Wall clock time and date at job start Tue Mar 31 2020 23:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47374 * 269.99446 * 3 2 1 5 5 H 1.48503 * 109.47136 * 30.00029 * 3 2 1 6 6 H 1.48506 * 109.47088 * 149.99812 * 3 2 1 7 7 C 1.38813 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99806 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00222 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47049 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47452 * 305.00111 * 11 10 9 13 13 C 1.52997 * 109.47131 * 65.00110 * 11 10 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 11 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 13 17 17 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 18 18 H 1.08996 * 109.47452 * 300.00000 * 17 16 15 19 19 N 1.46507 * 109.47258 * 179.97438 * 17 16 15 20 20 C 1.34778 * 119.99609 * 85.00044 * 19 17 16 21 21 O 1.21544 * 120.00172 * 0.02562 * 20 19 17 22 22 C 1.47846 * 119.99759 * 180.02562 * 20 19 17 23 23 C 1.40126 * 120.96257 * 89.71938 * 22 20 19 24 24 F 1.35107 * 120.51498 * 0.02562 * 23 22 20 25 25 C 1.38427 * 118.96170 * 179.77543 * 23 22 20 26 26 N 1.31771 * 120.92928 * 0.51289 * 25 23 22 27 27 C 1.31770 * 122.13954 * 359.73591 * 26 25 23 28 28 C 1.38427 * 120.93379 * 0.02562 * 27 26 25 29 29 F 1.35098 * 120.52411 * 179.97438 * 28 27 26 30 30 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99560 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46877 * 59.99372 * 10 9 7 33 33 H 1.08997 * 109.46643 * 299.99696 * 10 9 7 34 34 H 1.09001 * 109.47502 * 60.00153 * 13 11 10 35 35 H 1.09001 * 109.47289 * 299.99950 * 13 11 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 14 13 11 37 37 H 1.09000 * 109.47050 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 39 39 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 40 40 H 1.09001 * 109.47289 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 42 42 H 0.97001 * 120.00071 * 265.00501 * 19 17 16 43 43 H 1.07997 * 119.53841 * 180.27373 * 25 23 22 44 44 H 1.08004 * 119.53102 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3801 -4.7126 0.8432 13 6 0.2686 -4.8114 -1.3058 14 6 -0.7252 -5.9748 -1.3055 15 6 0.0362 -7.2959 -1.1801 16 6 0.8315 -7.3041 0.1269 17 6 1.8253 -6.1408 0.1265 18 1 2.5091 -6.2474 -0.7155 19 7 2.5864 -6.1483 1.3784 20 6 3.6863 -6.9187 1.4936 21 8 4.0470 -7.6068 0.5589 22 6 4.4540 -6.9267 2.7571 23 6 4.1476 -7.8327 3.7811 24 9 3.1403 -8.7208 3.6327 25 6 4.8964 -7.8071 4.9451 26 7 5.8773 -6.9409 5.1004 27 6 6.1964 -6.0682 4.1662 28 6 5.5052 -6.0242 2.9676 29 9 5.8390 -5.1257 2.0156 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7144 0.8904 33 1 2.6847 -3.7145 -0.8895 34 1 0.9524 -4.9186 -2.1479 35 1 -0.2734 -3.8700 -1.3955 36 1 -1.4090 -5.8681 -0.4635 37 1 -1.2921 -5.9686 -2.2365 38 1 -0.6718 -8.1247 -1.1803 39 1 0.7200 -7.4025 -2.0222 40 1 1.3736 -8.2455 0.2164 41 1 0.1477 -7.1976 0.9690 42 1 2.2987 -5.5989 2.1242 43 1 4.6711 -8.5041 5.7386 44 1 7.0087 -5.3775 4.3380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722941877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:11 Heat of formation + Delta-G solvation = -112.148533 kcal Electronic energy + Delta-G solvation = -29961.443504 eV Core-core repulsion = 25548.583078 eV Total energy + Delta-G solvation = -4412.860427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.38493 -50.35285 -41.73638 -40.84036 -39.43685 -36.46785 -35.47931 -33.89983 -33.69910 -31.97111 -31.26626 -30.55464 -27.15802 -26.33753 -24.82353 -24.75610 -23.58590 -22.08704 -21.93196 -21.07424 -19.66459 -19.39359 -19.34807 -18.92671 -17.91403 -17.21538 -17.18265 -16.98945 -16.75494 -16.67043 -16.03278 -15.92756 -15.54181 -15.50142 -15.19864 -14.98514 -14.87591 -14.83055 -14.62125 -14.39667 -14.15489 -13.78170 -13.39866 -13.34582 -12.99302 -12.77544 -12.71668 -12.29865 -12.13237 -12.01591 -11.92339 -11.87285 -11.47858 -11.38399 -11.25128 -11.12157 -10.99657 -10.90668 -10.25616 -10.18708 -9.01609 -7.96989 -5.25479 -0.71327 -0.53418 1.03840 1.46071 1.47248 1.55649 1.71787 2.12818 2.31618 2.53939 2.72665 3.06824 3.18300 3.36349 3.41735 3.47769 3.68612 3.71489 3.86391 4.05382 4.16544 4.19035 4.22602 4.32998 4.37851 4.43318 4.46358 4.51062 4.57850 4.79061 4.81950 4.97676 5.03328 5.06414 5.18733 5.20174 5.22718 5.26532 5.35703 5.40742 5.46649 5.53929 6.13308 6.25351 6.36068 6.76703 7.32585 8.06227 8.32048 9.26080 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.003857 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.076025 B = 7258.367271 C = 9589.800974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.160 3.840 11 C -0.085 4.085 12 H 0.081 0.919 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.110 4.110 16 C -0.119 4.119 17 C 0.159 3.841 18 H 0.072 0.928 19 N -0.696 5.696 20 C 0.565 3.435 21 O -0.554 6.554 22 C -0.169 4.169 23 C 0.107 3.893 24 F -0.115 7.115 25 C 0.088 3.912 26 N -0.424 5.424 27 C 0.085 3.915 28 C 0.098 3.902 29 F -0.122 7.122 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.019 0.981 33 H 0.005 0.995 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.412 0.588 43 H 0.220 0.780 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 -19.548 9.421 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.033 3.967 11 C -0.104 4.104 12 H 0.100 0.900 13 C -0.142 4.142 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.157 4.157 17 C 0.055 3.945 18 H 0.090 0.910 19 N -0.346 5.346 20 C 0.350 3.650 21 O -0.432 6.432 22 C -0.182 4.182 23 C 0.085 3.915 24 F -0.093 7.093 25 C -0.071 4.071 26 N -0.131 5.131 27 C -0.073 4.073 28 C 0.075 3.925 29 F -0.101 7.101 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.036 0.964 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.248 0.752 43 H 0.236 0.764 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.797 -19.925 9.477 23.087 hybrid contribution -0.610 1.565 -1.078 1.995 sum 6.187 -18.360 8.400 21.117 Atomic orbital electron populations 1.69794 1.06412 1.26112 1.59220 1.25476 0.96357 1.00770 1.03460 0.85213 0.77787 0.79773 0.77433 1.21533 1.21849 1.19644 1.19551 0.91254 0.85509 1.41638 0.91365 1.42481 1.05618 1.00715 1.89300 1.20744 0.93632 0.85224 0.97054 1.21444 0.96840 0.92087 1.00067 0.90034 1.21437 0.97961 0.99137 0.95709 1.21546 0.97372 0.93398 1.02802 1.21471 0.98933 0.97933 0.96425 1.21839 0.97405 0.96709 0.99757 1.21032 0.92672 0.95278 0.85526 0.90974 1.46071 1.26302 1.44452 1.17744 1.17946 0.80651 0.79973 0.86460 1.90810 1.69278 1.42958 1.40173 1.20639 1.00458 1.00386 0.96676 1.18719 0.89018 0.89222 0.94557 1.91599 1.56980 1.64920 1.95794 1.23589 0.90167 0.97928 0.95412 1.67811 1.13550 1.02483 1.29220 1.23475 0.99725 0.97994 0.86141 1.18890 0.95523 0.88960 0.89122 1.91614 1.91046 1.64591 1.62834 0.93901 0.78990 0.96358 0.97675 0.92587 0.92820 0.91281 0.90749 0.89632 0.92132 0.92169 0.90417 0.75166 0.76389 0.77167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.17 13.06 21.65 0.28 -57.89 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -37.06 5.33 -343.47 -1.83 -38.89 16 10 C 0.16 6.45 5.56 86.38 0.48 6.93 16 11 C -0.09 -2.63 1.80 -10.79 -0.02 -2.65 16 12 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.10 -3.13 5.08 30.60 0.16 -2.98 16 14 C -0.11 -2.58 5.92 30.60 0.18 -2.40 16 15 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 16 C -0.12 -2.70 5.49 30.59 0.17 -2.53 16 17 C 0.16 4.38 1.90 44.99 0.09 4.47 16 18 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 19 N -0.70 -18.46 4.30 -445.41 -1.92 -20.38 16 20 C 0.57 16.36 6.70 86.79 0.58 16.94 16 21 O -0.55 -19.79 16.77 -3.85 -0.06 -19.86 16 22 C -0.17 -3.93 5.68 -19.82 -0.11 -4.05 16 23 C 0.11 1.95 7.34 22.77 0.17 2.12 16 24 F -0.11 -2.22 16.92 44.97 0.76 -1.46 16 25 C 0.09 1.13 11.16 84.75 0.95 2.07 16 26 N -0.42 -6.34 10.33 -195.62 -2.02 -8.36 16 27 C 0.08 1.31 11.16 84.75 0.95 2.25 16 28 C 0.10 2.10 7.34 22.77 0.17 2.27 16 29 F -0.12 -3.24 16.92 44.97 0.76 -2.48 16 30 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.38 19.81 6.85 -92.70 -0.63 19.18 16 32 H 0.02 0.74 7.30 -2.39 -0.02 0.73 16 33 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.92 7.18 -2.39 -0.02 1.90 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.41 9.76 8.38 -92.71 -0.78 8.99 16 43 H 0.22 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -70.89 373.86 2.88 -68.02 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.36 Total: 29.31 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.23 Total: 3.93 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -5.48 Total: -125.52 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.06 Total: -19.86 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 1.52 Total: -3.94 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -70.89 2.88 -68.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722941877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.132 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds