Wall clock time and date at job start Tue Mar 31 2020 23:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.53001 * 109.47238 * 64.99625 * 11 10 9 14 14 C 1.53003 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46963 * 299.99597 * 14 13 11 16 16 C 1.53001 * 109.46923 * 60.00343 * 15 14 13 17 17 C 1.52996 * 109.47238 * 300.00062 * 16 15 14 18 18 H 1.09002 * 109.47682 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.47119 * 299.99906 * 17 16 15 20 20 C 1.34784 * 120.00276 * 275.00139 * 19 17 16 21 21 O 1.21553 * 119.99368 * 359.97438 * 20 19 17 22 22 C 1.47872 * 120.00066 * 179.97438 * 20 19 17 23 23 N 1.32840 * 119.72388 * 359.97438 * 22 20 19 24 24 C 1.31369 * 121.69136 * 179.97438 * 23 22 20 25 25 C 1.39005 * 120.93296 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.33201 * 179.97438 * 25 24 23 27 27 C 1.38719 * 119.33836 * 0.02562 * 25 24 23 28 28 C 1.38841 * 118.45175 * 359.72950 * 27 25 24 29 29 F 1.35100 * 120.48499 * 180.28397 * 28 27 25 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 1.09001 * 109.47309 * 300.00020 * 13 11 10 35 35 H 1.08995 * 109.46988 * 60.00458 * 13 11 10 36 36 H 1.08994 * 109.47663 * 59.99860 * 14 13 11 37 37 H 1.08997 * 109.47193 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47204 * 179.97438 * 15 14 13 39 39 H 1.08994 * 109.47145 * 300.00580 * 15 14 13 40 40 H 1.09003 * 109.47318 * 59.99630 * 16 15 14 41 41 H 1.09001 * 109.47309 * 180.02562 * 16 15 14 42 42 H 0.97002 * 119.99859 * 95.00085 * 19 17 16 43 43 H 1.07993 * 119.53549 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.77299 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3792 -4.7086 0.8538 13 6 0.2694 -4.8177 -1.2949 14 6 -0.7254 -5.9802 -1.2892 15 6 0.0350 -7.3014 -1.1563 16 6 0.8293 -7.3033 0.1513 17 6 1.8239 -6.1408 0.1457 18 1 2.3902 -6.1424 1.0770 19 7 2.7438 -6.2906 -0.9847 20 6 3.8429 -7.0610 -0.8616 21 8 4.0711 -7.6310 0.1875 22 6 4.7710 -7.2127 -2.0027 23 7 4.5160 -6.5876 -3.1468 24 6 5.3142 -6.6948 -4.1846 25 6 6.4650 -7.4721 -4.1237 26 9 7.2770 -7.5742 -5.1986 27 6 6.7707 -8.1428 -2.9486 28 6 5.9115 -8.0068 -1.8665 29 9 6.1726 -8.6371 -0.7004 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 -0.2726 -3.8767 -1.3895 35 1 0.9538 -4.9289 -2.1359 36 1 -1.4097 -5.8688 -0.4482 37 1 -1.2909 -5.9791 -2.2209 38 1 -0.6737 -8.1296 -1.1517 39 1 0.7193 -7.4128 -1.9973 40 1 0.1449 -7.1917 0.9924 41 1 1.3713 -8.2443 0.2458 42 1 2.5618 -5.8354 -1.8217 43 1 5.0729 -6.1717 -5.0980 44 1 7.6590 -8.7528 -2.8755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716516390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:14 Heat of formation + Delta-G solvation = -88.464246 kcal Electronic energy + Delta-G solvation = -29741.210299 eV Core-core repulsion = 25329.376901 eV Total energy + Delta-G solvation = -4411.833399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.66876 -49.39046 -40.91314 -39.81333 -38.03115 -34.64481 -33.82376 -32.88100 -31.91297 -31.50080 -29.79793 -29.33010 -25.54864 -25.04357 -24.26935 -22.99563 -22.32257 -21.49940 -20.56453 -19.04600 -18.82542 -18.59779 -18.22899 -17.07606 -16.79270 -16.39606 -15.95323 -15.87953 -15.42704 -15.31174 -14.89287 -14.81779 -14.59681 -14.09983 -14.08107 -13.80052 -13.64008 -13.35434 -13.22009 -13.04410 -12.98474 -12.68979 -12.09659 -11.96659 -11.66168 -11.40344 -10.88982 -10.87718 -10.72241 -10.71640 -10.43265 -10.33454 -10.17338 -10.03865 -9.95606 -9.84603 -9.61785 -9.47273 -8.93447 -8.83111 -6.89743 -5.75651 -3.03571 -0.14784 0.30108 2.30389 2.82453 3.17251 3.24672 3.43844 3.47166 3.49922 3.51849 3.63327 3.99501 4.17542 4.52200 4.58502 4.82503 4.88773 4.90706 4.94590 5.07365 5.17544 5.26688 5.35276 5.58333 5.62305 5.64370 5.69208 5.77175 5.84401 5.87542 6.05766 6.15048 6.17424 6.26050 6.28899 6.38936 6.51065 6.55018 6.70590 6.82595 6.88833 6.93312 7.51083 7.72274 8.10082 8.43656 9.55051 10.12885 10.47867 11.47355 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.003285 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.447411 B = 8520.707228 C =10065.348464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.159 3.841 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.112 4.112 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.153 3.847 18 H 0.091 0.909 19 N -0.689 5.689 20 C 0.568 3.432 21 O -0.524 6.524 22 C 0.040 3.960 23 N -0.398 5.398 24 C 0.068 3.932 25 C 0.103 3.897 26 F -0.115 7.115 27 C -0.159 4.159 28 C 0.143 3.857 29 F -0.095 7.095 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.412 0.588 43 H 0.185 0.815 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.104 -20.320 -8.921 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.121 4.121 12 H 0.106 0.894 13 C -0.149 4.149 14 C -0.158 4.158 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.048 3.952 18 H 0.109 0.891 19 N -0.341 5.341 20 C 0.351 3.649 21 O -0.399 6.399 22 C -0.099 4.099 23 N -0.108 5.108 24 C -0.094 4.094 25 C 0.081 3.919 26 F -0.094 7.094 27 C -0.186 4.186 28 C 0.119 3.881 29 F -0.073 7.073 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.250 0.750 43 H 0.202 0.798 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.650 -20.107 -8.155 23.007 hybrid contribution 1.188 0.570 -0.451 1.393 sum 8.838 -19.537 -8.606 23.106 Atomic orbital electron populations 1.69666 1.05055 1.25464 1.58064 1.24712 0.95505 0.97596 1.03156 0.86141 0.78804 0.84238 0.77172 1.20628 1.21895 1.21896 1.19268 0.91028 0.84206 1.42267 0.91288 1.42364 1.05820 0.99882 1.89420 1.20654 0.93004 0.85335 0.97888 1.21634 0.97836 0.93192 0.99388 0.89448 1.21544 0.97713 0.99015 0.96648 1.21583 0.98043 0.94468 1.01686 1.21506 0.98670 0.97595 0.97660 1.21910 0.97901 0.98389 0.98473 1.21086 0.89705 0.94902 0.89495 0.89117 1.45947 1.22642 1.47875 1.17596 1.17473 0.81209 0.80380 0.85807 1.90862 1.74376 1.47253 1.27446 1.21626 0.95480 0.98232 0.94606 1.67738 1.28675 1.16318 0.98048 1.23119 0.89831 0.97720 0.98742 1.18770 0.90845 0.98181 0.84143 1.91592 1.71091 1.94256 1.52437 1.21690 1.02450 1.03098 0.91344 1.18315 0.93728 0.93188 0.82835 1.91672 1.93011 1.78572 1.44004 0.93617 0.78197 0.96274 0.96472 0.90192 0.92487 0.91880 0.92229 0.92440 0.92248 0.90764 0.91703 0.74990 0.79810 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.14 5.33 -59.91 -0.32 -18.46 16 10 C 0.16 3.15 5.42 -4.04 -0.02 3.13 16 11 C -0.10 -1.56 2.02 -90.62 -0.18 -1.75 16 12 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 13 C -0.11 -1.61 4.90 -26.73 -0.13 -1.74 16 14 C -0.12 -1.43 5.92 -26.73 -0.16 -1.58 16 15 C -0.12 -1.28 5.77 -26.73 -0.15 -1.43 16 16 C -0.13 -1.53 5.60 -26.73 -0.15 -1.67 16 17 C 0.15 2.10 2.23 -67.93 -0.15 1.95 16 18 H 0.09 1.38 7.57 -51.93 -0.39 0.98 16 19 N -0.69 -9.21 3.61 -54.74 -0.20 -9.41 16 20 C 0.57 8.09 7.77 -12.31 -0.10 7.99 16 21 O -0.52 -8.80 14.97 5.32 0.08 -8.72 16 22 C 0.04 0.48 6.75 -82.97 -0.56 -0.08 16 23 N -0.40 -4.22 9.53 -9.71 -0.09 -4.31 16 24 C 0.07 0.54 11.17 -17.47 -0.20 0.34 16 25 C 0.10 0.76 7.35 -39.12 -0.29 0.48 16 26 F -0.12 -0.83 17.28 2.25 0.04 -0.79 16 27 C -0.16 -1.22 10.14 -39.18 -0.40 -1.62 16 28 C 0.14 1.53 7.31 -38.84 -0.28 1.24 16 29 F -0.09 -1.18 15.54 2.25 0.04 -1.15 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 32 H 0.02 0.39 7.61 -51.93 -0.40 -0.01 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 1.37 7.18 -51.93 -0.37 0.99 16 35 H 0.06 0.79 6.51 -51.93 -0.34 0.46 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.66 7.60 -51.93 -0.39 0.26 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.41 5.31 5.99 -40.82 -0.24 5.07 16 43 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -31.99 366.61 -8.01 -40.00 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.77 Total: 9.13 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.02 Total: -2.00 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.12 Total: -59.44 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.07 Total: -1.94 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.99 -8.01 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716516390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.464 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds