Wall clock time and date at job start Tue Mar 31 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47374 * 269.99446 * 3 2 1 5 5 H 1.48503 * 109.47136 * 30.00029 * 3 2 1 6 6 H 1.48506 * 109.47088 * 149.99812 * 3 2 1 7 7 C 1.38813 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99806 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00222 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47049 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47452 * 305.00111 * 11 10 9 13 13 C 1.52997 * 109.47131 * 65.00110 * 11 10 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 11 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 13 17 17 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 18 18 H 1.08996 * 109.47452 * 300.00000 * 17 16 15 19 19 N 1.46507 * 109.47258 * 179.97438 * 17 16 15 20 20 C 1.34778 * 119.99609 * 85.00044 * 19 17 16 21 21 O 1.21544 * 120.00172 * 0.02562 * 20 19 17 22 22 C 1.47846 * 119.99759 * 180.02562 * 20 19 17 23 23 C 1.40126 * 120.96257 * 89.71938 * 22 20 19 24 24 F 1.35107 * 120.51498 * 0.02562 * 23 22 20 25 25 C 1.38427 * 118.96170 * 179.77543 * 23 22 20 26 26 N 1.31771 * 120.92928 * 0.51289 * 25 23 22 27 27 C 1.31770 * 122.13954 * 359.73591 * 26 25 23 28 28 C 1.38427 * 120.93379 * 0.02562 * 27 26 25 29 29 F 1.35098 * 120.52411 * 179.97438 * 28 27 26 30 30 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99560 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46877 * 59.99372 * 10 9 7 33 33 H 1.08997 * 109.46643 * 299.99696 * 10 9 7 34 34 H 1.09001 * 109.47502 * 60.00153 * 13 11 10 35 35 H 1.09001 * 109.47289 * 299.99950 * 13 11 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 14 13 11 37 37 H 1.09000 * 109.47050 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 39 39 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 40 40 H 1.09001 * 109.47289 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 42 42 H 0.97001 * 120.00071 * 265.00501 * 19 17 16 43 43 H 1.07997 * 119.53841 * 180.27373 * 25 23 22 44 44 H 1.08004 * 119.53102 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3801 -4.7126 0.8432 13 6 0.2686 -4.8114 -1.3058 14 6 -0.7252 -5.9748 -1.3055 15 6 0.0362 -7.2959 -1.1801 16 6 0.8315 -7.3041 0.1269 17 6 1.8253 -6.1408 0.1265 18 1 2.5091 -6.2474 -0.7155 19 7 2.5864 -6.1483 1.3784 20 6 3.6863 -6.9187 1.4936 21 8 4.0470 -7.6068 0.5589 22 6 4.4540 -6.9267 2.7571 23 6 4.1476 -7.8327 3.7811 24 9 3.1403 -8.7208 3.6327 25 6 4.8964 -7.8071 4.9451 26 7 5.8773 -6.9409 5.1004 27 6 6.1964 -6.0682 4.1662 28 6 5.5052 -6.0242 2.9676 29 9 5.8390 -5.1257 2.0156 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7144 0.8904 33 1 2.6847 -3.7145 -0.8895 34 1 0.9524 -4.9186 -2.1479 35 1 -0.2734 -3.8700 -1.3955 36 1 -1.4090 -5.8681 -0.4635 37 1 -1.2921 -5.9686 -2.2365 38 1 -0.6718 -8.1247 -1.1803 39 1 0.7200 -7.4025 -2.0222 40 1 1.3736 -8.2455 0.2164 41 1 0.1477 -7.1976 0.9690 42 1 2.2987 -5.5989 2.1242 43 1 4.6711 -8.5041 5.7386 44 1 7.0087 -5.3775 4.3380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722941877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:12 Heat of formation + Delta-G solvation = -91.296168 kcal Electronic energy + Delta-G solvation = -29960.539278 eV Core-core repulsion = 25548.583078 eV Total energy + Delta-G solvation = -4411.956200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.58461 -49.46788 -40.76647 -39.89211 -38.24645 -34.66246 -34.34404 -33.02762 -31.92663 -31.25379 -29.73721 -29.32652 -25.80517 -25.08540 -24.05651 -23.10738 -22.41896 -20.89018 -20.65964 -19.99330 -18.68089 -18.60128 -18.23561 -17.20117 -16.88668 -16.36727 -16.20430 -16.10293 -15.81546 -15.05002 -14.87500 -14.62499 -14.38285 -14.21953 -14.13611 -13.86389 -13.79199 -13.65319 -13.33273 -13.08395 -12.78825 -12.64438 -12.43461 -11.89576 -11.59202 -11.18713 -10.94762 -10.90805 -10.87444 -10.75817 -10.48629 -10.33738 -10.24659 -10.13657 -10.03299 -9.92811 -9.68279 -9.46660 -9.10066 -8.88377 -6.94446 -5.79088 -3.07505 0.10403 0.18176 2.13312 2.71283 2.87068 3.10428 3.42076 3.47608 3.48822 3.48950 3.78367 4.08761 4.15867 4.44417 4.54229 4.74952 4.83379 4.91679 4.96763 5.01560 5.19263 5.21218 5.30074 5.49820 5.55045 5.57976 5.61410 5.68482 5.83557 5.89691 6.02597 6.07880 6.13728 6.19909 6.24190 6.31957 6.38395 6.52157 6.64472 6.73010 6.85003 7.06172 7.23922 7.68615 7.86562 8.39915 9.51427 10.08316 10.43439 11.43737 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.003857 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.076025 B = 7258.367271 C = 9589.800974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.106 4.106 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.127 4.127 17 C 0.153 3.847 18 H 0.092 0.908 19 N -0.701 5.701 20 C 0.566 3.434 21 O -0.516 6.516 22 C -0.154 4.154 23 C 0.112 3.888 24 F -0.111 7.111 25 C 0.066 3.934 26 N -0.418 5.418 27 C 0.068 3.932 28 C 0.118 3.882 29 F -0.104 7.104 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.405 0.595 43 H 0.183 0.817 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 -18.468 7.815 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.144 4.144 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.165 4.165 17 C 0.049 3.951 18 H 0.110 0.890 19 N -0.350 5.350 20 C 0.349 3.651 21 O -0.391 6.391 22 C -0.167 4.167 23 C 0.090 3.910 24 F -0.089 7.089 25 C -0.093 4.093 26 N -0.125 5.125 27 C -0.090 4.090 28 C 0.096 3.904 29 F -0.082 7.082 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.241 0.759 43 H 0.200 0.800 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.435 -18.832 7.855 21.395 hybrid contribution -0.547 1.275 -0.608 1.514 sum 5.888 -17.557 7.248 19.886 Atomic orbital electron populations 1.69653 1.05081 1.25642 1.57854 1.24714 0.95501 0.97620 1.03009 0.86211 0.78675 0.83879 0.77567 1.21703 1.21766 1.20777 1.19217 0.91015 0.84168 1.42607 0.91303 1.42350 1.05796 0.99837 1.89474 1.20663 0.92976 0.85385 0.97921 1.21610 0.97746 0.93093 0.99490 0.90537 1.21495 0.97659 0.98968 0.96321 1.21605 0.98078 0.94448 1.01803 1.21481 0.98773 0.97785 0.97188 1.21897 0.97819 0.98188 0.98607 1.21163 0.92741 0.95456 0.85760 0.89045 1.46079 1.26464 1.44668 1.17816 1.17586 0.80803 0.80758 0.85948 1.90841 1.68331 1.41363 1.38574 1.20688 0.99960 0.98890 0.97137 1.18609 0.88581 0.89481 0.94350 1.91609 1.56722 1.64846 1.95727 1.23015 0.91914 0.98603 0.95764 1.67657 1.13218 1.02200 1.29459 1.23072 1.00137 0.98296 0.87525 1.18665 0.94723 0.88628 0.88410 1.91664 1.90774 1.63850 1.61935 0.93529 0.78197 0.96520 0.96284 0.91949 0.90063 0.91964 0.91962 0.91996 0.91822 0.91730 0.91682 0.75950 0.80035 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.94 5.33 -59.91 -0.32 -18.25 16 10 C 0.16 3.11 5.56 -4.04 -0.02 3.09 16 11 C -0.10 -1.53 1.80 -90.62 -0.16 -1.69 16 12 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.58 5.08 -26.73 -0.14 -1.72 16 14 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 15 C -0.11 -1.27 5.92 -26.73 -0.16 -1.43 16 16 C -0.13 -1.52 5.49 -26.73 -0.15 -1.67 16 17 C 0.15 2.10 1.90 -67.93 -0.13 1.97 16 18 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 19 N -0.70 -9.24 4.30 -54.75 -0.24 -9.47 16 20 C 0.57 8.07 6.70 -12.33 -0.08 7.99 16 21 O -0.52 -8.97 16.77 5.33 0.09 -8.88 16 22 C -0.15 -1.82 5.68 -104.55 -0.59 -2.41 16 23 C 0.11 1.11 7.34 -38.80 -0.28 0.82 16 24 F -0.11 -1.15 16.92 2.25 0.04 -1.11 16 25 C 0.07 0.52 11.16 -17.51 -0.20 0.32 16 26 N -0.42 -3.71 10.33 -13.18 -0.14 -3.84 16 27 C 0.07 0.59 11.16 -17.51 -0.20 0.40 16 28 C 0.12 1.30 7.34 -38.80 -0.28 1.02 16 29 F -0.10 -1.35 16.92 2.25 0.04 -1.31 16 30 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 32 H 0.02 0.33 7.30 -51.93 -0.38 -0.04 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.41 7.18 -51.93 -0.37 1.03 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.41 4.83 8.38 -40.82 -0.34 4.49 16 43 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -32.50 373.86 -7.95 -40.45 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.96 Total: 8.74 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.80 Total: -2.17 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.03 Total: -58.62 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.50 -7.95 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722941877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.848 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds