Wall clock time and date at job start Tue Mar 31 2020 23:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.53001 * 109.47238 * 64.99625 * 11 10 9 14 14 C 1.53003 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46963 * 299.99597 * 14 13 11 16 16 C 1.53001 * 109.46923 * 60.00343 * 15 14 13 17 17 C 1.52996 * 109.47238 * 300.00062 * 16 15 14 18 18 H 1.09002 * 109.47682 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.47119 * 299.99906 * 17 16 15 20 20 C 1.34784 * 120.00276 * 275.00139 * 19 17 16 21 21 O 1.21553 * 119.99368 * 359.97438 * 20 19 17 22 22 C 1.47872 * 120.00066 * 179.97438 * 20 19 17 23 23 N 1.32840 * 119.72388 * 359.97438 * 22 20 19 24 24 C 1.31369 * 121.69136 * 179.97438 * 23 22 20 25 25 C 1.39005 * 120.93296 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.33201 * 179.97438 * 25 24 23 27 27 C 1.38719 * 119.33836 * 0.02562 * 25 24 23 28 28 C 1.38841 * 118.45175 * 359.72950 * 27 25 24 29 29 F 1.35100 * 120.48499 * 180.28397 * 28 27 25 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 1.09001 * 109.47309 * 300.00020 * 13 11 10 35 35 H 1.08995 * 109.46988 * 60.00458 * 13 11 10 36 36 H 1.08994 * 109.47663 * 59.99860 * 14 13 11 37 37 H 1.08997 * 109.47193 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47204 * 179.97438 * 15 14 13 39 39 H 1.08994 * 109.47145 * 300.00580 * 15 14 13 40 40 H 1.09003 * 109.47318 * 59.99630 * 16 15 14 41 41 H 1.09001 * 109.47309 * 180.02562 * 16 15 14 42 42 H 0.97002 * 119.99859 * 95.00085 * 19 17 16 43 43 H 1.07993 * 119.53549 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.77299 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3792 -4.7086 0.8538 13 6 0.2694 -4.8177 -1.2949 14 6 -0.7254 -5.9802 -1.2892 15 6 0.0350 -7.3014 -1.1563 16 6 0.8293 -7.3033 0.1513 17 6 1.8239 -6.1408 0.1457 18 1 2.3902 -6.1424 1.0770 19 7 2.7438 -6.2906 -0.9847 20 6 3.8429 -7.0610 -0.8616 21 8 4.0711 -7.6310 0.1875 22 6 4.7710 -7.2127 -2.0027 23 7 4.5160 -6.5876 -3.1468 24 6 5.3142 -6.6948 -4.1846 25 6 6.4650 -7.4721 -4.1237 26 9 7.2770 -7.5742 -5.1986 27 6 6.7707 -8.1428 -2.9486 28 6 5.9115 -8.0068 -1.8665 29 9 6.1726 -8.6371 -0.7004 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 -0.2726 -3.8767 -1.3895 35 1 0.9538 -4.9289 -2.1359 36 1 -1.4097 -5.8688 -0.4482 37 1 -1.2909 -5.9791 -2.2209 38 1 -0.6737 -8.1296 -1.1517 39 1 0.7193 -7.4128 -1.9973 40 1 0.1449 -7.1917 0.9924 41 1 1.3713 -8.2443 0.2458 42 1 2.5618 -5.8354 -1.8217 43 1 5.0729 -6.1717 -5.0980 44 1 7.6590 -8.7528 -2.8755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716516390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:13 Heat of formation + Delta-G solvation = -108.265210 kcal Electronic energy + Delta-G solvation = -29742.068934 eV Core-core repulsion = 25329.376901 eV Total energy + Delta-G solvation = -4412.692033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.28577 -50.24227 -41.85002 -40.78020 -39.18577 -36.46341 -34.86994 -33.74975 -33.59505 -32.32409 -31.23998 -30.60505 -27.03693 -26.07815 -25.03112 -24.68858 -23.45144 -22.51682 -21.93175 -20.11402 -19.75746 -19.38419 -19.27213 -18.83456 -17.55193 -17.12752 -16.98117 -16.79335 -16.61088 -16.37443 -16.23075 -15.96437 -15.62212 -15.36269 -15.13026 -15.10509 -14.87402 -14.65822 -14.48117 -14.18478 -14.02996 -13.70350 -13.43079 -13.12665 -12.98478 -12.87621 -12.73495 -12.58447 -12.08827 -11.91893 -11.85052 -11.60476 -11.40035 -11.20278 -11.11451 -11.06863 -10.98251 -10.85803 -10.29646 -9.98471 -8.98400 -7.95011 -5.23123 -0.92100 -0.36946 1.41259 1.46924 1.47591 1.57500 1.87422 2.36092 2.43930 2.55590 2.73075 2.85510 3.36533 3.38429 3.41616 3.58948 3.78746 3.81031 3.84690 4.09293 4.17679 4.23575 4.32809 4.42067 4.48646 4.49902 4.58017 4.58442 4.65979 4.74728 4.91658 5.01687 5.08467 5.16588 5.21026 5.27419 5.31714 5.33313 5.44091 5.47993 5.52618 5.59170 6.14765 6.27644 6.46664 7.02286 7.34627 8.09492 8.34898 9.28438 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.003285 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.447411 B = 8520.707228 C =10065.348464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.088 4.088 12 H 0.083 0.917 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.122 4.122 17 C 0.158 3.842 18 H 0.073 0.927 19 N -0.685 5.685 20 C 0.565 3.435 21 O -0.557 6.557 22 C 0.018 3.982 23 N -0.414 5.414 24 C 0.076 3.924 25 C 0.118 3.882 26 F -0.108 7.108 27 C -0.143 4.143 28 C 0.128 3.872 29 F -0.110 7.110 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.020 0.980 33 H 0.004 0.996 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.415 0.585 43 H 0.215 0.785 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.018 -21.221 -10.731 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.160 4.160 17 C 0.053 3.947 18 H 0.091 0.909 19 N -0.336 5.336 20 C 0.350 3.650 21 O -0.436 6.436 22 C -0.120 4.120 23 N -0.124 5.124 24 C -0.087 4.087 25 C 0.095 3.905 26 F -0.086 7.086 27 C -0.170 4.170 28 C 0.105 3.895 29 F -0.089 7.089 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.038 0.962 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.253 0.747 43 H 0.232 0.768 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.581 -21.032 -9.971 24.807 hybrid contribution 0.998 0.830 0.021 1.298 sum 9.579 -20.201 -9.950 24.471 Atomic orbital electron populations 1.69808 1.06418 1.25991 1.59417 1.25487 0.96376 1.00794 1.03615 0.85128 0.78098 0.80056 0.76801 1.19483 1.21708 1.22027 1.19605 0.91273 0.85541 1.41309 0.91321 1.42512 1.05651 1.00802 1.89239 1.20734 0.93656 0.85143 0.97003 1.21466 0.96913 0.92255 1.00076 0.89871 1.21457 0.97993 0.98935 0.95930 1.21529 0.97394 0.93572 1.02553 1.21459 0.98761 0.97619 0.96835 1.21860 0.97510 0.96978 0.99677 1.20952 0.89909 0.94714 0.89076 0.90872 1.45900 1.22567 1.47759 1.17398 1.17835 0.81323 0.79697 0.86175 1.90831 1.75167 1.48621 1.28967 1.21295 0.95923 1.00132 0.94632 1.67718 1.29704 1.16732 0.98204 1.23631 0.89254 0.97042 0.98771 1.18705 0.90455 0.97283 0.84013 1.91624 1.70833 1.94076 1.52062 1.21903 1.02402 1.02489 0.90179 1.18469 0.94220 0.93606 0.83203 1.91629 1.93144 1.78981 1.45105 0.93941 0.79018 0.96175 0.97796 0.93078 0.92020 0.91667 0.90867 0.90417 0.92195 0.89816 0.92038 0.74651 0.76843 0.78660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.70 13.06 21.65 0.28 -58.41 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -37.54 5.33 -343.46 -1.83 -39.37 16 10 C 0.16 6.56 5.42 86.38 0.47 7.03 16 11 C -0.09 -2.75 2.02 -10.79 -0.02 -2.78 16 12 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 13 C -0.11 -3.02 4.90 30.60 0.15 -2.87 16 14 C -0.11 -2.50 5.92 30.60 0.18 -2.32 16 15 C -0.11 -2.17 5.77 30.60 0.18 -2.00 16 16 C -0.12 -2.79 5.60 30.59 0.17 -2.62 16 17 C 0.16 4.39 2.23 44.99 0.10 4.49 16 18 H 0.07 2.31 7.57 -2.39 -0.02 2.29 16 19 N -0.68 -18.44 3.61 -445.37 -1.61 -20.05 16 20 C 0.56 16.39 7.77 86.79 0.67 17.07 16 21 O -0.56 -19.38 14.97 -3.88 -0.06 -19.44 16 22 C 0.02 0.43 6.75 41.88 0.28 0.71 16 23 N -0.41 -8.24 9.53 -184.62 -1.76 -10.00 16 24 C 0.08 1.00 11.17 84.95 0.95 1.95 16 25 C 0.12 1.41 7.35 22.57 0.17 1.57 16 26 F -0.11 -1.18 17.28 44.97 0.78 -0.41 16 27 C -0.14 -1.88 10.14 22.53 0.23 -1.65 16 28 C 0.13 2.66 7.31 22.75 0.17 2.83 16 29 F -0.11 -2.78 15.54 44.97 0.70 -2.08 16 30 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.38 20.04 6.85 -92.71 -0.64 19.41 16 32 H 0.02 0.83 7.61 -2.38 -0.02 0.81 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.05 1.77 7.18 -2.39 -0.02 1.76 16 35 H 0.06 1.69 6.51 -2.39 -0.02 1.67 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.21 7.60 -2.39 -0.02 1.19 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.41 10.62 5.99 -92.71 -0.56 10.07 16 43 H 0.22 1.41 8.06 -2.91 -0.02 1.38 16 44 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -69.91 366.61 3.40 -66.52 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.13 Total: 30.03 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.00 Total: 4.82 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -4.91 Total: -127.84 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.06 Total: -19.44 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 1.48 Total: -2.49 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -69.91 3.40 -66.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716516390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.750 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds