Wall clock time and date at job start Tue Mar 31 2020 23:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48500 * 109.46737 * 239.99902 * 3 2 1 5 5 H 1.48495 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47262 * 119.99974 * 3 2 1 7 7 C 1.38820 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99537 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99364 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46866 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 304.99717 * 11 10 9 13 13 C 1.53002 * 109.47415 * 65.00069 * 11 10 9 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47232 * 184.99942 * 11 10 9 18 18 H 1.09001 * 109.47289 * 60.00075 * 17 11 10 19 19 N 1.46496 * 109.47294 * 299.99951 * 17 11 10 20 20 C 1.34774 * 120.00256 * 154.99900 * 19 17 11 21 21 O 1.21551 * 120.00341 * 0.02562 * 20 19 17 22 22 C 1.47856 * 120.00135 * 180.02562 * 20 19 17 23 23 C 1.40113 * 120.96180 * 89.71475 * 22 20 19 24 24 F 1.35101 * 120.52312 * 0.02562 * 23 22 20 25 25 C 1.38431 * 118.95827 * 179.77815 * 23 22 20 26 26 N 1.31768 * 120.93110 * 0.50983 * 25 23 22 27 27 C 1.31767 * 122.13968 * 359.74298 * 26 25 23 28 28 C 1.38435 * 120.93094 * 359.97438 * 27 26 25 29 29 F 1.35096 * 120.52063 * 179.97438 * 28 27 26 30 30 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00618 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47101 * 60.00120 * 10 9 7 33 33 H 1.09001 * 109.47363 * 299.99361 * 10 9 7 34 34 H 1.08992 * 109.47063 * 59.99950 * 13 11 10 35 35 H 1.09004 * 109.46733 * 299.99664 * 13 11 10 36 36 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 37 37 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 40 40 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 41 41 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 42 42 H 0.97001 * 119.99753 * 334.99414 * 19 17 11 43 43 H 1.08004 * 119.53531 * 180.25337 * 25 23 22 44 44 H 1.08000 * 119.53792 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3793 -4.7131 0.8415 13 6 0.2695 -4.8109 -1.3078 14 6 -0.7252 -5.9735 -1.3081 15 6 0.0350 -7.2952 -1.1821 16 6 0.8294 -7.3041 0.1255 17 6 1.8245 -6.1412 0.1256 18 1 2.3903 -6.1475 1.0572 19 7 2.7444 -6.2846 -1.0055 20 6 3.8437 -7.0552 -0.8865 21 8 4.0717 -7.6316 0.1590 22 6 4.7724 -7.1996 -2.0279 23 6 5.8460 -6.3159 -2.1999 24 9 6.0546 -5.3106 -1.3218 25 6 6.6927 -6.4921 -3.2808 26 7 6.4939 -7.4667 -4.1450 27 6 5.4945 -8.3171 -4.0249 28 6 4.6009 -8.2208 -2.9720 29 9 3.5789 -9.0969 -2.8571 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6846 -3.7146 -0.8895 34 1 0.9539 -4.9176 -2.1493 35 1 -0.2726 -3.8695 -1.3973 36 1 -1.4097 -5.8664 -0.4665 37 1 -1.2908 -5.9675 -2.2399 38 1 -0.6734 -8.1235 -1.1828 39 1 0.7195 -7.4023 -2.0237 40 1 1.3714 -8.2455 0.2150 41 1 0.1450 -7.1969 0.9670 42 1 2.5622 -5.8250 -1.8400 43 1 7.5257 -5.8189 -3.4200 44 1 5.3712 -9.1007 -4.7578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722941879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:15 Heat of formation + Delta-G solvation = -108.703218 kcal Electronic energy + Delta-G solvation = -30302.495078 eV Core-core repulsion = 25889.784052 eV Total energy + Delta-G solvation = -4412.711026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.37665 -50.34285 -41.82733 -40.91306 -39.40132 -36.50173 -35.00595 -33.84266 -33.69612 -31.96384 -31.28931 -30.85414 -27.15811 -26.34258 -24.80456 -24.72136 -23.55694 -22.63842 -21.98595 -20.20716 -19.84711 -19.39049 -19.34493 -19.02849 -17.69489 -17.19003 -17.12506 -16.86907 -16.70856 -16.66028 -16.31099 -16.01815 -15.68859 -15.36953 -15.12505 -15.01936 -14.88066 -14.86634 -14.65754 -14.38763 -14.13240 -13.51032 -13.36492 -13.19403 -13.02831 -12.93062 -12.73666 -12.64306 -12.17816 -11.98262 -11.87339 -11.81702 -11.46686 -11.27909 -11.19572 -11.06155 -10.98197 -10.89227 -10.24731 -10.18033 -9.01559 -7.96727 -5.25308 -0.70459 -0.52866 1.06458 1.46048 1.48459 1.54768 1.75050 2.13359 2.32598 2.54234 2.73421 3.08857 3.19659 3.36395 3.42688 3.51630 3.70019 3.72200 3.77278 4.03760 4.16800 4.17561 4.23953 4.35843 4.42348 4.43596 4.51649 4.57803 4.58971 4.66543 4.84109 4.95434 5.01683 5.10043 5.20725 5.21920 5.23443 5.25797 5.35358 5.44526 5.47868 5.52221 6.15058 6.25528 6.36712 6.79022 7.32654 8.06655 8.32229 9.26168 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.003721 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.269495 B = 7523.083935 C = 9257.254599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.088 4.088 12 H 0.085 0.915 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.122 4.122 17 C 0.159 3.841 18 H 0.073 0.927 19 N -0.690 5.690 20 C 0.565 3.435 21 O -0.555 6.555 22 C -0.169 4.169 23 C 0.097 3.903 24 F -0.123 7.123 25 C 0.084 3.916 26 N -0.424 5.424 27 C 0.087 3.913 28 C 0.108 3.892 29 F -0.114 7.114 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.004 0.996 33 H 0.019 0.981 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.410 0.590 43 H 0.212 0.788 44 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.270 -20.576 -10.156 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.103 0.897 13 C -0.143 4.143 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.160 4.160 17 C 0.054 3.946 18 H 0.091 0.909 19 N -0.340 5.340 20 C 0.349 3.651 21 O -0.434 6.434 22 C -0.182 4.182 23 C 0.075 3.925 24 F -0.101 7.101 25 C -0.074 4.074 26 N -0.131 5.131 27 C -0.071 4.071 28 C 0.085 3.915 29 F -0.092 7.092 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.022 0.978 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.247 0.753 43 H 0.228 0.772 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 8.088 -20.942 -10.056 24.599 hybrid contribution -0.759 1.655 1.060 2.107 sum 7.328 -19.287 -8.996 22.509 Atomic orbital electron populations 1.69787 1.06428 1.26197 1.59150 1.25490 0.96363 1.00812 1.03430 0.85274 0.77321 0.79418 0.78132 1.20335 1.21859 1.20722 1.19526 0.91268 0.85529 1.41780 0.91335 1.42484 1.05626 1.00753 1.89314 1.20725 0.93600 0.85203 0.96975 1.21474 0.96931 0.92082 1.00236 0.89693 1.21462 0.97997 0.99105 0.95742 1.21535 0.97399 0.93454 1.02688 1.21456 0.98791 0.97707 0.96675 1.21871 0.97490 0.96792 0.99894 1.20989 0.89814 0.94983 0.88776 0.90929 1.46054 1.22759 1.47631 1.17599 1.17951 0.81159 0.79373 0.86642 1.90813 1.75027 1.47917 1.29603 1.20648 0.99566 0.99394 0.98566 1.18892 0.95764 0.86788 0.91100 1.91616 1.93993 1.57213 1.67269 1.23473 0.99030 0.96914 0.87943 1.67807 1.17781 1.02094 1.25376 1.23588 0.88529 0.99191 0.95822 1.18716 0.88673 0.88466 0.95631 1.91597 1.56225 1.65884 1.95518 0.93895 0.78999 0.97817 0.96318 0.92157 0.92945 0.91579 0.90760 0.90268 0.92203 0.92133 0.89654 0.75270 0.77186 0.76421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.37 13.06 21.65 0.28 -58.09 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.97 46.11 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.25 -14.02 9.99 84.04 0.84 -13.18 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -37.21 5.33 -343.45 -1.83 -39.04 16 10 C 0.16 6.49 5.42 86.38 0.47 6.96 16 11 C -0.09 -2.70 2.02 -10.79 -0.02 -2.72 16 12 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 13 C -0.11 -2.92 4.90 30.60 0.15 -2.77 16 14 C -0.11 -2.42 5.92 30.59 0.18 -2.23 16 15 C -0.11 -2.09 5.77 30.59 0.18 -1.91 16 16 C -0.12 -2.74 5.61 30.61 0.17 -2.57 16 17 C 0.16 4.33 2.23 45.01 0.10 4.43 16 18 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 19 N -0.69 -17.90 3.62 -445.33 -1.61 -19.51 16 20 C 0.56 16.08 6.70 86.79 0.58 16.66 16 21 O -0.56 -19.70 16.77 -3.88 -0.06 -19.77 16 22 C -0.17 -3.86 5.68 -19.82 -0.11 -3.97 16 23 C 0.10 2.05 7.34 22.77 0.17 2.21 16 24 F -0.12 -3.19 16.92 44.97 0.76 -2.43 16 25 C 0.08 1.26 11.16 84.75 0.95 2.21 16 26 N -0.42 -6.14 10.33 -195.62 -2.02 -8.16 16 27 C 0.09 1.08 11.16 84.75 0.95 2.03 16 28 C 0.11 1.90 7.34 22.78 0.17 2.07 16 29 F -0.11 -2.14 16.91 44.97 0.76 -1.38 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.38 19.87 6.85 -92.71 -0.64 19.24 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.02 0.75 7.61 -2.39 -0.02 0.73 16 34 H 0.06 1.56 6.50 -2.39 -0.02 1.55 16 35 H 0.05 1.78 7.18 -2.39 -0.02 1.76 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.14 7.61 -2.39 -0.02 1.13 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.41 9.64 6.65 -92.71 -0.62 9.02 16 43 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.22 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -70.87 369.77 3.34 -67.54 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.19 Total: 28.91 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.23 Total: 3.78 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -5.18 Total: -124.79 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 1.52 Total: -3.80 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.87 3.34 -67.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722941879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.168 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds