Wall clock time and date at job start Tue Mar 31 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35494 * 126.97661 * 2 1 4 4 N 1.30523 * 107.30765 * 179.97438 * 3 2 1 5 5 N 1.28596 * 109.67031 * 0.02562 * 4 3 2 6 6 C 1.30523 * 109.67574 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.34612 * 180.26500 * 6 5 4 8 8 N 1.46898 * 109.47025 * 269.68289 * 7 6 5 9 9 C 1.46906 * 111.00394 * 175.29800 * 8 7 6 10 10 C 1.53000 * 112.84415 * 290.68791 * 9 8 7 11 11 N 1.46499 * 109.47471 * 312.16496 * 10 9 8 12 12 C 1.34781 * 120.00294 * 174.70445 * 11 10 9 13 13 O 1.21279 * 119.99315 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.99955 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47046 * 180.02562 * 14 12 11 16 16 C 1.76204 * 100.00091 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99943 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99904 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99743 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00036 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47295 * 89.99567 * 20 18 16 22 22 H 1.48496 * 109.47293 * 209.99908 * 20 18 16 23 23 H 1.48507 * 109.47206 * 329.99876 * 20 18 16 24 24 C 1.53781 * 113.61788 * 159.38224 * 9 8 7 25 25 C 1.53777 * 87.07996 * 220.02030 * 24 9 8 26 26 C 1.53778 * 87.08434 * 25.42958 * 25 24 9 27 27 H 1.08988 * 109.47426 * 269.99626 * 1 2 3 28 28 H 1.08997 * 109.47467 * 30.00253 * 1 2 3 29 29 H 1.09005 * 109.46826 * 150.00075 * 1 2 3 30 30 H 1.07998 * 126.34921 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47371 * 29.68356 * 7 6 5 32 32 H 1.09002 * 109.47240 * 149.68420 * 7 6 5 33 33 H 1.00904 * 111.00464 * 299.25005 * 8 7 6 34 34 H 1.09001 * 109.47516 * 72.17033 * 10 9 8 35 35 H 1.09000 * 109.46832 * 192.17196 * 10 9 8 36 36 H 0.97001 * 120.00157 * 354.71505 * 11 10 9 37 37 H 1.08999 * 109.47167 * 300.00391 * 14 12 11 38 38 H 1.09002 * 109.47063 * 60.00097 * 14 12 11 39 39 H 0.97005 * 120.00009 * 179.97438 * 19 18 16 40 40 H 1.09002 * 113.60958 * 334.56902 * 24 9 8 41 41 H 1.08998 * 113.61400 * 105.46474 * 24 9 8 42 42 H 1.09002 * 113.61359 * 270.88516 * 25 24 9 43 43 H 1.08993 * 113.69253 * 139.99043 * 25 24 9 44 44 H 1.08998 * 113.61735 * 220.01922 * 26 25 24 45 45 H 1.09008 * 113.61408 * 89.11661 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6431 0.0006 5 7 3.5091 -0.6428 0.0004 6 6 2.2801 -1.0823 -0.0009 7 6 1.8478 -2.5259 0.0041 8 7 1.7035 -2.9986 -1.3792 9 6 1.3911 -4.4336 -1.4155 10 6 2.5650 -5.3085 -0.9713 11 7 3.7841 -4.8760 -1.6590 12 6 4.9697 -5.4345 -1.3443 13 8 5.0271 -6.2955 -0.4921 14 6 6.2238 -4.9891 -2.0513 15 16 7.6391 -5.9190 -1.4125 16 6 8.9302 -5.2176 -2.3851 17 1 8.7041 -4.4488 -3.1090 18 6 10.2378 -5.6532 -2.2208 19 7 11.2023 -5.1289 -2.9470 20 14 10.6288 -6.9836 -0.9691 21 1 10.5286 -8.3166 -1.6158 22 1 12.0066 -6.7868 -0.4515 23 1 9.6617 -6.9050 0.1552 24 6 0.7443 -4.8902 -2.7338 25 6 -0.1742 -5.7828 -1.8827 26 6 0.0618 -4.7921 -0.7304 27 1 -0.3633 -0.0001 1.0275 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.9701 2.1170 0.0004 31 1 2.5976 -3.1280 0.5174 32 1 0.8924 -2.6174 0.5208 33 1 1.0047 -2.4639 -1.8731 34 1 2.7022 -5.2131 0.1059 35 1 2.3573 -6.3491 -1.2204 36 1 3.7381 -4.1875 -2.3407 37 1 6.1222 -5.1719 -3.1210 38 1 6.3800 -3.9243 -1.8779 39 1 12.1162 -5.4331 -2.8319 40 1 0.2156 -4.0949 -3.2592 41 1 1.4199 -5.4498 -3.3807 42 1 0.2339 -6.7760 -1.6950 43 1 -1.2063 -5.8084 -2.2320 44 1 0.1864 -5.2726 0.2400 45 1 -0.6536 -3.9699 -0.7081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717147512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:58 Heat of formation + Delta-G solvation = 73.684602 kcal Electronic energy + Delta-G solvation = -26981.274328 eV Core-core repulsion = 23162.605369 eV Total energy + Delta-G solvation = -3818.668959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.36044 -40.57645 -38.69552 -35.65679 -34.76539 -33.96431 -32.32053 -30.91076 -29.77735 -28.17653 -27.07098 -26.57282 -25.69779 -25.42449 -22.88397 -22.64938 -21.10095 -20.23522 -19.29139 -17.70728 -17.58522 -17.01622 -16.63632 -16.28572 -16.13207 -15.55322 -15.19043 -15.02285 -14.91022 -14.79585 -14.63893 -13.90241 -13.76924 -13.56870 -13.41293 -13.29923 -13.00997 -12.78446 -12.70706 -12.57018 -12.04756 -11.73325 -11.68169 -11.50249 -11.16049 -11.08128 -10.91046 -10.76825 -10.53596 -10.51909 -10.46491 -9.75113 -9.53285 -9.37574 -8.93214 -8.89569 -8.76496 -8.36302 -6.77607 -6.17335 -3.87460 1.45016 2.07762 2.66525 2.90355 3.16055 3.35609 3.41680 3.59403 3.60779 3.80216 3.93732 3.99069 4.05760 4.18579 4.25714 4.26416 4.35990 4.41034 4.44006 4.54101 4.68128 4.89876 4.97272 5.01478 5.11830 5.21714 5.22893 5.29635 5.38736 5.42477 5.49210 5.50289 5.58785 5.65596 5.73155 5.83390 5.86102 5.96844 6.23301 6.34355 6.51645 6.70896 6.80402 7.86111 8.06170 8.54898 8.54984 8.68402 9.29132 10.92168 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.002915 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.105130 B = 9601.690236 C =11474.987115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.480 5.480 3 C 0.147 3.853 4 N -0.293 5.293 5 N -0.265 5.265 6 C 0.177 3.823 7 C 0.150 3.850 8 N -0.664 5.664 9 C 0.086 3.914 10 C 0.153 3.847 11 N -0.721 5.721 12 C 0.532 3.468 13 O -0.528 6.528 14 C -0.121 4.121 15 S -0.144 6.144 16 C -0.517 4.517 17 H 0.088 0.912 18 C 0.094 3.906 19 N -0.882 5.882 20 Si 0.857 3.143 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.235 1.235 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.167 4.167 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.218 0.782 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.342 0.658 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.408 0.592 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.270 0.730 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.784 8.865 3.657 35.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.173 5.173 3 C -0.140 4.140 4 N -0.132 5.132 5 N -0.105 5.105 6 C -0.091 4.091 7 C 0.019 3.981 8 N -0.295 5.295 9 C -0.006 4.006 10 C 0.028 3.972 11 N -0.376 5.376 12 C 0.318 3.682 13 O -0.403 6.403 14 C -0.272 4.272 15 S 0.082 5.918 16 C -0.665 4.665 17 H 0.106 0.894 18 C -0.114 4.114 19 N -0.519 5.519 20 Si 0.682 3.318 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.159 1.159 24 C -0.168 4.168 25 C -0.176 4.176 26 C -0.207 4.207 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.234 0.766 31 H 0.130 0.870 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.243 0.757 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -31.302 7.370 4.948 32.537 hybrid contribution -2.167 1.173 -0.656 2.550 sum -33.470 8.543 4.292 34.808 Atomic orbital electron populations 1.22069 0.75762 1.05030 1.04132 1.46254 1.08929 1.06984 1.55104 1.26484 0.87375 0.94814 1.05375 1.74387 1.17852 1.03456 1.17482 1.74417 1.16772 1.02792 1.16510 1.24718 0.87411 0.91693 1.05258 1.20124 1.00967 0.86010 0.90995 1.60065 1.53113 1.02766 1.13582 1.22627 0.92930 0.87260 0.97745 1.20922 0.82451 0.96501 0.97305 1.45696 1.05840 1.43089 1.42936 1.20243 0.84154 0.81191 0.82582 1.90681 1.86195 1.31188 1.32271 1.23248 0.95698 1.05087 1.03174 1.84697 0.99110 1.53388 1.54599 1.22342 0.92823 1.26574 1.24758 0.89387 1.24713 0.95036 0.96133 0.95506 1.69946 1.00648 1.42027 1.39325 0.86731 0.79344 0.82343 0.83408 1.19323 1.20059 1.15872 1.23126 0.98377 0.99556 0.95710 1.22756 1.00154 0.98352 0.96342 1.23618 0.97444 1.00173 0.99460 0.89932 0.88775 0.89622 0.76608 0.87031 0.93107 0.83888 0.91400 0.91000 0.75707 0.88740 0.88224 0.92061 0.89736 0.90122 0.89438 0.91054 0.90629 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.13 10.89 59.85 0.65 0.78 16 2 N -0.48 -3.37 3.15 -122.69 -0.39 -3.76 16 3 C 0.15 1.27 12.74 -89.94 -1.15 0.13 16 4 N -0.29 -4.15 12.21 29.69 0.36 -3.79 16 5 N -0.26 -4.01 12.21 32.79 0.40 -3.61 16 6 C 0.18 1.83 7.58 -154.99 -1.18 0.65 16 7 C 0.15 1.18 5.47 -4.98 -0.03 1.16 16 8 N -0.66 -4.69 5.76 -100.40 -0.58 -5.27 16 9 C 0.09 0.58 0.80 -130.79 -0.10 0.48 16 10 C 0.15 1.64 4.62 -4.04 -0.02 1.62 16 11 N -0.72 -9.78 5.38 -60.30 -0.32 -10.11 16 12 C 0.53 10.01 7.85 -10.99 -0.09 9.93 16 13 O -0.53 -11.75 15.86 5.56 0.09 -11.66 16 14 C -0.12 -2.55 6.16 36.00 0.22 -2.33 16 15 S -0.14 -3.85 18.55 -107.50 -1.99 -5.84 16 16 C -0.52 -15.61 10.04 30.94 0.31 -15.30 16 17 H 0.09 2.78 8.03 -52.49 -0.42 2.36 16 18 C 0.09 2.87 5.50 -17.43 -0.10 2.78 16 19 N -0.88 -27.64 13.97 55.49 0.78 -26.87 16 20 Si 0.86 22.63 27.74 -169.99 -4.72 17.92 16 21 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.23 -6.20 6.74 56.52 0.38 -5.82 16 24 C -0.13 -0.76 7.33 -25.92 -0.19 -0.95 16 25 C -0.14 -0.71 7.73 -25.92 -0.20 -0.91 16 26 C -0.17 -0.81 6.44 -25.92 -0.17 -0.97 16 27 H 0.08 0.06 8.14 -51.94 -0.42 -0.36 16 28 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.09 0.05 7.82 -51.93 -0.41 -0.36 16 30 H 0.22 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.11 1.16 6.97 -51.93 -0.36 0.80 16 32 H 0.05 0.26 7.26 -51.93 -0.38 -0.12 16 33 H 0.34 1.81 8.51 -39.29 -0.33 1.48 16 34 H 0.07 0.80 7.40 -51.93 -0.38 0.42 16 35 H 0.07 0.79 7.36 -51.93 -0.38 0.40 16 36 H 0.41 5.02 8.10 -40.82 -0.33 4.69 16 37 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 38 H 0.10 2.06 8.14 -51.92 -0.42 1.64 16 39 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 40 H 0.08 0.39 7.95 -51.93 -0.41 -0.02 16 41 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 45 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -39.91 387.42 -9.32 -49.24 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.76 Total: 0.85 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.03 Total: -2.94 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.25 Total: -53.39 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.72 Total: 17.92 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.99 Total: -5.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.91 -9.32 -49.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717147512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.921 kcal (2) G-P(sol) polarization free energy of solvation -39.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds