Wall clock time and date at job start Tue Mar 31 2020 23:08:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86794 * 120.00193 * 2 1
4 4 H 1.48499 * 109.47144 * 270.00158 * 3 2 1
5 5 H 1.48497 * 109.47180 * 30.00286 * 3 2 1
6 6 H 1.48503 * 109.47174 * 149.99954 * 3 2 1
7 7 C 1.38816 * 119.99722 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99638 * 180.02562 * 7 2 1
9 9 N 1.36933 * 120.00237 * 359.97438 * 7 2 1
10 10 C 1.47425 * 125.64707 * 359.97438 * 9 7 2
11 11 C 1.54911 * 104.83122 * 155.90615 * 10 9 7
12 12 C 1.55157 * 101.61874 * 36.99068 * 11 10 9
13 13 H 1.09001 * 110.72044 * 82.87588 * 12 11 10
14 14 C 1.52998 * 110.72109 * 206.15499 * 12 11 10
15 15 C 1.52994 * 109.47195 * 184.99781 * 14 12 11
16 16 N 1.46500 * 109.47267 * 179.97438 * 15 14 12
17 17 C 1.34775 * 119.99937 * 179.97438 * 16 15 14
18 18 O 1.21553 * 120.00189 * 0.02562 * 17 16 15
19 19 C 1.47846 * 119.99800 * 179.97438 * 17 16 15
20 20 C 1.40021 * 120.55953 * 354.35716 * 19 17 16
21 21 C 1.38356 * 118.28989 * 179.97438 * 20 19 17
22 22 C 1.38346 * 119.30138 * 0.02562 * 21 20 19
23 23 N 1.31932 * 121.08293 * 0.02562 * 22 21 20
24 24 C 1.31691 * 121.87388 * 359.68167 * 23 22 21
25 25 C 1.50705 * 119.71433 * 180.29024 * 24 23 22
26 26 F 1.39893 * 109.47077 * 122.83731 * 25 24 23
27 27 F 1.39908 * 109.47108 * 242.83687 * 25 24 23
28 28 C 1.47024 * 125.64973 * 180.02562 * 9 7 2
29 29 H 0.96995 * 119.99460 * 359.97438 * 1 2 3
30 30 H 1.08999 * 110.36709 * 37.06468 * 10 9 7
31 31 H 1.09005 * 110.45656 * 274.78711 * 10 9 7
32 32 H 1.09001 * 111.00288 * 155.08191 * 11 10 9
33 33 H 1.08998 * 111.00359 * 278.89125 * 11 10 9
34 34 H 1.09006 * 109.46679 * 304.99408 * 14 12 11
35 35 H 1.08994 * 109.47318 * 64.99682 * 14 12 11
36 36 H 1.09002 * 109.47217 * 300.00151 * 15 14 12
37 37 H 1.09010 * 109.47352 * 59.99973 * 15 14 12
38 38 H 0.97001 * 120.00027 * 0.02562 * 16 15 14
39 39 H 1.08002 * 120.85507 * 359.97438 * 20 19 17
40 40 H 1.08000 * 120.34939 * 180.02562 * 21 20 19
41 41 H 1.07999 * 119.46271 * 180.02562 * 22 21 20
42 42 H 1.08993 * 109.47136 * 2.83201 * 25 24 23
43 43 H 1.08999 * 109.88443 * 300.44395 * 28 9 7
44 44 H 1.09001 * 109.87890 * 61.60942 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4478 2.6526 0.7001
6 1 3.5478 1.4401 0.7001
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 -0.1415 -2.5331 0.0005
11 6 -0.4021 -3.9323 -0.6112
12 6 0.7783 -4.7531 -0.0279
13 1 0.5467 -5.0993 0.9794
14 6 1.1218 -5.9315 -0.9413
15 6 2.2017 -6.7908 -0.2809
16 7 2.5303 -7.9194 -1.1553
17 6 3.4630 -8.8156 -0.7770
18 8 4.0314 -8.6878 0.2898
19 6 3.7942 -9.9549 -1.6592
20 6 3.0659 -10.1811 -2.8335
21 6 3.4162 -11.2608 -3.6246
22 6 4.4643 -12.0748 -3.2337
23 7 5.1323 -11.8379 -2.1209
24 6 4.8405 -10.8201 -1.3379
25 6 5.6400 -10.5912 -0.0811
26 9 6.1956 -9.3077 -0.1091
27 9 4.8024 -10.7126 1.0330
28 6 1.9317 -3.7275 -0.0005
29 1 -0.4849 0.8400 0.0004
30 1 -0.5998 -1.7588 -0.6146
31 1 -0.5283 -2.4863 1.0186
32 1 -1.3592 -4.3327 -0.2770
33 1 -0.3540 -3.8979 -1.6996
34 1 0.2291 -6.5344 -1.1078
35 1 1.4898 -5.5559 -1.8961
36 1 3.0944 -6.1878 -0.1144
37 1 1.8337 -7.1665 0.6739
38 1 2.0770 -8.0212 -2.0068
39 1 2.2517 -9.5296 -3.1146
40 1 2.8772 -11.4659 -4.5377
41 1 4.7402 -12.9181 -3.8495
42 1 6.4377 -11.3312 -0.0181
43 1 2.5578 -3.8512 -0.8842
44 1 2.5286 -3.8642 0.9012
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732053040.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:08:14
Heat of formation + Delta-G solvation = -71.117653 kcal
Electronic energy + Delta-G solvation = -28970.579475 eV
Core-core repulsion = 24559.498281 eV
Total energy + Delta-G solvation = -4411.081194 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-48.92806 -46.90606 -41.12282 -39.36810 -37.80084 -35.38951 -33.71782 -32.91595
-32.56999 -30.76479 -29.00481 -27.44100 -26.48604 -25.19288 -24.50665 -22.96736
-22.18036 -21.14144 -20.09641 -19.42762 -18.51652 -17.88709 -17.57652 -17.22562
-16.88626 -16.51111 -15.85869 -15.69441 -15.52922 -15.16291 -14.80120 -14.58244
-14.32753 -13.77484 -13.72382 -13.58070 -13.48225 -13.46286 -13.16820 -12.53192
-12.49069 -12.28168 -11.93074 -11.71598 -11.58679 -11.54948 -11.09295 -10.90489
-10.74741 -10.62484 -10.48151 -10.17426 -10.12716 -9.97360 -9.87620 -9.86946
-9.73292 -9.45500 -9.18632 -8.62121 -6.79333 -5.62498 -3.03704 -0.02405
0.41946 2.48133 2.81131 3.00119 3.21538 3.41792 3.46884 3.49097
3.83109 4.02034 4.07684 4.15171 4.36820 4.51886 4.62614 4.72795
4.87218 4.91460 4.94185 5.07374 5.22869 5.27411 5.35451 5.49949
5.58964 5.61511 5.76546 5.80391 5.88041 6.00834 6.12626 6.20844
6.31360 6.39709 6.61624 6.64920 6.78806 6.99497 7.07965 7.22913
7.55126 7.66542 7.88478 7.93935 8.39696 9.25736 9.86775 10.52090
11.41509
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.019222 B = 0.002142 C = 0.002055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1456.314090 B =13069.618544 C =13619.592419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.924 5.924
2 C -0.013 4.013
3 Si 0.914 3.086
4 H -0.289 1.289
5 H -0.290 1.290
6 H -0.282 1.282
7 C -0.220 4.220
8 H 0.077 0.923
9 N -0.605 5.605
10 C 0.151 3.849
11 C -0.138 4.138
12 C -0.098 4.098
13 H 0.073 0.927
14 C -0.116 4.116
15 C 0.118 3.882
16 N -0.720 5.720
17 C 0.548 3.452
18 O -0.503 6.503
19 C -0.145 4.145
20 C -0.046 4.046
21 C -0.158 4.158
22 C 0.120 3.880
23 N -0.462 5.462
24 C 0.102 3.898
25 C 0.336 3.664
26 F -0.182 7.182
27 F -0.181 7.181
28 C 0.139 3.861
29 H 0.251 0.749
30 H 0.105 0.895
31 H 0.011 0.989
32 H 0.056 0.944
33 H 0.059 0.941
34 H 0.065 0.935
35 H 0.070 0.930
36 H 0.076 0.924
37 H 0.071 0.929
38 H 0.397 0.603
39 H 0.147 0.853
40 H 0.150 0.850
41 H 0.170 0.830
42 H 0.123 0.877
43 H 0.022 0.978
44 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.601 -27.364 -9.077 29.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.209 4.209
3 Si 0.745 3.255
4 H -0.216 1.216
5 H -0.217 1.217
6 H -0.207 1.207
7 C -0.349 4.349
8 H 0.095 0.905
9 N -0.331 5.331
10 C 0.026 3.974
11 C -0.177 4.177
12 C -0.117 4.117
13 H 0.091 0.909
14 C -0.154 4.154
15 C -0.004 4.004
16 N -0.372 5.372
17 C 0.332 3.668
18 O -0.378 6.378
19 C -0.151 4.151
20 C -0.073 4.073
21 C -0.177 4.177
22 C -0.038 4.038
23 N -0.171 5.171
24 C -0.039 4.039
25 C 0.282 3.718
26 F -0.163 7.163
27 F -0.162 7.162
28 C 0.013 3.987
29 H 0.062 0.938
30 H 0.123 0.877
31 H 0.029 0.971
32 H 0.075 0.925
33 H 0.078 0.922
34 H 0.084 0.916
35 H 0.089 0.911
36 H 0.094 0.906
37 H 0.089 0.911
38 H 0.231 0.769
39 H 0.165 0.835
40 H 0.168 0.832
41 H 0.188 0.812
42 H 0.140 0.860
43 H 0.040 0.960
44 H 0.038 0.962
Dipole moment (debyes) X Y Z Total
from point charges 5.662 -27.532 -7.992 29.222
hybrid contribution -0.592 1.379 -0.707 1.658
sum 5.070 -26.153 -8.699 28.024
Atomic orbital electron populations
1.69805 1.04882 1.24672 1.57915 1.24787 0.95739 0.97709 1.02621
0.86071 0.78564 0.83350 0.77540 1.21638 1.21668 1.20727 1.19101
0.90528 0.82555 1.42691 0.90535 1.44520 1.02003 0.99824 1.86792
1.21921 0.84711 0.92624 0.98145 1.23040 0.95847 0.98893 0.99929
1.22101 0.97574 0.93713 0.98330 0.90864 1.21798 0.97407 0.96539
0.99692 1.21581 0.99403 0.86145 0.93286 1.45906 1.40819 1.27126
1.23326 1.17942 0.80526 0.82141 0.86204 1.90922 1.50261 1.74365
1.22243 1.20933 0.98530 0.98264 0.97326 1.21867 0.97371 0.96335
0.91678 1.22285 0.98658 0.95471 1.01302 1.23029 0.90829 0.98095
0.91803 1.67360 1.28098 1.16919 1.04687 1.21922 0.94114 0.91359
0.96504 1.19822 0.88380 0.83424 0.80217 1.93062 1.85229 1.41594
1.96390 1.93061 1.73812 1.95911 1.53389 1.21381 0.93647 0.85901
0.97724 0.93805 0.87699 0.97140 0.92503 0.92240 0.91618 0.91138
0.90555 0.91087 0.76861 0.83514 0.83198 0.81247 0.85969 0.95991
0.96194
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.26 10.09 55.49 0.56 -26.70 16
2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16
3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16
4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
7 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16
8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16
9 N -0.61 -15.80 3.39 -170.03 -0.58 -16.38 16
10 C 0.15 3.69 5.89 -2.53 -0.01 3.67 16
11 C -0.14 -2.54 6.53 -24.58 -0.16 -2.70 16
12 C -0.10 -1.62 2.93 -88.76 -0.26 -1.88 16
13 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
14 C -0.12 -1.43 4.73 -26.74 -0.13 -1.56 16
15 C 0.12 1.49 5.56 -4.04 -0.02 1.46 16
16 N -0.72 -7.57 5.51 -61.25 -0.34 -7.91 16
17 C 0.55 6.94 7.54 -12.33 -0.09 6.85 16
18 O -0.50 -8.26 11.40 5.32 0.06 -8.20 16
19 C -0.15 -1.47 5.85 -104.82 -0.61 -2.09 16
20 C -0.05 -0.29 9.63 -38.87 -0.37 -0.66 16
21 C -0.16 -0.71 10.10 -39.50 -0.40 -1.11 16
22 C 0.12 0.68 11.17 -17.47 -0.20 0.48 16
23 N -0.46 -4.13 10.24 -9.15 -0.09 -4.22 16
24 C 0.10 1.08 6.31 -82.17 -0.52 0.56 16
25 C 0.34 3.89 5.02 36.01 0.18 4.07 16
26 F -0.18 -2.58 14.97 2.25 0.03 -2.55 16
27 F -0.18 -2.52 15.10 2.25 0.03 -2.48 16
28 C 0.14 2.93 6.24 -3.04 -0.02 2.91 16
29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
30 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16
31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16
32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
33 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16
34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16
36 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16
37 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16
38 H 0.40 2.85 6.61 -40.82 -0.27 2.58 16
39 H 0.15 0.51 6.56 -52.49 -0.34 0.16 16
40 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16
41 H 0.17 0.38 8.06 -52.49 -0.42 -0.04 16
42 H 0.12 0.99 8.11 -51.93 -0.42 0.57 16
43 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16
44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
LS Contribution 364.46 15.07 5.49 5.49
Total: -1.00 -35.68 364.46 -8.61 -44.29
By element:
Atomic # 1 Polarization: 4.06 SS G_CDS: -5.90 Total: -1.84 kcal
Atomic # 6 Polarization: 5.96 SS G_CDS: -2.87 Total: 3.09 kcal
Atomic # 7 Polarization: -54.76 SS G_CDS: -0.45 Total: -55.21 kcal
Atomic # 8 Polarization: -8.26 SS G_CDS: 0.06 Total: -8.20 kcal
Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal
Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -35.68 -8.61 -44.29 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732053040.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.828 kcal
(2) G-P(sol) polarization free energy of solvation -35.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.503 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds