Wall clock time and date at job start Tue Mar 31 2020 23:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47397 * 269.99887 * 3 2 1 5 5 H 1.48503 * 109.46974 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.99596 * 3 2 1 7 7 C 1.38810 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99943 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49317 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11743 * 155.36180 * 10 9 7 12 12 C 1.53006 * 113.73878 * 269.15347 * 11 10 9 13 13 C 1.52998 * 109.46643 * 172.51438 * 12 11 10 14 14 O 1.42908 * 109.46626 * 175.18815 * 13 12 11 15 15 N 1.46494 * 113.74191 * 137.95441 * 11 10 9 16 16 C 1.34777 * 120.00299 * 74.85790 * 15 11 10 17 17 O 1.21287 * 119.99943 * 355.08282 * 16 15 11 18 18 C 1.50704 * 120.00123 * 175.07615 * 16 15 11 19 19 C 1.53002 * 109.46901 * 180.02562 * 18 16 15 20 20 N 1.46502 * 109.46850 * 180.02562 * 19 18 16 21 21 C 1.33873 * 122.76264 * 269.70654 * 20 19 18 22 22 O 1.21229 * 125.39382 * 359.97438 * 21 20 19 23 23 C 1.51314 * 109.20901 * 179.84454 * 21 20 19 24 24 C 1.54229 * 103.55329 * 0.38803 * 23 21 20 25 25 C 1.33876 * 122.76194 * 89.99948 * 20 19 18 26 26 O 1.21228 * 125.39573 * 359.97438 * 25 20 19 27 27 C 1.47814 * 134.45910 * 359.86958 * 9 7 2 28 28 H 0.97007 * 120.00429 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.76900 * 41.05592 * 10 9 7 30 30 H 1.09002 * 113.87293 * 269.67399 * 10 9 7 31 31 H 1.08992 * 109.46969 * 292.51306 * 12 11 10 32 32 H 1.08993 * 109.47095 * 52.51674 * 12 11 10 33 33 H 1.09000 * 109.47309 * 295.18605 * 13 12 11 34 34 H 1.09002 * 109.47667 * 55.19092 * 13 12 11 35 35 H 0.96702 * 114.00035 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00436 * 254.85857 * 15 11 10 37 37 H 1.08997 * 109.47200 * 60.00337 * 18 16 15 38 38 H 1.08996 * 109.47133 * 300.00046 * 18 16 15 39 39 H 1.09006 * 109.47027 * 299.99676 * 19 18 16 40 40 H 1.08997 * 109.47212 * 59.99985 * 19 18 16 41 41 H 1.08994 * 110.79529 * 241.77939 * 23 21 20 42 42 H 1.08997 * 110.55061 * 118.87713 * 23 21 20 43 43 H 1.09001 * 110.60374 * 241.26300 * 24 23 21 44 44 H 1.08998 * 110.60758 * 118.29537 * 24 23 21 45 45 H 1.09005 * 113.77109 * 90.37525 * 27 9 7 46 46 H 1.09001 * 113.83501 * 318.91894 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.7202 -3.8101 0.0029 11 6 0.3470 -4.0823 0.6434 12 6 0.3645 -4.0542 2.1731 13 6 -1.0684 -4.1487 2.7012 14 8 -1.0455 -4.2354 4.1275 15 7 -0.3333 -5.2612 0.1016 16 6 0.0812 -6.4964 0.4465 17 8 1.0713 -6.6340 1.1333 18 6 -0.6857 -7.7065 -0.0211 19 6 -0.0095 -8.9738 0.5059 20 7 -0.7547 -10.1501 0.0509 21 6 -1.7569 -10.6900 0.7554 22 8 -2.1606 -10.2863 1.8248 23 6 -2.3080 -11.8821 0.0038 24 6 -1.4347 -11.9441 -1.2659 25 6 -0.4857 -10.7772 -1.1010 26 8 0.3806 -10.4600 -1.8875 27 6 -0.1057 -2.7570 0.0048 28 1 -0.4851 0.8401 -0.0004 29 1 2.5624 -4.0317 0.6582 30 1 1.8326 -4.2376 -0.9935 31 1 0.9453 -4.8981 2.5454 32 1 0.8168 -3.1231 2.5143 33 1 -1.6258 -3.2618 2.4000 34 1 -1.5491 -5.0368 2.2909 35 1 -1.9217 -4.2985 4.5318 36 1 -1.0820 -5.1528 -0.5054 37 1 -0.7006 -7.7285 -1.1107 38 1 -1.7074 -7.6569 0.3553 39 1 1.0124 -9.0236 0.1298 40 1 0.0050 -8.9515 1.5956 41 1 -3.3544 -11.7247 -0.2576 42 1 -2.1937 -12.7920 0.5929 43 1 -2.0468 -11.8176 -2.1589 44 1 -0.8839 -12.8838 -1.3071 45 1 -0.5319 -2.8726 -0.9918 46 1 -0.7184 -2.1396 0.6617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725199999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:20 Heat of formation + Delta-G solvation = -92.129020 kcal Electronic energy + Delta-G solvation = -30077.794340 eV Core-core repulsion = 25776.889541 eV Total energy + Delta-G solvation = -4300.904800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24549 -40.05781 -38.92179 -37.98305 -36.35270 -36.23588 -34.46821 -33.66943 -32.02998 -30.87158 -30.06231 -27.13023 -26.61922 -25.06441 -25.02105 -23.18667 -22.77268 -21.67672 -20.26278 -19.74298 -18.69380 -17.89307 -17.32203 -17.07341 -16.84942 -16.79572 -16.55586 -15.57673 -15.35820 -15.02337 -14.71542 -14.66204 -14.60202 -14.35908 -14.32144 -13.90564 -13.73968 -13.57140 -13.21351 -13.16630 -12.67156 -12.50214 -11.90106 -11.88693 -11.74062 -11.59272 -11.41311 -11.05435 -11.01163 -10.94980 -10.76756 -10.69320 -10.41077 -10.23258 -10.16713 -9.98995 -9.70008 -9.58258 -9.18569 -8.89668 -8.59310 -6.94201 -5.81571 -3.13361 1.11061 2.09609 2.29607 2.81932 3.37109 3.41509 3.45234 3.47063 3.61966 3.76162 3.93605 4.32107 4.44431 4.49469 4.59617 4.72106 4.80417 4.93821 5.06060 5.08775 5.15465 5.18330 5.21605 5.32948 5.42416 5.47402 5.55441 5.70277 5.74787 5.82893 5.96044 6.32008 6.45704 6.47165 6.49299 6.63205 6.78142 6.83768 6.92082 7.09851 7.28839 7.37649 7.46862 7.78910 7.92226 7.92949 8.46795 9.00436 9.66518 10.52619 11.36123 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.002502 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.380613 B =11188.413371 C =12056.606501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.604 5.604 10 C 0.124 3.876 11 C 0.124 3.876 12 C -0.096 4.096 13 C 0.083 3.917 14 O -0.574 6.574 15 N -0.714 5.714 16 C 0.518 3.482 17 O -0.534 6.534 18 C -0.157 4.157 19 C 0.115 3.885 20 N -0.575 5.575 21 C 0.523 3.477 22 O -0.477 6.477 23 C -0.157 4.157 24 C -0.157 4.157 25 C 0.523 3.477 26 O -0.476 6.476 27 C 0.166 3.834 28 H 0.254 0.746 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.372 0.628 36 H 0.398 0.602 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.030 0.970 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 -24.952 -1.578 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.331 5.331 10 C -0.003 4.003 11 C 0.038 3.962 12 C -0.135 4.135 13 C 0.006 3.994 14 O -0.379 6.379 15 N -0.365 5.365 16 C 0.303 3.697 17 O -0.410 6.410 18 C -0.199 4.199 19 C -0.006 4.006 20 N -0.318 5.318 21 C 0.312 3.688 22 O -0.348 6.348 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.312 3.688 26 O -0.347 6.347 27 C 0.040 3.960 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.217 0.783 36 H 0.232 0.768 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.048 0.952 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.335 -24.218 -0.999 25.632 hybrid contribution -0.637 1.011 -0.545 1.314 sum -8.973 -23.207 -1.545 24.929 Atomic orbital electron populations 1.69783 1.05020 1.25457 1.56761 1.24773 0.95723 0.97565 1.02308 0.86087 0.78712 0.83242 0.77549 1.21624 1.21597 1.20525 1.19005 0.90328 0.81525 1.43781 0.89977 1.45696 1.01839 0.99497 1.86033 1.22855 0.94737 0.85750 0.96934 1.22970 0.95438 0.84372 0.93416 1.21336 0.95651 1.04491 0.92010 1.22116 0.98326 0.98957 0.80030 1.86499 1.33479 1.97287 1.20601 1.46196 1.36056 1.05476 1.48776 1.20158 0.84920 0.84237 0.80387 1.90707 1.25770 1.86233 1.38320 1.21953 1.01182 0.93420 1.03304 1.21524 0.95988 0.81117 1.02010 1.46853 1.33607 1.29207 1.22164 1.20875 0.78658 0.84603 0.84649 1.90817 1.59703 1.64743 1.19534 1.22481 1.02394 0.98498 0.96329 1.22487 0.97999 0.98932 1.00273 1.20884 0.83983 0.84075 0.79882 1.90822 1.31830 1.67771 1.44283 1.22579 0.89025 0.87479 0.96886 0.93594 0.93050 0.94640 0.90183 0.89256 0.93364 0.94734 0.78276 0.76836 0.88530 0.88592 0.87808 0.87817 0.86060 0.86154 0.86067 0.86124 0.95217 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 11.39 55.49 0.63 -26.13 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.43 3.55 -177.50 -0.63 -16.06 16 10 C 0.12 2.71 8.04 -2.96 -0.02 2.69 16 11 C 0.12 2.36 0.68 -134.04 -0.09 2.27 16 12 C -0.10 -1.89 4.67 -26.73 -0.12 -2.02 16 13 C 0.08 1.40 6.86 37.16 0.25 1.65 16 14 O -0.57 -9.49 13.66 -35.23 -0.48 -9.97 16 15 N -0.71 -10.60 4.52 -49.08 -0.22 -10.82 16 16 C 0.52 7.62 7.39 -10.98 -0.08 7.54 16 17 O -0.53 -9.75 14.16 5.55 0.08 -9.67 16 18 C -0.16 -1.69 6.03 -27.88 -0.17 -1.86 16 19 C 0.11 1.26 4.85 -4.04 -0.02 1.24 16 20 N -0.57 -5.01 2.55 -115.34 -0.29 -5.30 16 21 C 0.52 4.16 8.08 -11.09 -0.09 4.07 16 22 O -0.48 -5.64 17.47 5.60 0.10 -5.54 16 23 C -0.16 -0.45 7.03 -26.94 -0.19 -0.64 16 24 C -0.16 -0.45 7.03 -26.94 -0.19 -0.64 16 25 C 0.52 4.20 8.08 -11.08 -0.09 4.11 16 26 O -0.48 -5.71 17.48 5.60 0.10 -5.61 16 27 C 0.17 3.73 6.69 -2.85 -0.02 3.71 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.66 6.54 -51.93 -0.34 1.32 16 32 H 0.09 2.02 8.02 -51.93 -0.42 1.60 16 33 H 0.05 0.82 7.61 -51.93 -0.40 0.42 16 34 H 0.03 0.52 7.43 -51.93 -0.39 0.14 16 35 H 0.37 4.15 9.12 45.56 0.42 4.56 16 36 H 0.40 4.80 8.67 -40.82 -0.35 4.44 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.26 7.79 -51.93 -0.40 0.85 16 40 H 0.10 1.26 7.78 -51.93 -0.40 0.86 16 41 H 0.12 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.12 0.15 8.14 -51.93 -0.42 -0.28 16 44 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 2.02 6.59 -51.93 -0.34 1.67 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -37.42 386.18 -6.99 -44.40 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.97 Total: 6.19 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -1.09 Total: 15.53 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.51 Total: -58.32 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.21 Total: -30.79 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.42 -6.99 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725199999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.727 kcal (2) G-P(sol) polarization free energy of solvation -37.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds