Wall clock time and date at job start Tue Mar 31 2020 23:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52991 * 109.49777 * 59.99872 * 10 9 7 12 12 O 1.42892 * 109.47462 * 304.99794 * 11 10 9 13 13 C 1.53037 * 109.49399 * 299.93378 * 10 9 7 14 14 C 1.53037 * 109.54171 * 301.41499 * 13 10 9 15 15 C 1.53192 * 109.31531 * 298.63627 * 14 13 10 16 16 N 1.46930 * 108.77192 * 54.63430 * 15 14 13 17 17 C 1.34772 * 120.63031 * 126.37637 * 16 15 14 18 18 O 1.21283 * 120.00131 * 179.97438 * 17 16 15 19 19 C 1.50697 * 120.00153 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.47313 * 180.02562 * 19 17 16 21 21 H 1.08999 * 110.54365 * 303.60841 * 20 19 17 22 22 C 1.54227 * 110.60899 * 180.59111 * 20 19 17 23 23 C 1.51319 * 103.55766 * 241.48641 * 22 20 19 24 24 O 1.21227 * 125.39746 * 179.97438 * 23 22 20 25 25 N 1.33874 * 109.20287 * 359.97438 * 23 22 20 26 26 C 1.33880 * 114.48232 * 0.02562 * 25 23 22 27 27 O 1.21221 * 125.40169 * 180.02562 * 26 25 23 28 28 C 1.47000 * 118.75391 * 306.38919 * 16 15 14 29 29 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 31 31 H 1.08995 * 109.47303 * 65.00359 * 11 10 9 32 32 H 1.09004 * 109.47307 * 184.99766 * 11 10 9 33 33 H 0.96703 * 114.00134 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.46319 * 61.43994 * 13 10 9 35 35 H 1.09001 * 109.46191 * 181.40951 * 13 10 9 36 36 H 1.08999 * 109.49793 * 58.58508 * 14 13 10 37 37 H 1.09002 * 109.50167 * 178.68496 * 14 13 10 38 38 H 1.08995 * 109.59176 * 174.41897 * 15 14 13 39 39 H 1.08998 * 109.58469 * 294.70969 * 15 14 13 40 40 H 1.08998 * 109.47349 * 300.00754 * 19 17 16 41 41 H 1.09003 * 109.47100 * 60.00768 * 19 17 16 42 42 H 1.09003 * 110.60185 * 0.02562 * 22 20 19 43 43 H 1.09003 * 110.60962 * 122.96459 * 22 20 19 44 44 H 0.97003 * 122.75953 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.58306 * 293.83550 * 28 16 15 46 46 H 1.08996 * 109.62821 * 173.38314 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 6 2.9380 -3.7317 1.2629 12 8 3.7870 -2.5837 1.3173 13 6 2.9371 -3.7456 -1.2362 14 6 2.0614 -3.6369 -2.4866 15 6 1.0665 -4.8015 -2.5113 16 7 0.3163 -4.8094 -1.2480 17 6 -1.0314 -4.8054 -1.2497 18 8 -1.6392 -4.8125 -0.2002 19 6 -1.7832 -4.7920 -2.5557 20 6 -3.2878 -4.7892 -2.2780 21 1 -3.5644 -5.6434 -1.6601 22 6 -4.0836 -4.7904 -3.5991 23 6 -4.8662 -3.4965 -3.5430 24 8 -5.6303 -3.1004 -4.3968 25 7 -4.5810 -2.8585 -2.4012 26 6 -3.7047 -3.4949 -1.6141 27 8 -3.3085 -3.0976 -0.5395 28 6 1.0633 -4.8216 0.0180 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0068 31 1 2.3065 -3.7590 2.1509 32 1 3.5487 -4.6338 1.2237 33 1 4.3743 -2.5648 2.0854 34 1 3.6623 -2.9319 -1.2288 35 1 3.4628 -4.7005 -1.2433 36 1 1.5163 -2.6932 -2.4680 37 1 2.6904 -3.6768 -3.3759 38 1 0.3763 -4.6749 -3.3453 39 1 1.6070 -5.7414 -2.6236 40 1 -1.5164 -3.8981 -3.1194 41 1 -1.5220 -5.6780 -3.1344 42 1 -3.4076 -4.7935 -4.4542 43 1 -4.7585 -5.6455 -3.6397 44 1 -4.9767 -2.0053 -2.1636 45 1 1.6037 -5.7633 0.1142 46 1 0.3714 -4.7080 0.8525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724911790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:25 Heat of formation + Delta-G solvation = -156.352813 kcal Electronic energy + Delta-G solvation = -31800.968902 eV Core-core repulsion = 27497.279149 eV Total energy + Delta-G solvation = -4303.689752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.78357 -41.13980 -39.67632 -39.06870 -37.06958 -36.89649 -35.49344 -34.53339 -33.65419 -32.59417 -30.73244 -29.59235 -26.84856 -26.52654 -25.70986 -25.22030 -22.99755 -22.64201 -21.89687 -20.40247 -19.57880 -19.15215 -18.87149 -17.94282 -17.87470 -17.70364 -17.16671 -16.68579 -16.42483 -16.39355 -15.80379 -15.67318 -15.34718 -15.28635 -15.03837 -14.80095 -14.73728 -14.65793 -14.17274 -13.86213 -13.63830 -13.42447 -13.38640 -13.22346 -12.93470 -12.86509 -12.65087 -12.57203 -12.15919 -11.94411 -11.71452 -11.66907 -11.62229 -11.45156 -11.31654 -11.23889 -10.95057 -10.77711 -10.54017 -10.50275 -9.36584 -8.84287 -7.75507 -5.00981 0.57709 1.43023 1.44741 1.54673 1.80492 1.83008 1.91640 2.22171 2.64565 3.19895 3.27386 3.44089 3.45285 3.71853 3.76198 3.79271 3.97777 4.08802 4.23083 4.32406 4.35393 4.47208 4.54148 4.58486 4.61910 4.63284 4.70907 4.75857 4.85608 4.87368 4.96642 4.98596 5.05685 5.08224 5.08684 5.37024 5.61876 5.70168 5.74732 5.76966 5.93082 6.40742 6.44654 6.65050 6.94793 7.14732 7.43961 7.51384 8.25204 8.47452 9.47629 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.004341 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.569484 B = 6448.913652 C = 7810.422702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.101 4.101 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.304 1.304 6 H -0.309 1.309 7 C -0.169 4.169 8 H 0.095 0.905 9 N -0.714 5.714 10 C 0.173 3.827 11 C 0.073 3.927 12 O -0.565 6.565 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.112 3.888 16 N -0.604 5.604 17 C 0.493 3.507 18 O -0.563 6.563 19 C -0.120 4.120 20 C -0.098 4.098 21 H 0.142 0.858 22 C -0.130 4.130 23 C 0.530 3.470 24 O -0.529 6.529 25 N -0.688 5.688 26 C 0.507 3.493 27 O -0.493 6.493 28 C 0.123 3.877 29 H 0.235 0.765 30 H 0.363 0.637 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.373 0.627 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.409 0.591 45 H 0.104 0.896 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -20.325 -10.713 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.290 4.290 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.232 1.232 6 H -0.238 1.238 7 C -0.301 4.301 8 H 0.113 0.887 9 N -0.352 5.352 10 C 0.082 3.918 11 C -0.007 4.007 12 O -0.370 6.370 13 C -0.148 4.148 14 C -0.167 4.167 15 C -0.010 4.010 16 N -0.337 5.337 17 C 0.282 3.718 18 O -0.441 6.441 19 C -0.160 4.160 20 C -0.119 4.119 21 H 0.159 0.841 22 C -0.169 4.169 23 C 0.321 3.679 24 O -0.404 6.404 25 N -0.353 5.353 26 C 0.295 3.705 27 O -0.362 6.362 28 C -0.001 4.001 29 H 0.044 0.956 30 H 0.195 0.805 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.220 0.780 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.186 0.814 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.247 0.753 45 H 0.122 0.878 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.332 -19.840 -10.614 22.503 hybrid contribution -0.118 2.556 1.578 3.007 sum -0.450 -17.284 -9.036 19.508 Atomic orbital electron populations 1.69920 1.06389 1.24208 1.62915 1.25436 0.95986 1.00493 1.07124 0.85248 0.78518 0.81555 0.75711 1.18985 1.23247 1.23755 1.19852 0.91871 0.84054 1.34367 0.88722 1.42595 1.04578 1.00677 1.87310 1.20445 0.91276 0.86199 0.93915 1.22671 0.92289 0.87999 0.97732 1.86802 1.55368 1.45115 1.49721 1.21751 0.97491 1.01041 0.94547 1.21770 0.98182 0.98546 0.98192 1.22008 0.94991 0.99192 0.84801 1.48005 1.05275 1.72841 1.07593 1.21260 0.82399 0.75800 0.92361 1.90786 1.67972 1.50073 1.35313 1.21768 0.91075 1.07978 0.95148 1.21890 0.96344 0.96008 0.97698 0.84060 1.22703 1.00208 0.95481 0.98466 1.21477 0.80149 0.87532 0.78792 1.90788 1.36628 1.72083 1.40888 1.45080 1.42999 1.25124 1.22078 1.21620 0.77080 0.87881 0.83954 1.90987 1.53498 1.70442 1.21282 1.21535 0.93770 0.97748 0.87061 0.95615 0.80542 0.96297 0.91296 0.77979 0.94083 0.89971 0.94895 0.89382 0.87572 0.87814 0.88300 0.81400 0.82444 0.82128 0.75339 0.87765 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.26 13.06 21.65 0.28 -64.98 16 2 C -0.10 -6.17 5.50 84.86 0.47 -5.70 16 3 Si 0.96 50.06 29.55 68.60 2.03 52.09 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 6 H -0.31 -16.56 7.11 99.48 0.71 -15.85 16 7 C -0.17 -9.49 8.14 84.03 0.68 -8.81 16 8 H 0.10 5.23 5.29 -2.91 -0.02 5.22 16 9 N -0.71 -36.11 4.22 -303.00 -1.28 -37.39 16 10 C 0.17 6.34 0.68 3.68 0.00 6.34 16 11 C 0.07 2.48 6.09 71.98 0.44 2.91 16 12 O -0.56 -20.97 9.91 -148.98 -1.48 -22.45 16 13 C -0.11 -3.38 4.43 30.62 0.14 -3.24 16 14 C -0.13 -3.58 5.93 30.67 0.18 -3.40 16 15 C 0.11 2.17 6.34 86.36 0.55 2.72 16 16 N -0.60 -16.89 2.87 -818.73 -2.35 -19.24 16 17 C 0.49 14.92 7.37 87.66 0.65 15.57 16 18 O -0.56 -22.98 12.98 18.96 0.25 -22.73 16 19 C -0.12 -2.09 3.38 29.85 0.10 -1.99 16 20 C -0.10 -1.72 2.72 -10.93 -0.03 -1.75 16 21 H 0.14 2.23 8.03 -2.39 -0.02 2.21 16 22 C -0.13 -1.24 6.67 30.46 0.20 -1.04 16 23 C 0.53 10.94 8.55 87.99 0.75 11.69 16 24 O -0.53 -14.36 18.02 -2.87 -0.05 -14.41 16 25 N -0.69 -17.52 5.48 -427.79 -2.34 -19.86 16 26 C 0.51 15.44 7.71 87.99 0.68 16.12 16 27 O -0.49 -22.15 15.42 19.15 0.30 -21.86 16 28 C 0.12 3.89 5.15 86.35 0.44 4.33 16 29 H 0.23 15.57 8.31 -92.71 -0.77 14.79 16 30 H 0.36 21.50 7.65 -92.71 -0.71 20.79 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.37 10.07 9.12 -74.05 -0.68 9.40 16 34 H 0.04 1.53 6.97 -2.39 -0.02 1.52 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.03 1.29 7.53 -2.39 -0.02 1.27 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.11 1.44 5.93 -2.39 -0.01 1.43 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.82 7.69 -2.39 -0.02 1.80 16 41 H 0.17 0.91 7.94 -2.39 -0.02 0.89 16 42 H 0.16 0.53 7.74 -2.39 -0.02 0.51 16 43 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.41 10.66 8.96 -92.71 -0.83 9.83 16 45 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.05 2.20 7.01 -2.39 -0.02 2.18 16 Total: -1.00 -97.80 366.67 -0.55 -98.35 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -1.16 Total: 38.71 kcal Atomic # 6 Polarization: 28.51 SS G_CDS: 5.25 Total: 33.76 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -5.69 Total: -141.47 kcal Atomic # 8 Polarization: -80.45 SS G_CDS: -0.99 Total: -81.44 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.03 Total: 52.09 kcal Total: -97.80 -0.55 -98.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724911790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.006 kcal (2) G-P(sol) polarization free energy of solvation -97.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds