Wall clock time and date at job start Tue Mar 31 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35494 * 126.97661 * 2 1 4 4 N 1.30523 * 107.30765 * 179.97438 * 3 2 1 5 5 N 1.28596 * 109.67031 * 0.02562 * 4 3 2 6 6 C 1.30523 * 109.67574 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.34612 * 180.26500 * 6 5 4 8 8 N 1.46898 * 109.47025 * 269.68289 * 7 6 5 9 9 C 1.46906 * 111.00394 * 175.29800 * 8 7 6 10 10 C 1.53000 * 112.84415 * 290.68791 * 9 8 7 11 11 N 1.46499 * 109.47471 * 312.16496 * 10 9 8 12 12 C 1.34781 * 120.00294 * 174.70445 * 11 10 9 13 13 O 1.21279 * 119.99315 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.99955 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47046 * 180.02562 * 14 12 11 16 16 C 1.76204 * 100.00091 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99943 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99904 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99743 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00036 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47295 * 89.99567 * 20 18 16 22 22 H 1.48496 * 109.47293 * 209.99908 * 20 18 16 23 23 H 1.48507 * 109.47206 * 329.99876 * 20 18 16 24 24 C 1.53781 * 113.61788 * 159.38224 * 9 8 7 25 25 C 1.53777 * 87.07996 * 220.02030 * 24 9 8 26 26 C 1.53778 * 87.08434 * 25.42958 * 25 24 9 27 27 H 1.08988 * 109.47426 * 269.99626 * 1 2 3 28 28 H 1.08997 * 109.47467 * 30.00253 * 1 2 3 29 29 H 1.09005 * 109.46826 * 150.00075 * 1 2 3 30 30 H 1.07998 * 126.34921 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47371 * 29.68356 * 7 6 5 32 32 H 1.09002 * 109.47240 * 149.68420 * 7 6 5 33 33 H 1.00904 * 111.00464 * 299.25005 * 8 7 6 34 34 H 1.09001 * 109.47516 * 72.17033 * 10 9 8 35 35 H 1.09000 * 109.46832 * 192.17196 * 10 9 8 36 36 H 0.97001 * 120.00157 * 354.71505 * 11 10 9 37 37 H 1.08999 * 109.47167 * 300.00391 * 14 12 11 38 38 H 1.09002 * 109.47063 * 60.00097 * 14 12 11 39 39 H 0.97005 * 120.00009 * 179.97438 * 19 18 16 40 40 H 1.09002 * 113.60958 * 334.56902 * 24 9 8 41 41 H 1.08998 * 113.61400 * 105.46474 * 24 9 8 42 42 H 1.09002 * 113.61359 * 270.88516 * 25 24 9 43 43 H 1.08993 * 113.69253 * 139.99043 * 25 24 9 44 44 H 1.08998 * 113.61735 * 220.01922 * 26 25 24 45 45 H 1.09008 * 113.61408 * 89.11661 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6431 0.0006 5 7 3.5091 -0.6428 0.0004 6 6 2.2801 -1.0823 -0.0009 7 6 1.8478 -2.5259 0.0041 8 7 1.7035 -2.9986 -1.3792 9 6 1.3911 -4.4336 -1.4155 10 6 2.5650 -5.3085 -0.9713 11 7 3.7841 -4.8760 -1.6590 12 6 4.9697 -5.4345 -1.3443 13 8 5.0271 -6.2955 -0.4921 14 6 6.2238 -4.9891 -2.0513 15 16 7.6391 -5.9190 -1.4125 16 6 8.9302 -5.2176 -2.3851 17 1 8.7041 -4.4488 -3.1090 18 6 10.2378 -5.6532 -2.2208 19 7 11.2023 -5.1289 -2.9470 20 14 10.6288 -6.9836 -0.9691 21 1 10.5286 -8.3166 -1.6158 22 1 12.0066 -6.7868 -0.4515 23 1 9.6617 -6.9050 0.1552 24 6 0.7443 -4.8902 -2.7338 25 6 -0.1742 -5.7828 -1.8827 26 6 0.0618 -4.7921 -0.7304 27 1 -0.3633 -0.0001 1.0275 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.9701 2.1170 0.0004 31 1 2.5976 -3.1280 0.5174 32 1 0.8924 -2.6174 0.5208 33 1 1.0047 -2.4639 -1.8731 34 1 2.7022 -5.2131 0.1059 35 1 2.3573 -6.3491 -1.2204 36 1 3.7381 -4.1875 -2.3407 37 1 6.1222 -5.1719 -3.1210 38 1 6.3800 -3.9243 -1.8779 39 1 12.1162 -5.4331 -2.8319 40 1 0.2156 -4.0949 -3.2592 41 1 1.4199 -5.4498 -3.3807 42 1 0.2339 -6.7760 -1.6950 43 1 -1.2063 -5.8084 -2.2320 44 1 0.1864 -5.2726 0.2400 45 1 -0.6536 -3.9699 -0.7081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717147512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:58 Heat of formation + Delta-G solvation = 43.758681 kcal Electronic energy + Delta-G solvation = -26982.572014 eV Core-core repulsion = 23162.605369 eV Total energy + Delta-G solvation = -3819.966645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.06189 -41.30462 -40.03090 -36.23257 -35.41147 -35.15016 -34.66936 -31.69255 -31.25932 -28.52950 -28.09433 -27.72939 -27.16706 -26.24689 -23.44820 -23.31307 -21.79167 -21.62901 -20.19708 -19.54276 -18.13465 -17.78067 -17.73494 -17.23993 -17.13867 -16.95748 -16.47882 -16.20088 -15.94653 -15.63552 -15.42856 -15.22388 -14.92060 -14.61100 -14.40396 -14.23924 -13.98405 -13.70038 -13.48451 -13.34790 -13.17980 -13.13261 -12.98835 -12.64063 -12.53978 -12.45384 -12.02719 -11.86689 -11.54910 -11.28941 -11.22750 -11.16533 -11.06087 -10.97445 -10.54681 -10.32738 -10.02833 -9.45425 -8.98545 -8.51132 -6.21787 0.82923 0.99724 1.31178 1.47292 1.56639 1.60917 1.61738 1.89389 2.24676 2.29699 2.72030 2.86721 3.01952 3.34958 3.49213 3.61785 3.64946 3.77288 3.89084 3.93764 3.98150 4.03105 4.22792 4.35373 4.39553 4.48228 4.48818 4.59403 4.65938 4.68297 4.74693 4.81303 4.88846 4.90340 5.10737 5.12849 5.15890 5.19746 5.38084 5.50093 5.71195 5.82914 6.01638 6.11564 6.35045 6.54802 6.93476 7.24807 7.79896 8.61884 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.002915 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.105130 B = 9601.690236 C =11474.987115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.470 5.470 3 C 0.162 3.838 4 N -0.360 5.360 5 N -0.337 5.337 6 C 0.179 3.821 7 C 0.158 3.842 8 N -0.673 5.673 9 C 0.088 3.912 10 C 0.149 3.851 11 N -0.696 5.696 12 C 0.535 3.465 13 O -0.566 6.566 14 C -0.110 4.110 15 S -0.169 6.169 16 C -0.531 4.531 17 H 0.057 0.943 18 C 0.044 3.956 19 N -0.919 5.919 20 Si 0.918 3.082 21 H -0.258 1.258 22 H -0.258 1.258 23 H -0.238 1.238 24 C -0.125 4.125 25 C -0.137 4.137 26 C -0.153 4.153 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.260 0.740 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.358 0.642 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.416 0.584 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.277 0.723 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.879 9.194 3.954 39.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.161 5.161 3 C -0.126 4.126 4 N -0.198 5.198 5 N -0.177 5.177 6 C -0.090 4.090 7 C 0.027 3.973 8 N -0.306 5.306 9 C -0.003 4.003 10 C 0.024 3.976 11 N -0.349 5.349 12 C 0.320 3.680 13 O -0.445 6.445 14 C -0.261 4.261 15 S 0.057 5.943 16 C -0.678 4.678 17 H 0.076 0.924 18 C -0.161 4.161 19 N -0.557 5.557 20 Si 0.739 3.261 21 H -0.183 1.183 22 H -0.182 1.182 23 H -0.162 1.162 24 C -0.163 4.163 25 C -0.175 4.175 26 C -0.193 4.193 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.275 0.725 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.179 0.821 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -35.464 7.734 5.214 36.670 hybrid contribution -1.090 1.203 -0.818 1.818 sum -36.554 8.937 4.396 37.887 Atomic orbital electron populations 1.22544 0.72191 1.07272 1.05825 1.46469 1.10766 1.05376 1.53473 1.27228 0.86305 0.96672 1.02436 1.74224 1.21264 1.03615 1.20715 1.74260 1.20042 1.03777 1.19610 1.24977 0.86946 0.93166 1.03960 1.20056 1.01552 0.84165 0.91565 1.59907 1.54319 1.02987 1.13412 1.22471 0.92108 0.86410 0.99322 1.21146 0.82327 0.97635 0.96456 1.45502 1.05316 1.41810 1.42241 1.19830 0.84830 0.81175 0.82123 1.90664 1.86739 1.33123 1.33967 1.23234 0.94597 1.04147 1.04150 1.84542 1.00553 1.54464 1.54712 1.22476 0.94492 1.26139 1.24721 0.92428 1.25614 0.94852 0.98303 0.97369 1.70025 1.01364 1.43468 1.40816 0.85823 0.79724 0.79698 0.80846 1.18295 1.18188 1.16155 1.23152 0.98177 1.00052 0.94953 1.22741 1.00784 0.97726 0.96209 1.23604 0.95972 1.00767 0.98965 0.88456 0.86279 0.87791 0.72450 0.90172 0.89506 0.82101 0.92557 0.91006 0.74722 0.87175 0.88114 0.91325 0.87726 0.91731 0.90607 0.89450 0.90983 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.06 10.89 127.77 1.39 1.33 16 2 N -0.47 -5.45 3.15 -542.09 -1.71 -7.15 16 3 C 0.16 2.58 12.74 180.11 2.30 4.87 16 4 N -0.36 -10.47 12.21 -59.99 -0.73 -11.21 16 5 N -0.34 -10.59 12.21 -50.16 -0.61 -11.20 16 6 C 0.18 3.55 7.58 137.98 1.05 4.60 16 7 C 0.16 2.23 5.47 85.56 0.47 2.70 16 8 N -0.67 -7.94 5.76 -471.54 -2.72 -10.66 16 9 C 0.09 0.99 0.80 4.05 0.00 1.00 16 10 C 0.15 3.07 4.62 86.38 0.40 3.47 16 11 N -0.70 -18.73 5.38 -463.06 -2.49 -21.22 16 12 C 0.54 20.37 7.85 87.65 0.69 21.06 16 13 O -0.57 -25.60 15.86 -3.03 -0.05 -25.65 16 14 C -0.11 -4.72 6.16 71.23 0.44 -4.28 16 15 S -0.17 -9.19 18.55 -56.49 -1.05 -10.24 16 16 C -0.53 -32.99 10.04 67.96 0.68 -32.30 16 17 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 18 C 0.04 2.70 5.50 84.86 0.47 3.17 16 19 N -0.92 -58.60 13.97 21.65 0.30 -58.30 16 20 Si 0.92 47.19 27.74 68.60 1.90 49.10 16 21 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.24 -12.26 6.74 99.48 0.67 -11.59 16 24 C -0.13 -1.10 7.33 31.12 0.23 -0.87 16 25 C -0.14 -0.97 7.73 31.12 0.24 -0.73 16 26 C -0.15 -0.92 6.44 31.12 0.20 -0.72 16 27 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.10 -0.44 7.82 -2.38 -0.02 -0.46 16 30 H 0.26 1.30 8.06 -2.91 -0.02 1.27 16 31 H 0.08 1.68 6.97 -2.39 -0.02 1.66 16 32 H 0.09 0.58 7.26 -2.39 -0.02 0.56 16 33 H 0.36 2.45 8.51 -89.69 -0.76 1.69 16 34 H 0.06 1.33 7.40 -2.39 -0.02 1.31 16 35 H 0.07 1.53 7.36 -2.39 -0.02 1.51 16 36 H 0.42 10.00 8.10 -92.71 -0.75 9.25 16 37 H 0.11 4.34 8.14 -2.40 -0.02 4.32 16 38 H 0.10 4.29 8.14 -2.39 -0.02 4.27 16 39 H 0.28 16.28 8.31 -92.70 -0.77 15.51 16 40 H 0.10 0.54 7.95 -2.39 -0.02 0.52 16 41 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 42 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 43 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 0.54 8.10 -2.39 -0.02 0.52 16 45 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 Total: -1.00 -92.78 387.42 0.87 -91.90 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -0.53 Total: 11.36 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 8.55 Total: 3.28 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -7.95 Total: -119.74 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.90 Total: 49.10 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.05 Total: -10.24 kcal Total: -92.78 0.87 -91.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717147512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.662 kcal (2) G-P(sol) polarization free energy of solvation -92.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds