Wall clock time and date at job start Tue Mar 31 2020 23:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52991 * 109.49777 * 59.99872 * 10 9 7 12 12 O 1.42892 * 109.47462 * 304.99794 * 11 10 9 13 13 C 1.53037 * 109.49399 * 299.93378 * 10 9 7 14 14 C 1.53037 * 109.54171 * 301.41499 * 13 10 9 15 15 C 1.53192 * 109.31531 * 298.63627 * 14 13 10 16 16 N 1.46930 * 108.77192 * 54.63430 * 15 14 13 17 17 C 1.34772 * 120.63031 * 126.37637 * 16 15 14 18 18 O 1.21283 * 120.00131 * 179.97438 * 17 16 15 19 19 C 1.50697 * 120.00153 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.47313 * 180.02562 * 19 17 16 21 21 H 1.08999 * 110.54365 * 303.60841 * 20 19 17 22 22 C 1.54227 * 110.60899 * 180.59111 * 20 19 17 23 23 C 1.51319 * 103.55766 * 241.48641 * 22 20 19 24 24 O 1.21227 * 125.39746 * 179.97438 * 23 22 20 25 25 N 1.33874 * 109.20287 * 359.97438 * 23 22 20 26 26 C 1.33880 * 114.48232 * 0.02562 * 25 23 22 27 27 O 1.21221 * 125.40169 * 180.02562 * 26 25 23 28 28 C 1.47000 * 118.75391 * 306.38919 * 16 15 14 29 29 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 31 31 H 1.08995 * 109.47303 * 65.00359 * 11 10 9 32 32 H 1.09004 * 109.47307 * 184.99766 * 11 10 9 33 33 H 0.96703 * 114.00134 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.46319 * 61.43994 * 13 10 9 35 35 H 1.09001 * 109.46191 * 181.40951 * 13 10 9 36 36 H 1.08999 * 109.49793 * 58.58508 * 14 13 10 37 37 H 1.09002 * 109.50167 * 178.68496 * 14 13 10 38 38 H 1.08995 * 109.59176 * 174.41897 * 15 14 13 39 39 H 1.08998 * 109.58469 * 294.70969 * 15 14 13 40 40 H 1.08998 * 109.47349 * 300.00754 * 19 17 16 41 41 H 1.09003 * 109.47100 * 60.00768 * 19 17 16 42 42 H 1.09003 * 110.60185 * 0.02562 * 22 20 19 43 43 H 1.09003 * 110.60962 * 122.96459 * 22 20 19 44 44 H 0.97003 * 122.75953 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.58306 * 293.83550 * 28 16 15 46 46 H 1.08996 * 109.62821 * 173.38314 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 6 2.9380 -3.7317 1.2629 12 8 3.7870 -2.5837 1.3173 13 6 2.9371 -3.7456 -1.2362 14 6 2.0614 -3.6369 -2.4866 15 6 1.0665 -4.8015 -2.5113 16 7 0.3163 -4.8094 -1.2480 17 6 -1.0314 -4.8054 -1.2497 18 8 -1.6392 -4.8125 -0.2002 19 6 -1.7832 -4.7920 -2.5557 20 6 -3.2878 -4.7892 -2.2780 21 1 -3.5644 -5.6434 -1.6601 22 6 -4.0836 -4.7904 -3.5991 23 6 -4.8662 -3.4965 -3.5430 24 8 -5.6303 -3.1004 -4.3968 25 7 -4.5810 -2.8585 -2.4012 26 6 -3.7047 -3.4949 -1.6141 27 8 -3.3085 -3.0976 -0.5395 28 6 1.0633 -4.8216 0.0180 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0068 31 1 2.3065 -3.7590 2.1509 32 1 3.5487 -4.6338 1.2237 33 1 4.3743 -2.5648 2.0854 34 1 3.6623 -2.9319 -1.2288 35 1 3.4628 -4.7005 -1.2433 36 1 1.5163 -2.6932 -2.4680 37 1 2.6904 -3.6768 -3.3759 38 1 0.3763 -4.6749 -3.3453 39 1 1.6070 -5.7414 -2.6236 40 1 -1.5164 -3.8981 -3.1194 41 1 -1.5220 -5.6780 -3.1344 42 1 -3.4076 -4.7935 -4.4542 43 1 -4.7585 -5.6455 -3.6397 44 1 -4.9767 -2.0053 -2.1636 45 1 1.6037 -5.7633 0.1142 46 1 0.3714 -4.7080 0.8525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724911790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:26 Heat of formation + Delta-G solvation = -122.382330 kcal Electronic energy + Delta-G solvation = -31799.495831 eV Core-core repulsion = 27497.279149 eV Total energy + Delta-G solvation = -4302.216682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80200 -39.93320 -38.51490 -37.71835 -35.78878 -35.70785 -33.84345 -33.51702 -31.96941 -31.28490 -29.21884 -28.35949 -25.69656 -25.34717 -24.31276 -23.39373 -21.80473 -21.73949 -20.87734 -19.14216 -18.28450 -17.82900 -17.28950 -16.87137 -16.67493 -16.27899 -16.09251 -15.42679 -15.28742 -14.90583 -14.49664 -14.15661 -14.08592 -13.91943 -13.79909 -13.65640 -13.38839 -13.13288 -13.01715 -12.89436 -12.47605 -12.27575 -12.08378 -11.90395 -11.74843 -11.45994 -11.15082 -10.77209 -10.68635 -10.65847 -10.36291 -10.33548 -10.17466 -10.05944 -9.85899 -9.79891 -9.45613 -9.36193 -8.93519 -8.70558 -8.17780 -6.78835 -5.52675 -2.80693 1.57269 2.77689 2.83908 2.98174 3.27037 3.53608 3.60265 3.62667 3.97619 4.13293 4.25981 4.52475 4.73106 4.80564 4.93812 5.00479 5.13198 5.17677 5.30137 5.36574 5.40103 5.44545 5.55354 5.66610 5.70152 5.76945 5.83780 5.91327 5.96054 6.04229 6.07638 6.15140 6.16474 6.38241 6.54714 6.70555 6.77319 6.89023 6.99021 7.10540 7.35919 7.75139 8.00037 8.15717 8.39474 8.55593 8.64038 9.75913 10.28287 10.64768 11.68933 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.004341 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.569484 B = 6448.913652 C = 7810.422702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.025 4.025 3 Si 0.899 3.101 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.204 4.204 8 H 0.092 0.908 9 N -0.703 5.703 10 C 0.188 3.812 11 C 0.073 3.927 12 O -0.535 6.535 13 C -0.116 4.116 14 C -0.130 4.130 15 C 0.111 3.889 16 N -0.600 5.600 17 C 0.509 3.491 18 O -0.512 6.512 19 C -0.126 4.126 20 C -0.107 4.107 21 H 0.129 0.871 22 C -0.155 4.155 23 C 0.531 3.469 24 O -0.497 6.497 25 N -0.684 5.684 26 C 0.514 3.486 27 O -0.417 6.417 28 C 0.118 3.882 29 H 0.248 0.752 30 H 0.385 0.615 31 H 0.036 0.964 32 H 0.023 0.977 33 H 0.350 0.650 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.415 0.585 45 H 0.063 0.937 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -16.376 -7.845 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.219 4.219 3 Si 0.732 3.268 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.225 1.225 7 C -0.336 4.336 8 H 0.109 0.891 9 N -0.344 5.344 10 C 0.095 3.905 11 C -0.008 4.008 12 O -0.337 6.337 13 C -0.156 4.156 14 C -0.168 4.168 15 C -0.012 4.012 16 N -0.333 5.333 17 C 0.296 3.704 18 O -0.387 6.387 19 C -0.167 4.167 20 C -0.129 4.129 21 H 0.147 0.853 22 C -0.194 4.194 23 C 0.319 3.681 24 O -0.371 6.371 25 N -0.350 5.350 26 C 0.298 3.702 27 O -0.281 6.281 28 C -0.005 4.005 29 H 0.058 0.942 30 H 0.220 0.780 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.195 0.805 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.254 0.746 45 H 0.081 0.919 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.351 -15.823 -7.696 17.752 hybrid contribution 0.401 1.410 0.640 1.600 sum -1.949 -14.413 -7.057 16.165 Atomic orbital electron populations 1.69723 1.04835 1.24739 1.59147 1.24757 0.95335 0.97360 1.04488 0.86206 0.78888 0.84981 0.76720 1.20691 1.22625 1.22496 1.19578 0.91806 0.83104 1.39079 0.89057 1.42428 1.05491 0.99073 1.87392 1.19950 0.90450 0.87893 0.92250 1.22728 0.92083 0.86671 0.99294 1.86934 1.54663 1.43941 1.48156 1.21865 0.98333 1.00198 0.95233 1.21817 0.97673 0.99587 0.97730 1.21737 0.95040 0.99002 0.85422 1.47811 1.05036 1.73357 1.07142 1.20239 0.82125 0.77027 0.91009 1.90797 1.66959 1.47983 1.32956 1.21620 0.92027 1.05345 0.97681 1.21812 0.95899 0.98816 0.96416 0.85317 1.22579 1.00281 0.97162 0.99424 1.20705 0.80668 0.86538 0.80196 1.90795 1.35080 1.71022 1.40165 1.44871 1.43468 1.25147 1.21530 1.20646 0.78155 0.86488 0.84881 1.91017 1.50811 1.68290 1.17947 1.21670 0.94757 0.97185 0.86907 0.94189 0.77995 0.94617 0.95936 0.80527 0.90844 0.94109 0.89347 0.92302 0.90642 0.92048 0.88191 0.87419 0.86054 0.86057 0.74594 0.91893 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.29 13.06 55.49 0.72 -28.56 16 2 C -0.03 -0.74 5.50 -17.43 -0.10 -0.83 16 3 Si 0.90 23.36 29.55 -169.99 -5.02 18.34 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 7 C -0.20 -5.59 8.14 -15.06 -0.12 -5.71 16 8 H 0.09 2.50 5.29 -52.49 -0.28 2.23 16 9 N -0.70 -17.24 4.22 -47.12 -0.20 -17.44 16 10 C 0.19 3.54 0.68 -131.70 -0.09 3.45 16 11 C 0.07 1.29 6.09 37.15 0.23 1.52 16 12 O -0.53 -10.22 9.91 -35.23 -0.35 -10.57 16 13 C -0.12 -1.96 4.43 -26.69 -0.12 -2.08 16 14 C -0.13 -1.99 5.93 -26.61 -0.16 -2.15 16 15 C 0.11 1.34 6.34 -3.71 -0.02 1.32 16 16 N -0.60 -9.06 2.87 -172.71 -0.50 -9.55 16 17 C 0.51 8.00 7.37 -10.99 -0.08 7.92 16 18 O -0.51 -10.10 12.98 -17.45 -0.23 -10.32 16 19 C -0.13 -1.32 3.38 -27.88 -0.09 -1.42 16 20 C -0.11 -1.08 2.72 -90.83 -0.25 -1.33 16 21 H 0.13 1.19 8.03 -51.93 -0.42 0.77 16 22 C -0.15 -1.09 6.67 -26.94 -0.18 -1.27 16 23 C 0.53 5.89 8.55 -11.08 -0.09 5.79 16 24 O -0.50 -7.03 18.02 5.60 0.10 -6.93 16 25 N -0.68 -8.41 5.48 -11.39 -0.06 -8.48 16 26 C 0.51 7.55 7.71 -11.08 -0.09 7.47 16 27 O -0.42 -8.61 15.42 -17.40 -0.27 -8.87 16 28 C 0.12 1.95 5.15 -3.67 -0.02 1.93 16 29 H 0.25 7.67 8.31 -40.82 -0.34 7.34 16 30 H 0.39 10.76 7.65 -40.82 -0.31 10.44 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 4.99 9.12 45.56 0.42 5.40 16 34 H 0.07 1.44 6.97 -51.93 -0.36 1.08 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 1.08 7.69 -51.93 -0.40 0.68 16 41 H 0.11 0.68 7.94 -51.93 -0.41 0.27 16 42 H 0.12 0.61 7.74 -51.93 -0.40 0.21 16 43 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.41 4.91 8.96 -40.82 -0.37 4.55 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.80 7.01 -51.93 -0.36 1.43 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -39.16 366.67 -7.15 -46.30 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -5.69 Total: 15.95 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -1.18 Total: 14.61 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.03 Total: -64.03 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.74 Total: -36.69 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.16 -7.15 -46.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724911790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.080 kcal (2) G-P(sol) polarization free energy of solvation -39.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds