Wall clock time and date at job start Tue Mar 31 2020 23:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48501 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47345 * 300.00022 * 3 2 1 6 6 H 1.48503 * 109.46749 * 60.00280 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.49878 * 55.06273 * 12 11 10 14 14 C 1.53040 * 109.50138 * 175.16431 * 12 11 10 15 15 C 1.53036 * 109.53846 * 181.31640 * 14 12 11 16 16 C 1.53189 * 109.31381 * 298.63187 * 15 14 12 17 17 N 1.46920 * 108.77579 * 54.63900 * 16 15 14 18 18 C 1.34773 * 120.63347 * 126.36539 * 17 16 15 19 19 O 1.21556 * 120.00159 * 180.02562 * 18 17 16 20 20 C 1.47855 * 120.00302 * 0.02562 * 18 17 16 21 21 C 1.40117 * 120.95986 * 89.71186 * 20 18 17 22 22 F 1.35106 * 120.52207 * 0.02562 * 21 20 18 23 23 C 1.38435 * 118.95944 * 179.78182 * 21 20 18 24 24 N 1.31766 * 120.92637 * 0.51367 * 23 21 20 25 25 C 1.31770 * 122.14121 * 359.73878 * 24 23 21 26 26 C 1.38421 * 120.93160 * 359.97438 * 25 24 23 27 27 F 1.35104 * 120.51969 * 179.97438 * 26 25 24 28 28 C 1.46931 * 118.73768 * 306.39281 * 17 16 15 29 29 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 32 32 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 33 33 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 34 34 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 35 35 H 1.09002 * 109.45775 * 301.33889 * 14 12 11 36 36 H 1.08998 * 109.45770 * 61.29166 * 14 12 11 37 37 H 1.09004 * 109.49877 * 178.68269 * 15 14 12 38 38 H 1.09001 * 109.49912 * 58.58760 * 15 14 12 39 39 H 1.08994 * 109.58808 * 294.84899 * 16 15 14 40 40 H 1.09007 * 109.58667 * 174.42021 * 16 15 14 41 41 H 1.07996 * 119.53459 * 180.27556 * 23 21 20 42 42 H 1.07998 * 119.53025 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.58269 * 293.81818 * 28 17 16 44 44 H 1.09004 * 109.58651 * 173.39756 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 0.0008 13 1 2.5206 -6.1651 0.8431 14 6 0.8396 -7.3058 0.1230 15 6 1.6061 -8.6300 0.1568 16 6 2.3877 -8.7964 -1.1502 17 7 3.2359 -7.6132 -1.3479 18 6 4.5600 -7.7454 -1.5613 19 8 5.2511 -6.7586 -1.7231 20 6 5.1722 -9.0907 -1.5988 21 6 5.2688 -9.8056 -2.8000 22 9 4.8027 -9.2766 -3.9526 23 6 5.8538 -11.0601 -2.7883 24 7 6.3063 -11.5859 -1.6680 25 6 6.2314 -10.9515 -0.5155 26 6 5.6676 -9.6900 -0.4331 27 9 5.5946 -9.0473 0.7531 28 6 2.6132 -6.2830 -1.3080 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8895 32 1 2.6849 -3.7145 -0.8904 33 1 0.4376 -4.7618 0.8903 34 1 0.4371 -4.7622 -0.8897 35 1 0.2631 -7.1964 1.0416 36 1 0.1642 -7.2988 -0.7324 37 1 0.9024 -9.4550 0.2674 38 1 2.2996 -8.6276 0.9977 39 1 1.6910 -8.8899 -1.9832 40 1 3.0122 -9.6879 -1.0915 41 1 5.9371 -11.6173 -3.7097 42 1 6.6162 -11.4221 0.3771 43 1 1.9350 -6.1715 -2.1539 44 1 3.3865 -5.5160 -1.3535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732271564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:34 Heat of formation + Delta-G solvation = -79.121573 kcal Electronic energy + Delta-G solvation = -29578.645079 eV Core-core repulsion = 25167.216808 eV Total energy + Delta-G solvation = -4411.428270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.70359 -49.67414 -41.04435 -40.00728 -37.99182 -35.44132 -33.83899 -32.90247 -32.29998 -31.42160 -30.66716 -27.68083 -26.63146 -24.74400 -24.22197 -24.18807 -22.66153 -21.21151 -20.60960 -19.78362 -18.78595 -18.74237 -18.11776 -17.16364 -16.98555 -16.53559 -16.41410 -16.11800 -15.98667 -15.36895 -14.93504 -14.78977 -14.68321 -14.33849 -14.27830 -13.87210 -13.80973 -13.69967 -13.46550 -13.30563 -13.08012 -12.85579 -12.65280 -12.31707 -11.54066 -11.21957 -11.18707 -11.08821 -10.97855 -10.84870 -10.64070 -10.51705 -10.46140 -10.24931 -10.10598 -9.89714 -9.63946 -9.63409 -8.94750 -8.82881 -6.87594 -5.72879 -3.01080 -0.05724 0.00680 1.98709 2.44408 2.67342 2.94477 3.32174 3.46624 3.52459 3.55014 3.58322 3.67958 3.99093 4.25971 4.37250 4.59151 4.61922 4.66200 4.75841 4.78143 4.86044 5.01927 5.04799 5.08942 5.31391 5.49548 5.53054 5.57846 5.60977 5.71919 5.73192 5.81379 5.90723 5.97808 6.10178 6.16143 6.28995 6.41576 6.42305 6.88817 6.89793 6.91436 6.95296 7.65272 7.75721 8.46550 9.57577 10.15778 10.50485 11.50324 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.002458 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.606823 B =11388.310590 C =11864.401729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.096 4.096 13 H 0.076 0.924 14 C -0.115 4.115 15 C -0.134 4.134 16 C 0.105 3.895 17 N -0.594 5.594 18 C 0.562 3.438 19 O -0.507 6.507 20 C -0.146 4.146 21 C 0.110 3.890 22 F -0.109 7.109 23 C 0.069 3.931 24 N -0.419 5.419 25 C 0.069 3.931 26 C 0.112 3.888 27 F -0.107 7.107 28 C 0.114 3.886 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.017 0.983 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.184 0.816 42 H 0.184 0.816 43 H 0.076 0.924 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 -30.587 -2.924 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.018 4.018 17 N -0.327 5.327 18 C 0.346 3.654 19 O -0.381 6.381 20 C -0.159 4.159 21 C 0.088 3.912 22 F -0.087 7.087 23 C -0.090 4.090 24 N -0.126 5.126 25 C -0.090 4.090 26 C 0.089 3.911 27 F -0.085 7.085 28 C -0.007 4.007 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.201 0.799 42 H 0.201 0.799 43 H 0.094 0.906 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.997 -30.690 -3.041 31.860 hybrid contribution -0.365 1.990 0.048 2.023 sum 7.632 -28.701 -2.993 29.848 Atomic orbital electron populations 1.69668 1.05104 1.25471 1.58201 1.24741 0.95545 0.97701 1.03199 0.86113 0.78873 0.84094 0.77157 1.20508 1.21865 1.21878 1.19307 0.91115 0.84204 1.42118 0.91138 1.42375 1.05848 1.00107 1.89473 1.20715 0.93550 0.85603 0.97878 1.21730 0.98649 0.92736 1.02525 1.21478 0.97240 0.95367 0.97489 0.90583 1.21602 0.97694 0.93181 1.02826 1.21922 0.99474 0.98860 0.96941 1.21808 0.94040 0.87007 0.98897 1.48095 1.06185 1.08824 1.69569 1.17680 0.82503 0.87120 0.78086 1.90897 1.61064 1.37888 1.48250 1.20663 1.04521 0.97490 0.93222 1.18643 0.98097 0.93157 0.81321 1.91627 1.85587 1.86020 1.45447 1.23050 0.96019 0.91423 0.98492 1.67669 1.13469 1.33813 0.97641 1.23054 0.97944 0.90170 0.97807 1.18644 0.99490 0.92239 0.80724 1.91637 1.93575 1.80939 1.42395 1.21984 0.98001 0.82650 0.98092 0.93624 0.78351 0.96478 0.96211 0.91348 0.91659 0.91065 0.91454 0.90411 0.91270 0.90451 0.90918 0.79911 0.79892 0.90604 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.94 13.06 55.49 0.72 -28.22 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.73 -19.28 5.60 -59.91 -0.34 -19.62 16 10 C 0.15 3.12 6.02 -4.04 -0.02 3.10 16 11 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 12 C -0.10 -1.21 2.34 -90.50 -0.21 -1.43 16 13 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.11 5.17 -26.69 -0.14 -1.25 16 15 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 16 C 0.11 0.87 6.34 -3.72 -0.02 0.85 16 17 N -0.59 -7.05 2.97 -173.88 -0.52 -7.56 16 18 C 0.56 7.68 6.62 -12.33 -0.08 7.60 16 19 O -0.51 -9.08 16.52 5.32 0.09 -8.99 16 20 C -0.15 -1.51 3.67 -104.55 -0.38 -1.90 16 21 C 0.11 0.95 7.34 -38.80 -0.28 0.66 16 22 F -0.11 -1.06 16.92 2.25 0.04 -1.02 16 23 C 0.07 0.43 11.16 -17.51 -0.20 0.23 16 24 N -0.42 -2.89 10.33 -13.19 -0.14 -3.02 16 25 C 0.07 0.44 11.16 -17.51 -0.20 0.24 16 26 C 0.11 0.98 7.20 -38.81 -0.28 0.70 16 27 F -0.11 -1.09 16.92 2.25 0.04 -1.05 16 28 C 0.11 1.51 5.32 -3.71 -0.02 1.49 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.43 6.70 -51.93 -0.35 0.08 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.52 6.23 -51.93 -0.32 0.19 16 41 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.67 5.72 -51.93 -0.30 1.37 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -35.02 371.89 -7.79 -42.82 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.90 Total: 3.48 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.37 Total: -0.50 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.26 Total: -58.42 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.08 Total: -2.07 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.02 -7.79 -42.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732271564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.303 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds