Wall clock time and date at job start Tue Mar 31 2020 22:32:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 N 1.28710 * 125.87288 * 2 1
4 4 N 1.28631 * 110.17893 * 180.24130 * 3 2 1
5 5 C 1.33770 * 108.88864 * 359.75747 * 4 3 2
6 6 C 1.35315 * 125.86329 * 179.82756 * 2 1 3
7 7 C 1.50699 * 126.91283 * 0.03239 * 6 2 1
8 8 N 1.46906 * 109.46990 * 274.71054 * 7 6 2
9 9 C 1.46902 * 110.99573 * 180.02562 * 8 7 6
10 10 C 1.53008 * 109.46622 * 179.97438 * 9 8 7
11 11 C 1.53786 * 113.61376 * 274.13482 * 10 9 8
12 12 C 1.53956 * 87.01734 * 220.04986 * 11 10 9
13 13 N 1.46496 * 113.53559 * 270.81257 * 12 11 10
14 14 C 1.34783 * 119.99940 * 252.49106 * 13 12 11
15 15 O 1.21285 * 119.99687 * 0.02562 * 14 13 12
16 16 C 1.50696 * 119.99959 * 180.02562 * 14 13 12
17 17 S 1.81003 * 109.46849 * 180.02562 * 16 14 13
18 18 C 1.76199 * 99.99863 * 179.97438 * 17 16 14
19 19 H 1.08002 * 120.00051 * 0.02562 * 18 17 16
20 20 C 1.38802 * 120.00257 * 179.97438 * 18 17 16
21 21 N 1.31631 * 119.99607 * 0.02562 * 20 18 17
22 22 Si 1.86796 * 120.00144 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47181 * 359.97438 * 22 20 18
24 24 H 1.48502 * 109.47301 * 119.99985 * 22 20 18
25 25 H 1.48499 * 109.47164 * 240.00120 * 22 20 18
26 26 C 1.53778 * 87.11368 * 25.36539 * 12 11 10
27 27 H 1.09001 * 109.46912 * 270.18208 * 1 2 3
28 28 H 1.09000 * 109.46670 * 30.17216 * 1 2 3
29 29 H 1.08992 * 109.47492 * 150.17455 * 1 2 3
30 30 H 1.08001 * 126.75608 * 179.97438 * 5 4 3
31 31 H 1.09002 * 109.47064 * 154.71331 * 7 6 2
32 32 H 1.09000 * 109.47099 * 34.71057 * 7 6 2
33 33 H 1.00896 * 111.00309 * 56.04484 * 8 7 6
34 34 H 1.08990 * 109.47358 * 299.99539 * 9 8 7
35 35 H 1.09004 * 109.47457 * 60.00221 * 9 8 7
36 36 H 1.08994 * 112.85237 * 45.33193 * 10 9 8
37 37 H 1.09000 * 113.61298 * 334.56770 * 11 10 9
38 38 H 1.08998 * 113.60893 * 105.47080 * 11 10 9
39 39 H 1.09006 * 113.74118 * 139.94432 * 12 11 10
40 40 H 0.96994 * 120.00415 * 72.50110 * 13 12 11
41 41 H 1.08998 * 109.47024 * 300.00417 * 16 14 13
42 42 H 1.09000 * 109.46914 * 60.00689 * 16 14 13
43 43 H 0.96999 * 119.99832 * 180.02562 * 21 20 18
44 44 H 1.08998 * 113.61648 * 220.08766 * 26 12 11
45 45 H 1.09005 * 113.61549 * 89.18176 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2192 1.0430 0.0000
4 7 3.4576 0.6950 -0.0051
5 6 3.5321 -0.6406 -0.0033
6 6 2.2578 -1.0966 0.0033
7 6 1.8115 -2.5360 0.0070
8 7 1.5573 -2.9663 1.3884
9 6 1.1199 -4.3681 1.4310
10 6 0.8661 -4.7792 2.8828
11 6 2.1281 -5.2654 3.6149
12 6 1.2413 -6.3484 4.2559
13 7 0.6159 -5.9249 5.5112
14 6 1.0508 -6.4273 6.6838
15 8 1.9603 -7.2295 6.6998
16 6 0.4071 -5.9921 7.9750
17 16 1.2067 -6.8362 9.3622
18 6 0.2852 -6.1608 10.7036
19 1 -0.5033 -5.4480 10.5123
20 6 0.5719 -6.5456 12.0060
21 7 1.5325 -7.4148 12.2391
22 14 -0.4056 -5.8301 13.4280
23 1 -1.4210 -4.8822 12.9032
24 1 -1.0849 -6.9269 14.1633
25 1 0.5126 -5.1118 14.3479
26 6 0.3211 -6.2095 3.0317
27 1 -0.3633 0.0033 1.0277
28 1 -0.3633 0.8885 -0.5165
29 1 -0.3634 -0.8915 -0.5111
30 1 4.4321 -1.2377 -0.0068
31 1 2.5917 -3.1594 -0.4300
32 1 0.8973 -2.6345 -0.5784
33 1 0.8840 -2.3634 1.8368
34 1 0.2011 -4.4797 0.8555
35 1 1.8956 -5.0039 1.0040
36 1 0.2974 -4.0350 3.4402
37 1 2.8926 -5.6651 2.9488
38 1 2.5233 -4.5438 4.3299
39 1 1.7238 -7.3229 4.3311
40 1 -0.1113 -5.2832 5.4985
41 1 0.5200 -4.9143 8.0921
42 1 -0.6526 -6.2466 7.9565
43 1 1.7327 -7.6840 13.1492
44 1 -0.7403 -6.2490 3.2765
45 1 0.5909 -6.8677 2.2057
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725058211.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:32:37
Heat of formation + Delta-G solvation = 54.648544 kcal
Electronic energy + Delta-G solvation = -25444.246397 eV
Core-core repulsion = 21624.751972 eV
Total energy + Delta-G solvation = -3819.494425 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-44.24528 -41.19042 -39.43639 -37.13440 -35.50725 -34.59636 -34.36651 -32.51433
-30.73938 -28.98146 -28.35776 -27.65528 -26.56590 -25.51194 -23.59536 -23.06148
-22.13145 -21.71117 -20.17150 -19.82187 -18.23196 -17.90787 -17.64047 -17.07049
-16.88488 -16.86265 -16.46125 -16.24022 -15.83510 -15.69797 -15.24643 -14.94106
-14.67959 -14.59037 -14.33914 -14.17286 -13.90944 -13.74076 -13.45976 -13.28486
-13.17330 -13.16351 -12.91980 -12.62015 -12.59421 -12.49679 -11.91877 -11.77304
-11.68754 -11.40584 -11.16326 -11.10154 -11.04607 -10.93613 -10.27484 -10.23352
-9.99634 -9.32410 -8.67174 -8.35269 -6.13298 0.55530 1.26871 1.41147
1.47108 1.49915 1.55741 1.58027 1.60858 2.25544 2.30220 2.98946
3.13099 3.31941 3.45677 3.63563 3.65323 3.84022 3.88026 3.94060
4.02143 4.06243 4.13810 4.24199 4.30691 4.47742 4.49651 4.54440
4.61137 4.64245 4.70287 4.76455 4.90023 4.91265 4.95543 4.97263
5.18833 5.22503 5.28542 5.35833 5.41686 5.62773 5.72461 6.01629
6.19587 6.37554 6.53560 7.06126 7.27717 7.48024 8.74223
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.015441 B = 0.001707 C = 0.001611
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1812.871499 B =16401.173792 C =17374.176530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.064 3.936
2 N -0.282 5.282
3 N -0.125 5.125
4 N -0.315 5.315
5 C -0.050 4.050
6 C -0.006 4.006
7 C 0.141 3.859
8 N -0.696 5.696
9 C 0.077 3.923
10 C -0.092 4.092
11 C -0.137 4.137
12 C 0.099 3.901
13 N -0.694 5.694
14 C 0.535 3.465
15 O -0.567 6.567
16 C -0.129 4.129
17 S -0.153 6.153
18 C -0.545 4.545
19 H 0.083 0.917
20 C 0.012 3.988
21 N -0.911 5.911
22 Si 1.000 3.000
23 H -0.256 1.256
24 H -0.273 1.273
25 H -0.275 1.275
26 C -0.119 4.119
27 H 0.106 0.894
28 H 0.109 0.891
29 H 0.126 0.874
30 H 0.205 0.795
31 H 0.113 0.887
32 H 0.070 0.930
33 H 0.342 0.658
34 H 0.056 0.944
35 H 0.082 0.918
36 H 0.093 0.907
37 H 0.095 0.905
38 H 0.047 0.953
39 H 0.073 0.927
40 H 0.415 0.585
41 H 0.108 0.892
42 H 0.111 0.889
43 H 0.271 0.729
44 H 0.085 0.915
45 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.151 10.308 -31.481 34.366
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 N -0.077 5.077
3 N -0.104 5.104
4 N -0.180 5.180
5 C -0.209 4.209
6 C -0.140 4.140
7 C 0.010 3.990
8 N -0.328 5.328
9 C -0.052 4.052
10 C -0.111 4.111
11 C -0.176 4.176
12 C -0.007 4.007
13 N -0.347 5.347
14 C 0.321 3.679
15 O -0.445 6.445
16 C -0.280 4.280
17 S 0.074 5.926
18 C -0.693 4.693
19 H 0.101 0.899
20 C -0.193 4.193
21 N -0.548 5.548
22 Si 0.821 3.179
23 H -0.180 1.180
24 H -0.199 1.199
25 H -0.200 1.200
26 C -0.158 4.158
27 H 0.125 0.875
28 H 0.128 0.872
29 H 0.144 0.856
30 H 0.222 0.778
31 H 0.131 0.869
32 H 0.088 0.912
33 H 0.160 0.840
34 H 0.074 0.926
35 H 0.100 0.900
36 H 0.111 0.889
37 H 0.114 0.886
38 H 0.066 0.934
39 H 0.092 0.908
40 H 0.252 0.748
41 H 0.126 0.874
42 H 0.129 0.871
43 H 0.080 0.920
44 H 0.103 0.897
45 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -6.905 10.319 -31.250 33.627
hybrid contribution -2.219 0.462 0.985 2.471
sum -9.124 10.781 -30.265 33.399
Atomic orbital electron populations
1.22732 0.70425 1.07730 1.06662 1.47600 1.10671 1.04051 1.45389
1.78242 0.96963 1.13229 1.21948 1.75048 1.10400 1.14474 1.18040
1.23865 0.99053 0.91139 1.06889 1.22469 0.90839 0.92411 1.08276
1.20414 1.02372 0.85523 0.90659 1.60387 1.52253 1.04231 1.15951
1.21953 0.99896 0.88105 0.95211 1.22471 0.96231 0.96297 0.96084
1.23423 0.97563 0.97425 0.99200 1.22099 0.96759 0.98518 0.83315
1.45414 1.38569 1.46495 1.04260 1.20076 0.82278 0.80138 0.85437
1.90689 1.31042 1.35331 1.87453 1.23370 1.04354 1.05105 0.95213
1.85603 1.49721 1.59495 0.97772 1.23239 1.22233 1.30733 0.93115
0.89869 1.26148 0.96452 0.95130 1.01557 1.70193 1.30634 1.31893
1.22059 0.84892 0.77985 0.78215 0.76771 1.17969 1.19871 1.20024
1.23279 0.99649 0.96859 0.95998 0.87513 0.87229 0.85576 0.77832
0.86931 0.91195 0.83975 0.92636 0.89969 0.88884 0.88639 0.93423
0.90847 0.74782 0.87393 0.87078 0.91998 0.89670 0.86958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.13 11.21 127.77 1.43 1.56 16
2 N -0.28 -3.59 3.74 -355.73 -1.33 -4.92 16
3 N -0.12 -2.72 13.16 37.02 0.49 -2.24 16
4 N -0.32 -7.65 12.41 -58.25 -0.72 -8.38 16
5 C -0.05 -0.86 11.99 83.73 1.00 0.14 16
6 C -0.01 -0.07 6.51 41.36 0.27 0.20 16
7 C 0.14 0.63 5.91 85.56 0.51 1.13 16
8 N -0.70 -4.58 6.49 -517.91 -3.36 -7.94 16
9 C 0.08 0.37 5.51 86.31 0.48 0.84 16
10 C -0.09 -0.82 3.77 -10.26 -0.04 -0.86 16
11 C -0.14 -2.31 7.44 31.18 0.23 -2.08 16
12 C 0.10 1.98 4.33 45.58 0.20 2.18 16
13 N -0.69 -16.49 5.26 -439.75 -2.31 -18.80 16
14 C 0.53 19.48 7.85 87.65 0.69 20.17 16
15 O -0.57 -26.39 15.46 -3.05 -0.05 -26.43 16
16 C -0.13 -5.06 6.16 71.23 0.44 -4.62 16
17 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16
18 C -0.55 -31.13 9.50 67.95 0.65 -30.48 16
19 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16
20 C 0.01 0.67 5.49 84.86 0.47 1.14 16
21 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16
22 Si 1.00 43.56 29.55 68.60 2.03 45.58 16
23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16
24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16
25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16
26 C -0.12 -1.18 7.39 31.12 0.23 -0.95 16
27 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16
28 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16
29 H 0.13 -0.52 7.22 -2.39 -0.02 -0.54 16
30 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16
31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16
32 H 0.07 -0.02 7.31 -2.39 -0.02 -0.04 16
33 H 0.34 2.00 8.72 -89.70 -0.78 1.22 16
34 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16
35 H 0.08 0.41 7.87 -2.38 -0.02 0.40 16
36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
37 H 0.10 1.47 7.92 -2.39 -0.02 1.46 16
38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
39 H 0.07 1.93 7.46 -2.38 -0.02 1.91 16
40 H 0.42 6.86 8.70 -92.71 -0.81 6.06 16
41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16
42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16
43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16
44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
45 H 0.11 0.77 8.10 -2.38 -0.02 0.75 16
Total: -1.00 -88.28 395.01 -0.16 -88.44
By element:
Atomic # 1 Polarization: 12.42 SS G_CDS: -0.57 Total: 11.85 kcal
Atomic # 6 Polarization: -18.17 SS G_CDS: 6.55 Total: -11.62 kcal
Atomic # 7 Polarization: -91.17 SS G_CDS: -6.95 Total: -98.13 kcal
Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.43 kcal
Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal
Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal
Total: -88.28 -0.16 -88.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725058211.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.086 kcal
(2) G-P(sol) polarization free energy of solvation -88.278 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.649 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds