Wall clock time and date at job start Tue Mar 31 2020 23:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47397 * 269.99887 * 3 2 1 5 5 H 1.48503 * 109.46974 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.99596 * 3 2 1 7 7 C 1.38810 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99943 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49317 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11743 * 155.36180 * 10 9 7 12 12 C 1.53006 * 113.73878 * 269.15347 * 11 10 9 13 13 C 1.52998 * 109.46643 * 172.51438 * 12 11 10 14 14 O 1.42908 * 109.46626 * 175.18815 * 13 12 11 15 15 N 1.46494 * 113.74191 * 137.95441 * 11 10 9 16 16 C 1.34777 * 120.00299 * 74.85790 * 15 11 10 17 17 O 1.21287 * 119.99943 * 355.08282 * 16 15 11 18 18 C 1.50704 * 120.00123 * 175.07615 * 16 15 11 19 19 C 1.53002 * 109.46901 * 180.02562 * 18 16 15 20 20 N 1.46502 * 109.46850 * 180.02562 * 19 18 16 21 21 C 1.33873 * 122.76264 * 269.70654 * 20 19 18 22 22 O 1.21229 * 125.39382 * 359.97438 * 21 20 19 23 23 C 1.51314 * 109.20901 * 179.84454 * 21 20 19 24 24 C 1.54229 * 103.55329 * 0.38803 * 23 21 20 25 25 C 1.33876 * 122.76194 * 89.99948 * 20 19 18 26 26 O 1.21228 * 125.39573 * 359.97438 * 25 20 19 27 27 C 1.47814 * 134.45910 * 359.86958 * 9 7 2 28 28 H 0.97007 * 120.00429 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.76900 * 41.05592 * 10 9 7 30 30 H 1.09002 * 113.87293 * 269.67399 * 10 9 7 31 31 H 1.08992 * 109.46969 * 292.51306 * 12 11 10 32 32 H 1.08993 * 109.47095 * 52.51674 * 12 11 10 33 33 H 1.09000 * 109.47309 * 295.18605 * 13 12 11 34 34 H 1.09002 * 109.47667 * 55.19092 * 13 12 11 35 35 H 0.96702 * 114.00035 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00436 * 254.85857 * 15 11 10 37 37 H 1.08997 * 109.47200 * 60.00337 * 18 16 15 38 38 H 1.08996 * 109.47133 * 300.00046 * 18 16 15 39 39 H 1.09006 * 109.47027 * 299.99676 * 19 18 16 40 40 H 1.08997 * 109.47212 * 59.99985 * 19 18 16 41 41 H 1.08994 * 110.79529 * 241.77939 * 23 21 20 42 42 H 1.08997 * 110.55061 * 118.87713 * 23 21 20 43 43 H 1.09001 * 110.60374 * 241.26300 * 24 23 21 44 44 H 1.08998 * 110.60758 * 118.29537 * 24 23 21 45 45 H 1.09005 * 113.77109 * 90.37525 * 27 9 7 46 46 H 1.09001 * 113.83501 * 318.91894 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.7202 -3.8101 0.0029 11 6 0.3470 -4.0823 0.6434 12 6 0.3645 -4.0542 2.1731 13 6 -1.0684 -4.1487 2.7012 14 8 -1.0455 -4.2354 4.1275 15 7 -0.3333 -5.2612 0.1016 16 6 0.0812 -6.4964 0.4465 17 8 1.0713 -6.6340 1.1333 18 6 -0.6857 -7.7065 -0.0211 19 6 -0.0095 -8.9738 0.5059 20 7 -0.7547 -10.1501 0.0509 21 6 -1.7569 -10.6900 0.7554 22 8 -2.1606 -10.2863 1.8248 23 6 -2.3080 -11.8821 0.0038 24 6 -1.4347 -11.9441 -1.2659 25 6 -0.4857 -10.7772 -1.1010 26 8 0.3806 -10.4600 -1.8875 27 6 -0.1057 -2.7570 0.0048 28 1 -0.4851 0.8401 -0.0004 29 1 2.5624 -4.0317 0.6582 30 1 1.8326 -4.2376 -0.9935 31 1 0.9453 -4.8981 2.5454 32 1 0.8168 -3.1231 2.5143 33 1 -1.6258 -3.2618 2.4000 34 1 -1.5491 -5.0368 2.2909 35 1 -1.9217 -4.2985 4.5318 36 1 -1.0820 -5.1528 -0.5054 37 1 -0.7006 -7.7285 -1.1107 38 1 -1.7074 -7.6569 0.3553 39 1 1.0124 -9.0236 0.1298 40 1 0.0050 -8.9515 1.5956 41 1 -3.3544 -11.7247 -0.2576 42 1 -2.1937 -12.7920 0.5929 43 1 -2.0468 -11.8176 -2.1589 44 1 -0.8839 -12.8838 -1.3071 45 1 -0.5319 -2.8726 -0.9918 46 1 -0.7184 -2.1396 0.6617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725199999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:19 Heat of formation + Delta-G solvation = -122.907706 kcal Electronic energy + Delta-G solvation = -30079.129004 eV Core-core repulsion = 25776.889541 eV Total energy + Delta-G solvation = -4302.239464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.86307 -41.52745 -39.62967 -39.50466 -37.73960 -36.97227 -35.32685 -35.08881 -33.83191 -32.16123 -31.19461 -29.04170 -27.06256 -26.88094 -26.12156 -24.74250 -23.33824 -23.26278 -21.62068 -20.45633 -20.19497 -18.84109 -18.71496 -18.45460 -17.86256 -17.64575 -17.49767 -17.06914 -16.75280 -16.50100 -16.02873 -15.73594 -15.63907 -15.27246 -15.25387 -15.11583 -14.88147 -14.58766 -14.46540 -14.27422 -13.76752 -13.53360 -13.39477 -13.37617 -13.21419 -12.91022 -12.82267 -12.61099 -12.37708 -12.28626 -12.07623 -12.04945 -11.77852 -11.65854 -11.48644 -11.10924 -11.05705 -10.96507 -10.89446 -10.61874 -10.07816 -8.99158 -7.95576 -5.28644 0.52083 1.42345 1.44966 1.46259 1.54760 1.59679 1.71325 2.16488 2.48051 3.10847 3.23273 3.25295 3.31382 3.36069 3.59440 3.62214 3.68340 3.84680 3.86469 4.09014 4.21972 4.24259 4.29998 4.33205 4.41354 4.45082 4.55092 4.68069 4.68640 4.80439 4.81409 4.83630 4.95971 4.99273 4.99732 5.10942 5.14755 5.19355 5.44659 5.66948 5.84811 5.86675 6.35349 6.56524 6.75237 6.86994 6.87918 7.25041 7.54121 8.47181 9.21357 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.002502 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.380613 B =11188.413371 C =12056.606501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.058 4.058 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.631 5.631 10 C 0.121 3.879 11 C 0.155 3.845 12 C -0.090 4.090 13 C 0.093 3.907 14 O -0.592 6.592 15 N -0.704 5.704 16 C 0.518 3.482 17 O -0.570 6.570 18 C -0.140 4.140 19 C 0.115 3.885 20 N -0.579 5.579 21 C 0.518 3.482 22 O -0.522 6.522 23 C -0.140 4.140 24 C -0.140 4.140 25 C 0.518 3.482 26 O -0.524 6.524 27 C 0.173 3.827 28 H 0.252 0.748 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.416 0.584 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.036 0.964 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 -27.347 -2.569 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.358 5.358 10 C -0.005 4.005 11 C 0.067 3.933 12 C -0.129 4.129 13 C 0.016 3.984 14 O -0.400 6.400 15 N -0.357 5.357 16 C 0.305 3.695 17 O -0.449 6.449 18 C -0.181 4.181 19 C -0.008 4.008 20 N -0.321 5.321 21 C 0.310 3.690 22 O -0.396 6.396 23 C -0.179 4.179 24 C -0.179 4.179 25 C 0.309 3.691 26 O -0.398 6.398 27 C 0.047 3.953 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.253 0.747 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.054 0.946 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.419 -26.674 -2.008 28.707 hybrid contribution 0.038 1.682 -0.197 1.694 sum -10.381 -24.993 -2.205 27.153 Atomic orbital electron populations 1.69933 1.06107 1.25875 1.57588 1.25556 0.96689 1.00535 1.02430 0.85088 0.77637 0.79104 0.77536 1.21093 1.21642 1.19840 1.19303 0.90670 0.82986 1.43613 0.90345 1.45972 1.03436 1.00129 1.86283 1.22950 0.96043 0.84263 0.97291 1.22217 0.93461 0.84763 0.92809 1.21190 0.97472 1.01847 0.92409 1.21939 0.96047 0.99930 0.80522 1.86439 1.35969 1.97311 1.20303 1.45945 1.36309 1.04377 1.49052 1.20817 0.84492 0.84846 0.79365 1.90705 1.27574 1.86717 1.39923 1.21845 1.01191 0.90831 1.04208 1.21264 0.95776 0.82759 1.00977 1.47039 1.33714 1.28531 1.22848 1.21838 0.77716 0.85377 0.84051 1.90798 1.60952 1.66302 1.21590 1.22605 1.03352 0.96497 0.95419 1.22613 0.96880 0.97089 1.01300 1.21862 0.83804 0.84787 0.78597 1.90803 1.34083 1.69270 1.45625 1.22459 0.87372 0.88610 0.96847 0.93934 0.94308 0.93810 0.91395 0.92995 0.93487 0.92399 0.75411 0.74704 0.86732 0.86476 0.89658 0.89531 0.83298 0.83710 0.83370 0.83709 0.94586 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.83 11.39 21.65 0.25 -55.58 16 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -13.68 10.70 84.03 0.90 -12.78 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -33.19 3.55 -715.49 -2.54 -35.73 16 10 C 0.12 5.43 8.04 86.49 0.70 6.12 16 11 C 0.16 5.98 0.68 5.35 0.00 5.98 16 12 C -0.09 -3.65 4.67 30.60 0.14 -3.51 16 13 C 0.09 3.09 6.86 71.98 0.49 3.58 16 14 O -0.59 -19.16 13.66 -148.98 -2.04 -21.19 16 15 N -0.70 -20.29 4.52 -427.57 -1.93 -22.22 16 16 C 0.52 14.95 7.39 87.66 0.65 15.60 16 17 O -0.57 -21.25 14.16 -3.05 -0.04 -21.29 16 18 C -0.14 -2.81 6.03 29.85 0.18 -2.63 16 19 C 0.11 2.53 4.85 86.38 0.42 2.95 16 20 N -0.58 -9.30 2.55 -756.65 -1.93 -11.23 16 21 C 0.52 7.13 8.08 87.99 0.71 7.84 16 22 O -0.52 -11.77 17.47 -2.87 -0.05 -11.82 16 23 C -0.14 -0.17 7.03 30.46 0.21 0.05 16 24 C -0.14 -0.19 7.03 30.46 0.21 0.02 16 25 C 0.52 7.29 8.08 87.99 0.71 8.00 16 26 O -0.52 -12.17 17.48 -2.87 -0.05 -12.22 16 27 C 0.17 7.88 6.69 86.43 0.58 8.46 16 28 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 29 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.91 6.54 -2.39 -0.02 2.90 16 32 H 0.05 2.47 8.02 -2.39 -0.02 2.45 16 33 H 0.05 1.58 7.61 -2.39 -0.02 1.56 16 34 H 0.06 1.65 7.43 -2.39 -0.02 1.63 16 35 H 0.40 8.23 9.12 -74.06 -0.68 7.55 16 36 H 0.42 9.22 8.67 -92.71 -0.80 8.41 16 37 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 2.17 7.79 -2.38 -0.02 2.15 16 40 H 0.09 2.19 7.78 -2.39 -0.02 2.17 16 41 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.15 -0.40 8.14 -2.39 -0.02 -0.41 16 43 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.15 -0.37 8.14 -2.39 -0.02 -0.38 16 45 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.06 2.97 6.59 -2.39 -0.02 2.95 16 Total: -1.00 -85.89 386.18 -0.38 -86.28 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.45 Total: 19.95 kcal Atomic # 6 Polarization: 30.44 SS G_CDS: 6.38 Total: 36.82 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -6.16 Total: -124.76 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -2.18 Total: -66.52 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -85.89 -0.38 -86.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725199999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.629 kcal (2) G-P(sol) polarization free energy of solvation -85.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds