 0.902 13 C -0.142 4.142 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.157 4.157 17 C 0.055 3.945 18 H 0.091 0.909 19 N -0.341 5.341 20 C 0.351 3.649 21 O -0.434 6.434 22 C -0.121 4.121 23 N -0.124 5.124 24 C -0.088 4.088 25 C 0.096 3.904 26 F -0.086 7.086 27 C -0.169 4.169 28 C 0.106 3.894 29 F -0.088 7.088 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.037 0.963 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.253 0.747 43 H 0.231 0.769 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.268 -19.888 9.479 23.199 hybrid contribution 1.005 0.875 0.292 1.364 sum 8.273 -19.013 9.771 22.922 Atomic orbital electron populations 1.69796 1.06407 1.26070 1.59318 1.25474 0.96359 1.00750 1.03568 0.85205 0.77743 0.79804 0.77390 1.21568 1.21852 1.19720 1.19560 0.91245 0.85550 1.41488 0.91388 1.42486 1.05620 1.00742 1.89266 1.20753 0.93687 0.85178 0.97051 1.21433 0.96840 0.92278 0.99869 0.90249 1.21433 0.97958 0.99038 0.95801 1.21544 0.97389 0.93509 1.02692 1.21470 0.98917 0.97805 0.96551 1.21839 0.97412 0.96892 0.99549 1.20994 0.92693 0.95002 0.85854 0.90913 1.45902 1.26243 1.44391 1.17582 1.17826 0.80847 0.80291 0.85925 1.90829 1.69634 1.43104 1.39859 1.21293 0.96191 0.98934 0.95637 1.67720 1.29633 1.15698 0.99331 1.23629 0.91082 0.98227 0.95819 1.18704 0.92448 0.96930 0.82338 1.91624 1.78916 1.94663 1.43370 1.21899 1.03183 1.01744 0.90101 1.18454 0.93571 0.91564 0.85836 1.91630 1.89352 1.71691 1.56135 0.93926 0.79017 0.96259 0.97647 0.92934 0.92550 0.91390 0.90823 0.89763 0.92066 0.92060 0.90653 0.74673 0.76923 0.78572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.53 13.06 21.65 0.28 -58.24 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -37.45 5.33 -343.45 -1.83 -39.28 16 10 C 0.16 6.54 5.56 86.38 0.48 7.02 16 11 C -0.08 -2.68 1.80 -10.79 -0.02 -2.70 16 12 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 13 C -0.10 -3.18 5.08 30.59 0.16 -3.03 16 14 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 15 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 16 C -0.12 -2.75 5.49 30.59 0.17 -2.58 16 17 C 0.16 4.47 1.90 44.99 0.09 4.56 16 18 H 0.07 2.33 7.58 -2.39 -0.02 2.31 16 19 N -0.69 -19.09 4.30 -445.36 -1.91 -21.01 16 20 C 0.57 16.69 7.77 86.79 0.67 17.37 16 21 O -0.56 -19.45 14.98 -3.88 -0.06 -19.50 16 22 C 0.02 0.42 6.75 41.88 0.28 0.70 16 23 N -0.41 -8.60 9.53 -184.60 -1.76 -10.36 16 24 C 0.08 1.06 11.17 84.95 0.95 2.01 16 25 C 0.12 1.47 7.35 22.57 0.17 1.64 16 26 F -0.11 -1.23 17.28 44.97 0.78 -0.46 16 27 C -0.14 -1.92 10.14 22.52 0.23 -1.69 16 28 C 0.13 2.72 7.31 22.75 0.17 2.88 16 29 F -0.11 -2.78 15.54 44.97 0.70 -2.08 16 30 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 31 H 0.38 20.01 6.85 -92.71 -0.64 19.38 16 32 H 0.02 0.80 7.29 -2.39 -0.02 0.78 16 33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.05 1.90 7.18 -2.39 -0.02 1.88 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.42 10.91 7.70 -92.71 -0.71 10.20 16 43 H 0.21 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.75 370.70 2.93 -66.82 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.30 Total: 30.79 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 5.01 Total: 5.04 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -5.22 Total: -128.90 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.50 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 1.48 Total: -2.54 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.75 2.93 -66.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716516389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.517 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds