Wall clock time and date at job start Tue Mar 31 2020 23:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48500 * 109.46737 * 239.99902 * 3 2 1 5 5 H 1.48495 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47262 * 119.99974 * 3 2 1 7 7 C 1.38820 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99537 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99364 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46866 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 304.99717 * 11 10 9 13 13 C 1.53002 * 109.47415 * 65.00069 * 11 10 9 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47232 * 184.99942 * 11 10 9 18 18 H 1.09001 * 109.47289 * 60.00075 * 17 11 10 19 19 N 1.46496 * 109.47294 * 299.99951 * 17 11 10 20 20 C 1.34774 * 120.00256 * 154.99900 * 19 17 11 21 21 O 1.21551 * 120.00341 * 0.02562 * 20 19 17 22 22 C 1.47856 * 120.00135 * 180.02562 * 20 19 17 23 23 C 1.40113 * 120.96180 * 89.71475 * 22 20 19 24 24 F 1.35101 * 120.52312 * 0.02562 * 23 22 20 25 25 C 1.38431 * 118.95827 * 179.77815 * 23 22 20 26 26 N 1.31768 * 120.93110 * 0.50983 * 25 23 22 27 27 C 1.31767 * 122.13968 * 359.74298 * 26 25 23 28 28 C 1.38435 * 120.93094 * 359.97438 * 27 26 25 29 29 F 1.35096 * 120.52063 * 179.97438 * 28 27 26 30 30 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00618 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47101 * 60.00120 * 10 9 7 33 33 H 1.09001 * 109.47363 * 299.99361 * 10 9 7 34 34 H 1.08992 * 109.47063 * 59.99950 * 13 11 10 35 35 H 1.09004 * 109.46733 * 299.99664 * 13 11 10 36 36 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 37 37 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 40 40 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 41 41 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 42 42 H 0.97001 * 119.99753 * 334.99414 * 19 17 11 43 43 H 1.08004 * 119.53531 * 180.25337 * 25 23 22 44 44 H 1.08000 * 119.53792 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3793 -4.7131 0.8415 13 6 0.2695 -4.8109 -1.3078 14 6 -0.7252 -5.9735 -1.3081 15 6 0.0350 -7.2952 -1.1821 16 6 0.8294 -7.3041 0.1255 17 6 1.8245 -6.1412 0.1256 18 1 2.3903 -6.1475 1.0572 19 7 2.7444 -6.2846 -1.0055 20 6 3.8437 -7.0552 -0.8865 21 8 4.0717 -7.6316 0.1590 22 6 4.7724 -7.1996 -2.0279 23 6 5.8460 -6.3159 -2.1999 24 9 6.0546 -5.3106 -1.3218 25 6 6.6927 -6.4921 -3.2808 26 7 6.4939 -7.4667 -4.1450 27 6 5.4945 -8.3171 -4.0249 28 6 4.6009 -8.2208 -2.9720 29 9 3.5789 -9.0969 -2.8571 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6846 -3.7146 -0.8895 34 1 0.9539 -4.9176 -2.1493 35 1 -0.2726 -3.8695 -1.3973 36 1 -1.4097 -5.8664 -0.4665 37 1 -1.2908 -5.9675 -2.2399 38 1 -0.6734 -8.1235 -1.1828 39 1 0.7195 -7.4023 -2.0237 40 1 1.3714 -8.2455 0.2150 41 1 0.1450 -7.1969 0.9670 42 1 2.5622 -5.8250 -1.8400 43 1 7.5257 -5.8189 -3.4200 44 1 5.3712 -9.1007 -4.7578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722941879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:15 Heat of formation + Delta-G solvation = -88.242516 kcal Electronic energy + Delta-G solvation = -30301.607835 eV Core-core repulsion = 25889.784052 eV Total energy + Delta-G solvation = -4411.823784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.59237 -49.47676 -40.83519 -40.02143 -38.23318 -34.69700 -33.91456 -32.95380 -31.94941 -31.26345 -29.94952 -29.46550 -25.83349 -25.08515 -24.06541 -23.05889 -22.40815 -21.60852 -20.63069 -19.09695 -18.85292 -18.61383 -18.41709 -17.14940 -16.81797 -16.37850 -16.24064 -15.82817 -15.77166 -15.36584 -14.88368 -14.70985 -14.56979 -14.19127 -14.04352 -13.96312 -13.69362 -13.65337 -13.32093 -13.09941 -12.81343 -12.61608 -12.16699 -12.05882 -11.75608 -11.46852 -10.92149 -10.91780 -10.83809 -10.75253 -10.46491 -10.32921 -10.26004 -10.05078 -10.03415 -9.92848 -9.66012 -9.47731 -9.10566 -8.87768 -6.94241 -5.78556 -3.07031 0.09619 0.17020 2.14441 2.72412 2.86667 3.09868 3.42989 3.47561 3.48037 3.48445 3.77357 4.10403 4.15127 4.43741 4.55035 4.76078 4.82423 4.85670 4.90934 4.98001 5.18414 5.20150 5.27149 5.51793 5.55165 5.57765 5.61276 5.68761 5.74801 5.88754 5.97576 6.07322 6.10422 6.19253 6.21136 6.29213 6.38684 6.45165 6.62928 6.75926 6.81082 7.05095 7.24524 7.68468 7.87778 8.40472 9.51863 10.08748 10.43844 11.44213 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.003721 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.269495 B = 7523.083935 C = 9257.254599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.089 0.911 13 C -0.111 4.111 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.153 3.847 18 H 0.092 0.908 19 N -0.696 5.696 20 C 0.565 3.435 21 O -0.516 6.516 22 C -0.154 4.154 23 C 0.118 3.882 24 F -0.104 7.104 25 C 0.068 3.932 26 N -0.418 5.418 27 C 0.065 3.935 28 C 0.112 3.888 29 F -0.110 7.110 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.016 0.984 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.404 0.596 43 H 0.184 0.816 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.626 -19.346 -8.328 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.086 0.914 9 N -0.374 5.374 10 C 0.032 3.968 11 C -0.121 4.121 12 H 0.107 0.893 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.049 3.951 18 H 0.110 0.890 19 N -0.347 5.347 20 C 0.348 3.652 21 O -0.392 6.392 22 C -0.167 4.167 23 C 0.095 3.905 24 F -0.082 7.082 25 C -0.091 4.091 26 N -0.125 5.125 27 C -0.093 4.093 28 C 0.090 3.910 29 F -0.089 7.089 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.240 0.760 43 H 0.201 0.799 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.424 -19.696 -8.208 22.592 hybrid contribution -0.609 1.327 0.513 1.547 sum 6.814 -18.369 -7.695 21.049 Atomic orbital electron populations 1.69640 1.05083 1.25769 1.57757 1.24717 0.95501 0.97623 1.02976 0.86281 0.78549 0.83572 0.77879 1.21296 1.21670 1.21254 1.19174 0.90984 0.84182 1.42761 0.91352 1.42341 1.05793 0.99834 1.89480 1.20642 0.92939 0.85382 0.97846 1.21649 0.97875 0.93113 0.99470 0.89253 1.21540 0.97676 0.99190 0.96441 1.21592 0.98051 0.94379 1.01816 1.21496 0.98681 0.97662 0.97529 1.21920 0.97890 0.98305 0.98591 1.21122 0.89620 0.95098 0.89234 0.89019 1.46088 1.22971 1.47965 1.17665 1.17592 0.81060 0.80158 0.86404 1.90842 1.74132 1.46321 1.27880 1.20701 0.99460 0.97880 0.98627 1.18667 0.94941 0.86664 0.90218 1.91666 1.93779 1.56348 1.66427 1.23072 0.99416 0.97120 0.89456 1.67654 1.17494 1.01870 1.25519 1.23017 0.90280 0.99466 0.96563 1.18610 0.88139 0.88892 0.95385 1.91607 1.55947 1.65860 1.95450 0.93473 0.78186 0.96346 0.96582 0.92873 0.90057 0.91747 0.92164 0.92254 0.92414 0.91663 0.90612 0.75956 0.79862 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.95 5.33 -59.91 -0.32 -18.27 16 10 C 0.16 3.12 5.42 -4.04 -0.02 3.10 16 11 C -0.10 -1.54 2.02 -90.62 -0.18 -1.72 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.11 -1.55 4.90 -26.73 -0.13 -1.68 16 14 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 15 C -0.12 -1.24 5.77 -26.73 -0.15 -1.40 16 16 C -0.13 -1.51 5.61 -26.71 -0.15 -1.66 16 17 C 0.15 2.07 2.23 -67.91 -0.15 1.92 16 18 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 19 N -0.70 -9.00 3.62 -54.72 -0.20 -9.20 16 20 C 0.57 7.95 6.70 -12.33 -0.08 7.87 16 21 O -0.52 -8.90 16.77 5.32 0.09 -8.82 16 22 C -0.15 -1.79 5.68 -104.55 -0.59 -2.38 16 23 C 0.12 1.27 7.34 -38.81 -0.28 0.99 16 24 F -0.10 -1.33 16.92 2.25 0.04 -1.29 16 25 C 0.07 0.58 11.16 -17.51 -0.20 0.38 16 26 N -0.42 -3.63 10.33 -13.18 -0.14 -3.77 16 27 C 0.07 0.50 11.16 -17.51 -0.20 0.31 16 28 C 0.11 1.09 7.34 -38.80 -0.28 0.80 16 29 F -0.11 -1.13 16.91 2.25 0.04 -1.09 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.32 7.61 -51.93 -0.40 -0.08 16 34 H 0.05 0.71 6.50 -51.93 -0.34 0.37 16 35 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.62 7.61 -51.93 -0.39 0.23 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.40 4.82 6.65 -40.82 -0.27 4.54 16 43 H 0.18 1.05 8.06 -52.48 -0.42 0.62 16 44 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -32.43 369.77 -7.84 -40.27 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.80 Total: 8.67 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.83 Total: -2.28 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.07 Total: -58.34 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.08 Total: -2.38 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.43 -7.84 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722941879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.968 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds