Wall clock time and date at job start Tue Mar 31 2020 23:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48495 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47080 * 300.00406 * 3 2 1 6 6 H 1.48505 * 109.47051 * 60.00262 * 3 2 1 7 7 C 1.38818 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99639 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00054 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47402 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.51207 * 60.10134 * 11 10 9 13 13 C 1.53717 * 109.48623 * 180.35917 * 11 10 9 14 14 N 1.47150 * 108.16147 * 172.39883 * 13 11 10 15 15 C 1.34778 * 120.98041 * 129.43370 * 14 13 11 16 16 O 1.21279 * 119.99691 * 359.71756 * 15 14 13 17 17 C 1.50699 * 119.99801 * 179.71860 * 15 14 13 18 18 C 1.53005 * 109.46684 * 179.97438 * 17 15 14 19 19 N 1.46498 * 109.46656 * 179.97438 * 18 17 15 20 20 C 1.33875 * 122.76811 * 269.70996 * 19 18 17 21 21 O 1.21235 * 125.39250 * 0.23270 * 20 19 18 22 22 C 1.51315 * 109.21241 * 180.27054 * 20 19 18 23 23 C 1.54236 * 103.55147 * 0.02562 * 22 20 19 24 24 C 1.33884 * 122.76141 * 90.00570 * 19 18 17 25 25 O 1.21228 * 125.39038 * 359.70356 * 24 19 18 26 26 C 1.47156 * 118.03693 * 309.16172 * 14 13 11 27 27 C 1.53295 * 108.38243 * 50.78358 * 26 14 13 28 28 O 1.42957 * 109.22575 * 307.69852 * 27 26 14 29 29 H 0.97000 * 119.99655 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00147 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47286 * 59.99491 * 10 9 7 32 32 H 1.08999 * 109.47213 * 300.00027 * 10 9 7 33 33 H 1.09002 * 109.83653 * 52.71929 * 13 11 10 34 34 H 1.08996 * 109.74476 * 292.03026 * 13 11 10 35 35 H 1.08997 * 109.46976 * 60.00471 * 17 15 14 36 36 H 1.08996 * 109.47502 * 299.99642 * 17 15 14 37 37 H 1.08997 * 109.46937 * 60.00560 * 18 17 15 38 38 H 1.08988 * 109.47240 * 299.99854 * 18 17 15 39 39 H 1.08995 * 110.60439 * 241.48575 * 22 20 19 40 40 H 1.09001 * 110.60396 * 118.51323 * 22 20 19 41 41 H 1.08996 * 110.59909 * 241.48367 * 23 22 20 42 42 H 1.08992 * 110.60565 * 118.51801 * 23 22 20 43 43 H 1.08998 * 109.68193 * 170.50873 * 26 14 13 44 44 H 1.09003 * 109.67687 * 291.06192 * 26 14 13 45 45 H 1.08998 * 109.51488 * 67.62496 * 27 26 14 46 46 H 1.09004 * 109.51258 * 187.72183 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.4383 -4.7635 -0.8932 13 6 1.8320 -6.1511 0.0068 14 7 0.8599 -7.2404 0.1910 15 6 0.8490 -8.3071 -0.6327 16 8 1.6449 -8.3769 -1.5450 17 6 -0.1523 -9.4131 -0.4199 18 6 0.0483 -10.4942 -1.4839 19 7 -0.9247 -11.5696 -1.2766 20 6 -0.6750 -12.6336 -0.5034 21 8 0.3537 -12.8324 0.1065 22 6 -1.8798 -13.5491 -0.5120 23 6 -2.8794 -12.8223 -1.4347 24 6 -2.1348 -11.5722 -1.8496 25 8 -2.5654 -10.7095 -2.5844 26 6 -0.0960 -7.1334 1.3047 27 6 -0.7667 -5.7567 1.2355 28 8 0.2409 -4.7452 1.1644 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6841 -3.7150 0.8888 32 1 2.6854 -3.7142 -0.8911 33 1 2.5506 -6.1580 0.8264 34 1 2.3542 -6.2814 -0.9410 35 1 -1.1617 -9.0094 -0.4986 36 1 -0.0103 -9.8463 0.5701 37 1 1.0577 -10.8980 -1.4056 38 1 -0.0940 -10.0607 -2.4736 39 1 -2.2899 -13.6528 0.4925 40 1 -1.6178 -14.5240 -0.9232 41 1 -3.7870 -12.5642 -0.8891 42 1 -3.1146 -13.4358 -2.3043 43 1 -0.8511 -7.9145 1.2166 44 1 0.4318 -7.2374 2.2527 45 1 -1.3989 -5.7038 0.3492 46 1 -1.3756 -5.6031 2.1266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717173742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:15 Heat of formation + Delta-G solvation = -149.873055 kcal Electronic energy + Delta-G solvation = -29445.720100 eV Core-core repulsion = 25142.311331 eV Total energy + Delta-G solvation = -4303.408769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.90915 -41.51290 -39.66412 -39.65283 -37.01615 -36.70940 -35.83052 -35.22393 -33.95171 -32.21478 -31.40773 -29.35282 -27.55959 -27.08993 -25.63141 -24.79292 -23.85064 -23.29569 -22.31244 -20.52947 -20.28633 -19.27474 -18.82656 -18.05191 -17.74860 -17.67874 -17.56375 -17.10131 -16.90700 -16.61594 -16.08977 -15.93908 -15.69883 -15.30471 -15.15845 -15.08385 -15.02814 -14.85823 -14.70849 -14.28034 -14.19621 -13.93679 -13.77307 -13.44113 -13.34789 -12.98253 -12.83009 -12.67641 -12.48027 -12.28814 -12.07229 -12.04346 -11.91056 -11.71802 -11.66781 -11.27525 -11.09210 -11.08202 -10.98685 -10.88531 -9.71768 -9.02990 -7.95802 -5.25545 0.49058 1.32860 1.37363 1.46604 1.48197 1.58454 1.65306 1.83764 2.54958 2.71362 3.22017 3.25345 3.32409 3.37900 3.49470 3.60802 3.65719 3.76758 3.85193 3.90066 4.00968 4.08926 4.20538 4.22290 4.29405 4.32796 4.37688 4.44644 4.48665 4.61332 4.70602 4.71723 4.82064 4.82272 4.91378 4.94317 4.98018 5.05217 5.17010 5.46967 5.80492 6.14433 6.19362 6.26149 6.31816 6.71442 6.88739 7.31740 8.05267 8.30379 9.28146 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.001970 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.507776 B =14210.849538 C =14450.076314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.160 3.840 11 C 0.088 3.912 12 H 0.047 0.953 13 C 0.095 3.905 14 N -0.614 5.614 15 C 0.519 3.481 16 O -0.578 6.578 17 C -0.140 4.140 18 C 0.114 3.886 19 N -0.579 5.579 20 C 0.520 3.480 21 O -0.522 6.522 22 C -0.139 4.139 23 C -0.140 4.140 24 C 0.518 3.482 25 O -0.524 6.524 26 C 0.075 3.925 27 C 0.037 3.963 28 O -0.386 6.386 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 -34.436 2.558 35.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.033 3.967 11 C 0.029 3.971 12 H 0.065 0.935 13 C -0.029 4.029 14 N -0.347 5.347 15 C 0.308 3.692 16 O -0.458 6.458 17 C -0.181 4.181 18 C -0.008 4.008 19 N -0.321 5.321 20 C 0.312 3.688 21 O -0.396 6.396 22 C -0.178 4.178 23 C -0.179 4.179 24 C 0.310 3.690 25 O -0.398 6.398 26 C -0.047 4.047 27 C -0.040 4.040 28 O -0.305 6.305 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.144 0.856 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.071 -33.892 2.152 34.906 hybrid contribution 0.331 1.471 -0.420 1.565 sum -7.741 -32.420 1.732 33.377 Atomic orbital electron populations 1.69853 1.06724 1.26031 1.59422 1.25649 0.96496 1.01317 1.03597 0.84997 0.78202 0.79391 0.76688 1.18904 1.21968 1.21874 1.19712 0.91613 0.85208 1.41317 0.90360 1.42405 1.05712 1.00820 1.89335 1.20774 0.93076 0.83980 0.98904 1.22541 0.92285 0.94165 0.88126 0.93499 1.22184 0.91584 0.84901 1.04206 1.48255 1.35174 1.20154 1.31113 1.20874 0.84644 0.83010 0.80640 1.90705 1.42611 1.79413 1.33076 1.21886 0.99758 0.93957 1.02482 1.21265 0.92985 0.86983 0.99592 1.47034 1.17496 1.22482 1.45128 1.21825 0.89953 0.81582 0.75466 1.90800 1.30713 1.75215 1.42853 1.22612 0.90292 0.99582 1.05352 1.22612 0.99973 0.91902 1.03439 1.21867 0.80882 0.89059 0.77212 1.90813 1.70878 1.42919 1.35151 1.22725 0.93057 0.99217 0.89665 1.23231 0.90138 0.86744 1.03903 1.88105 1.47129 1.52914 1.42369 0.93982 0.79290 0.95060 0.93996 0.89305 0.88943 0.86693 0.86088 0.89285 0.89754 0.83274 0.83704 0.83385 0.83773 0.85614 0.88680 0.93222 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 3 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.25 -14.38 9.99 84.04 0.84 -13.54 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.74 -40.03 5.49 -343.45 -1.89 -41.91 16 10 C 0.16 6.78 5.96 86.38 0.51 7.30 16 11 C 0.09 3.11 2.88 30.84 0.09 3.19 16 12 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 13 C 0.09 2.77 5.96 86.50 0.52 3.28 16 14 N -0.61 -14.99 3.01 -816.53 -2.46 -17.45 16 15 C 0.52 13.15 7.71 87.66 0.68 13.83 16 16 O -0.58 -19.26 15.45 -3.03 -0.05 -19.30 16 17 C -0.14 -2.39 4.40 29.85 0.13 -2.25 16 18 C 0.11 2.18 4.84 86.38 0.42 2.60 16 19 N -0.58 -7.82 2.55 -756.66 -1.93 -9.75 16 20 C 0.52 5.82 8.08 87.99 0.71 6.53 16 21 O -0.52 -10.31 17.47 -2.89 -0.05 -10.36 16 22 C -0.14 0.12 7.03 30.46 0.21 0.33 16 23 C -0.14 0.05 7.03 30.46 0.21 0.27 16 24 C 0.52 6.23 8.08 87.99 0.71 6.94 16 25 O -0.52 -11.23 17.48 -2.87 -0.05 -11.28 16 26 C 0.08 1.31 6.54 86.35 0.56 1.88 16 27 C 0.04 0.86 6.98 72.08 0.50 1.37 16 28 O -0.39 -13.56 10.13 -148.98 -1.51 -15.07 16 29 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.38 21.81 7.54 -92.71 -0.70 21.11 16 31 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.09 2.89 7.08 -2.39 -0.02 2.87 16 35 H 0.11 1.64 7.66 -2.39 -0.02 1.63 16 36 H 0.12 1.57 8.02 -2.39 -0.02 1.55 16 37 H 0.09 1.93 7.78 -2.39 -0.02 1.92 16 38 H 0.08 1.92 7.79 -2.39 -0.02 1.90 16 39 H 0.15 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.15 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.15 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.14 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.13 1.28 6.05 -2.39 -0.01 1.27 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -88.12 384.11 1.25 -86.87 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.31 Total: 22.40 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 6.57 Total: 27.50 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -6.00 Total: -130.26 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -1.66 Total: -56.02 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -88.12 1.25 -86.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717173742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.007 kcal (2) G-P(sol) polarization free energy of solvation -88.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds