Wall clock time and date at job start Tue Mar 31 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40443 * 126.82314 * 2 1 4 4 C 1.30709 * 106.79668 * 179.97438 * 3 2 1 5 5 N 1.33251 * 108.94302 * 359.76356 * 4 3 2 6 6 C 1.30829 * 109.82780 * 0.40138 * 5 4 3 7 7 C 1.50702 * 125.96146 * 179.86271 * 6 5 4 8 8 N 1.46892 * 109.47311 * 269.69506 * 7 6 5 9 9 C 1.46907 * 111.00056 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47046 * 179.97438 * 9 8 7 11 11 H 1.09003 * 110.00075 * 295.35440 * 10 9 8 12 12 C 1.54342 * 109.99099 * 174.32013 * 10 9 8 13 13 C 1.55152 * 103.01802 * 218.66707 * 12 10 9 14 14 C 1.54908 * 101.58912 * 35.30387 * 13 12 10 15 15 N 1.47024 * 109.88691 * 56.45344 * 10 9 8 16 16 C 1.34780 * 125.64345 * 298.39361 * 15 10 9 17 17 O 1.21279 * 120.00426 * 359.71764 * 16 15 10 18 18 C 1.50703 * 119.99340 * 179.71126 * 16 15 10 19 19 S 1.81000 * 109.46640 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00077 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99794 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99960 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99524 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99704 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99697 * 24 22 20 28 28 H 1.09004 * 109.47111 * 270.03548 * 1 2 3 29 29 H 1.08996 * 109.47405 * 30.03955 * 1 2 3 30 30 H 1.09004 * 109.46698 * 150.04356 * 1 2 3 31 31 H 1.07994 * 125.53131 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.46914 * 149.69022 * 7 6 5 33 33 H 1.09004 * 109.46836 * 29.69460 * 7 6 5 34 34 H 1.00904 * 110.99892 * 303.95107 * 8 7 6 35 35 H 1.08995 * 109.47073 * 59.99825 * 9 8 7 36 36 H 1.08999 * 109.46645 * 299.99501 * 9 8 7 37 37 H 1.08994 * 110.84929 * 100.19468 * 12 10 9 38 38 H 1.08999 * 110.66323 * 337.04847 * 12 10 9 39 39 H 1.09003 * 111.00209 * 277.22677 * 13 12 10 40 40 H 1.09003 * 111.03554 * 153.40122 * 13 12 10 41 41 H 1.08989 * 110.36917 * 204.15021 * 14 13 12 42 42 H 1.09005 * 110.45526 * 81.87144 * 14 13 12 43 43 H 1.08997 * 109.46997 * 60.00690 * 18 16 15 44 44 H 1.08995 * 109.47631 * 299.99616 * 18 16 15 45 45 H 0.96998 * 119.99330 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5348 0.6766 0.0006 5 7 3.5096 -0.6556 0.0061 6 6 2.2708 -1.0761 0.0005 7 6 1.8247 -2.5156 0.0011 8 7 1.6799 -2.9839 -1.3836 9 6 1.2458 -4.3869 -1.4222 10 6 1.1058 -4.8375 -2.8775 11 1 0.3107 -4.2752 -3.3671 12 6 0.7891 -6.3470 -2.9344 13 6 1.6147 -6.8317 -4.1553 14 6 2.8759 -5.9382 -4.0526 15 7 2.3756 -4.6311 -3.5894 16 6 2.9843 -3.4440 -3.7815 17 8 2.4797 -2.4275 -3.3540 18 6 4.2923 -3.3801 -4.5274 19 16 4.8512 -1.6609 -4.6186 20 6 6.3532 -1.8747 -5.5148 21 1 6.6610 -2.8623 -5.8251 22 6 7.1413 -0.7739 -5.8210 23 7 6.7664 0.4298 -5.4423 24 14 8.7339 -1.0006 -6.7704 25 1 9.8510 -1.2231 -5.8174 26 1 9.0066 0.2158 -7.5774 27 1 8.6105 -2.1748 -7.6711 28 1 -0.3633 0.0006 1.0277 29 1 -0.3634 0.8896 -0.5144 30 1 -0.3633 -0.8904 -0.5132 31 1 4.4255 1.2874 0.0011 32 1 0.8671 -2.5990 0.5150 33 1 2.5673 -3.1258 0.5153 34 1 1.0447 -2.3942 -1.9002 35 1 0.2843 -4.4837 -0.9181 36 1 1.9848 -5.0097 -0.9181 37 1 -0.2755 -6.5141 -3.0977 38 1 1.1206 -6.8442 -2.0228 39 1 1.0797 -6.6468 -5.0869 40 1 1.8738 -7.8861 -4.0588 41 1 3.3507 -5.8385 -5.0286 42 1 3.5788 -6.3530 -3.3301 43 1 4.1552 -3.7719 -5.5353 44 1 5.0388 -3.9771 -4.0038 45 1 5.9395 0.5473 -4.9490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723883615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:31 Heat of formation + Delta-G solvation = 81.456479 kcal Electronic energy + Delta-G solvation = -27873.708721 eV Core-core repulsion = 24055.376775 eV Total energy + Delta-G solvation = -3818.331946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82381 -39.96546 -37.06061 -36.07299 -33.87045 -32.40914 -31.99053 -31.52456 -29.86996 -28.58979 -27.44742 -26.11272 -24.73415 -23.95090 -22.29202 -21.76191 -21.28597 -20.29982 -18.87108 -18.08751 -16.98786 -16.91148 -16.37776 -15.98006 -15.61248 -14.94829 -14.68109 -14.55994 -14.36619 -14.00420 -13.80899 -13.72353 -13.47606 -13.18278 -13.16619 -13.10001 -12.79848 -12.63723 -12.38933 -12.22197 -11.82205 -11.62902 -11.58246 -11.44298 -11.35615 -11.17899 -10.96591 -10.83266 -10.12587 -9.69336 -9.48469 -9.42906 -9.36373 -9.07068 -8.90032 -8.57104 -8.05766 -7.94719 -6.51170 -6.49190 -3.85631 1.77453 2.45011 2.98523 3.22541 3.34735 3.40509 3.45611 3.59374 3.67296 4.05462 4.29206 4.33819 4.37564 4.46726 4.57900 4.64587 4.83621 4.94816 4.95930 5.11050 5.16154 5.17853 5.20924 5.24306 5.31383 5.33443 5.40798 5.46232 5.48906 5.61612 5.62556 5.66197 5.69104 5.86056 6.00123 6.02764 6.19587 6.51038 6.54877 6.69926 6.86514 7.03421 7.44150 7.88449 8.03409 8.39904 8.61523 8.85751 9.39170 10.92962 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.004622 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.409769 B = 6057.091401 C = 9116.540433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.385 5.385 3 N -0.326 5.326 4 C 0.208 3.792 5 N -0.514 5.514 6 C 0.289 3.711 7 C 0.139 3.861 8 N -0.645 5.645 9 C 0.051 3.949 10 C 0.142 3.858 11 H 0.068 0.932 12 C -0.125 4.125 13 C -0.132 4.132 14 C 0.100 3.900 15 N -0.618 5.618 16 C 0.550 3.450 17 O -0.477 6.477 18 C -0.121 4.121 19 S -0.109 6.109 20 C -0.606 4.606 21 H 0.063 0.937 22 C 0.035 3.965 23 N -0.886 5.886 24 Si 1.085 2.915 25 H -0.284 1.284 26 H -0.281 1.281 27 H -0.288 1.288 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.216 0.784 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.353 0.647 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 -14.236 10.080 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.177 5.177 3 N -0.154 5.154 4 C -0.095 4.095 5 N -0.241 5.241 6 C 0.012 3.988 7 C 0.007 3.993 8 N -0.282 5.282 9 C -0.079 4.079 10 C 0.038 3.962 11 H 0.086 0.914 12 C -0.163 4.163 13 C -0.170 4.170 14 C -0.023 4.023 15 N -0.357 5.357 16 C 0.338 3.662 17 O -0.347 6.347 18 C -0.272 4.272 19 S 0.118 5.882 20 C -0.754 4.754 21 H 0.081 0.919 22 C -0.175 4.175 23 N -0.521 5.521 24 Si 0.912 3.088 25 H -0.211 1.211 26 H -0.206 1.206 27 H -0.214 1.214 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.232 0.768 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.176 0.824 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.518 -11.341 10.000 21.667 hybrid contribution -1.569 -2.221 0.241 2.730 sum -17.087 -13.563 10.242 24.100 Atomic orbital electron populations 1.21808 0.74786 1.04559 1.03072 1.50191 1.07463 1.04288 1.55781 1.77989 1.02326 1.07872 1.27186 1.25956 0.95580 0.90549 0.97373 1.70487 1.19287 1.11225 1.23072 1.24007 0.86363 0.91824 0.96601 1.20327 0.99691 0.86677 0.92605 1.60862 1.56023 1.02160 1.09174 1.22461 0.98383 0.90627 0.96410 1.21464 0.87492 0.95609 0.91682 0.91352 1.22634 1.00725 0.93794 0.99195 1.22758 0.96160 0.99535 0.98522 1.22240 0.96314 0.83667 1.00097 1.48406 1.23210 1.06313 1.57753 1.19652 0.85449 0.81705 0.79402 1.90580 1.64842 1.32874 1.46440 1.23248 0.96596 1.05703 1.01642 1.84819 1.27593 1.01481 1.74333 1.23749 1.08943 0.98644 1.44103 0.91897 1.25986 1.02980 0.91607 0.96951 1.70754 1.24479 1.22496 1.34351 0.83320 0.74008 0.75593 0.75907 1.21102 1.20619 1.21405 0.90665 0.88981 0.89908 0.76752 0.94121 0.88028 0.82374 0.94956 0.90642 0.90254 0.90432 0.90647 0.89983 0.90663 0.91715 0.89973 0.89706 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 11.16 59.85 0.67 1.61 16 2 N -0.39 -5.75 4.04 -65.09 -0.26 -6.02 16 3 N -0.33 -5.72 12.70 29.29 0.37 -5.34 16 4 C 0.21 3.75 13.03 -91.81 -1.20 2.55 16 5 N -0.51 -9.88 11.19 -11.97 -0.13 -10.02 16 6 C 0.29 4.64 7.50 -155.70 -1.17 3.47 16 7 C 0.14 1.71 5.80 -4.98 -0.03 1.68 16 8 N -0.65 -8.77 3.31 -115.06 -0.38 -9.15 16 9 C 0.05 0.52 5.28 -3.82 -0.02 0.50 16 10 C 0.14 1.48 3.28 -66.94 -0.22 1.26 16 11 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 12 C -0.12 -0.86 6.48 -24.89 -0.16 -1.02 16 13 C -0.13 -0.96 7.09 -24.59 -0.17 -1.14 16 14 C 0.10 1.07 6.69 -2.53 -0.02 1.05 16 15 N -0.62 -8.51 3.06 -163.01 -0.50 -9.00 16 16 C 0.55 10.43 7.43 -10.98 -0.08 10.35 16 17 O -0.48 -10.20 12.02 5.56 0.07 -10.13 16 18 C -0.12 -2.60 5.16 36.01 0.19 -2.41 16 19 S -0.11 -3.04 19.60 -107.50 -2.11 -5.15 16 20 C -0.61 -18.12 9.50 30.94 0.29 -17.83 16 21 H 0.06 1.81 7.80 -52.49 -0.41 1.41 16 22 C 0.04 1.05 5.49 -17.43 -0.10 0.96 16 23 N -0.89 -28.43 13.67 55.49 0.76 -27.68 16 24 Si 1.09 25.87 29.92 -169.99 -5.09 20.78 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.61 7.72 -51.93 -0.40 0.21 16 31 H 0.22 3.24 8.06 -52.49 -0.42 2.82 16 32 H 0.04 0.36 7.76 -51.93 -0.40 -0.04 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.35 5.16 7.38 -39.29 -0.29 4.87 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.47 7.79 -51.93 -0.40 0.06 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.83 7.48 -51.94 -0.39 0.44 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.67 7.85 -51.92 -0.41 1.27 16 44 H 0.08 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.28 9.16 7.12 -40.82 -0.29 8.87 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -39.32 383.14 -10.37 -49.69 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.86 Total: 5.21 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.01 Total: 1.03 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -0.15 Total: -67.21 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.09 Total: 20.78 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.11 Total: -5.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.32 -10.37 -49.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723883615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.147 kcal (2) G-P(sol) polarization free energy of solvation -39.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds