Wall clock time and date at job start Tue Mar 31 2020 23:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48501 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47345 * 300.00022 * 3 2 1 6 6 H 1.48503 * 109.46749 * 60.00280 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.49878 * 55.06273 * 12 11 10 14 14 C 1.53040 * 109.50138 * 175.16431 * 12 11 10 15 15 C 1.53036 * 109.53846 * 181.31640 * 14 12 11 16 16 C 1.53189 * 109.31381 * 298.63187 * 15 14 12 17 17 N 1.46920 * 108.77579 * 54.63900 * 16 15 14 18 18 C 1.34773 * 120.63347 * 126.36539 * 17 16 15 19 19 O 1.21556 * 120.00159 * 180.02562 * 18 17 16 20 20 C 1.47855 * 120.00302 * 0.02562 * 18 17 16 21 21 C 1.40117 * 120.95986 * 89.71186 * 20 18 17 22 22 F 1.35106 * 120.52207 * 0.02562 * 21 20 18 23 23 C 1.38435 * 118.95944 * 179.78182 * 21 20 18 24 24 N 1.31766 * 120.92637 * 0.51367 * 23 21 20 25 25 C 1.31770 * 122.14121 * 359.73878 * 24 23 21 26 26 C 1.38421 * 120.93160 * 359.97438 * 25 24 23 27 27 F 1.35104 * 120.51969 * 179.97438 * 26 25 24 28 28 C 1.46931 * 118.73768 * 306.39281 * 17 16 15 29 29 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 32 32 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 33 33 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 34 34 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 35 35 H 1.09002 * 109.45775 * 301.33889 * 14 12 11 36 36 H 1.08998 * 109.45770 * 61.29166 * 14 12 11 37 37 H 1.09004 * 109.49877 * 178.68269 * 15 14 12 38 38 H 1.09001 * 109.49912 * 58.58760 * 15 14 12 39 39 H 1.08994 * 109.58808 * 294.84899 * 16 15 14 40 40 H 1.09007 * 109.58667 * 174.42021 * 16 15 14 41 41 H 1.07996 * 119.53459 * 180.27556 * 23 21 20 42 42 H 1.07998 * 119.53025 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.58269 * 293.81818 * 28 17 16 44 44 H 1.09004 * 109.58651 * 173.39756 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 0.0008 13 1 2.5206 -6.1651 0.8431 14 6 0.8396 -7.3058 0.1230 15 6 1.6061 -8.6300 0.1568 16 6 2.3877 -8.7964 -1.1502 17 7 3.2359 -7.6132 -1.3479 18 6 4.5600 -7.7454 -1.5613 19 8 5.2511 -6.7586 -1.7231 20 6 5.1722 -9.0907 -1.5988 21 6 5.2688 -9.8056 -2.8000 22 9 4.8027 -9.2766 -3.9526 23 6 5.8538 -11.0601 -2.7883 24 7 6.3063 -11.5859 -1.6680 25 6 6.2314 -10.9515 -0.5155 26 6 5.6676 -9.6900 -0.4331 27 9 5.5946 -9.0473 0.7531 28 6 2.6132 -6.2830 -1.3080 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8895 32 1 2.6849 -3.7145 -0.8904 33 1 0.4376 -4.7618 0.8903 34 1 0.4371 -4.7622 -0.8897 35 1 0.2631 -7.1964 1.0416 36 1 0.1642 -7.2988 -0.7324 37 1 0.9024 -9.4550 0.2674 38 1 2.2996 -8.6276 0.9977 39 1 1.6910 -8.8899 -1.9832 40 1 3.0122 -9.6879 -1.0915 41 1 5.9371 -11.6173 -3.7097 42 1 6.6162 -11.4221 0.3771 43 1 1.9350 -6.1715 -2.1539 44 1 3.3865 -5.5160 -1.3535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732271564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:33 Heat of formation + Delta-G solvation = -102.299439 kcal Electronic energy + Delta-G solvation = -29579.650146 eV Core-core repulsion = 25167.216808 eV Total energy + Delta-G solvation = -4412.433338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.39139 -50.36844 -41.87188 -40.76584 -39.07424 -37.05548 -35.24630 -33.89016 -33.38265 -32.36439 -31.98201 -29.18801 -27.53232 -25.98939 -25.42080 -24.81203 -24.11701 -22.37377 -21.83184 -20.69315 -19.48429 -19.39231 -19.21980 -18.86313 -18.00113 -17.24164 -17.20613 -16.88458 -16.73552 -16.68663 -16.30631 -15.93511 -15.55657 -15.47674 -15.33581 -15.11133 -14.87739 -14.80260 -14.42721 -14.37010 -14.35288 -14.06699 -13.55374 -13.36259 -13.04187 -12.89383 -12.65438 -12.40294 -12.13426 -12.05426 -12.00928 -11.90896 -11.76463 -11.58117 -11.29065 -11.16512 -10.97904 -10.91494 -10.20076 -9.93274 -9.05616 -8.00639 -5.29941 -0.73022 -0.54778 0.98857 1.43335 1.44407 1.54835 1.55185 2.10273 2.31598 2.51683 2.71316 2.83288 3.14603 3.32398 3.40219 3.53210 3.65897 3.74407 3.78249 3.94418 3.95006 4.16708 4.18654 4.23554 4.34393 4.37225 4.45279 4.57622 4.59191 4.62645 4.73718 4.76277 4.83052 4.97640 5.02611 5.16908 5.19397 5.25187 5.28241 5.34469 5.43307 5.45602 5.99645 6.22698 6.35705 6.64752 7.28544 8.03174 8.28457 9.22994 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.002458 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.606823 B =11388.310590 C =11864.401729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.251 4.251 8 H 0.068 0.932 9 N -0.746 5.746 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.085 4.085 13 H 0.063 0.937 14 C -0.111 4.111 15 C -0.127 4.127 16 C 0.099 3.901 17 N -0.590 5.590 18 C 0.554 3.446 19 O -0.567 6.567 20 C -0.161 4.161 21 C 0.100 3.900 22 F -0.119 7.119 23 C 0.092 3.908 24 N -0.423 5.423 25 C 0.091 3.909 26 C 0.098 3.902 27 F -0.120 7.120 28 C 0.115 3.885 29 H 0.254 0.746 30 H 0.376 0.624 31 H 0.009 0.991 32 H 0.013 0.987 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.218 0.782 42 H 0.216 0.784 43 H 0.084 0.916 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -33.590 -2.946 34.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.389 5.389 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.104 4.104 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.164 4.164 16 C -0.022 4.022 17 N -0.321 5.321 18 C 0.340 3.660 19 O -0.446 6.446 20 C -0.173 4.173 21 C 0.077 3.923 22 F -0.098 7.098 23 C -0.067 4.067 24 N -0.130 5.130 25 C -0.067 4.067 26 C 0.076 3.924 27 F -0.099 7.099 28 C -0.007 4.007 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.027 0.973 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.234 0.766 42 H 0.233 0.767 43 H 0.103 0.897 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.035 -33.757 -3.053 34.834 hybrid contribution -0.349 2.848 0.041 2.869 sum 7.687 -30.909 -3.012 31.993 Atomic orbital electron populations 1.69807 1.06473 1.26203 1.59267 1.25579 0.96520 1.01076 1.03382 0.85068 0.78003 0.79632 0.77032 1.19548 1.21561 1.21453 1.19638 0.91302 0.85655 1.41676 0.91403 1.42570 1.05695 1.01187 1.89408 1.20851 0.94418 0.85577 0.96877 1.21587 0.97565 0.92200 1.02816 1.21347 0.97415 0.95197 0.96478 0.91890 1.21583 0.97033 0.92448 1.03773 1.21906 0.99612 0.98770 0.96148 1.22136 0.94132 0.85946 0.99995 1.48218 1.06227 1.09317 1.68332 1.18260 0.82739 0.87961 0.77002 1.90853 1.62459 1.40153 1.51096 1.20546 1.05760 0.96120 0.94901 1.18808 0.99166 0.93951 0.80347 1.91599 1.85913 1.86366 1.45888 1.23548 0.93481 0.90117 0.99507 1.67833 1.13618 1.33662 0.97876 1.23526 0.95721 0.88699 0.98755 1.18827 1.00621 0.93129 0.79821 1.91603 1.93831 1.81413 1.43019 1.21806 0.97067 0.82986 0.98880 0.93762 0.79175 0.97340 0.96947 0.91046 0.91230 0.90272 0.90283 0.87104 0.92034 0.88646 0.89310 0.76589 0.76711 0.89741 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.69 13.06 21.65 0.28 -60.40 16 2 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 3 Si 0.97 48.07 29.55 68.60 2.03 50.09 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -40.35 5.60 -343.46 -1.92 -42.28 16 10 C 0.15 6.47 6.02 86.38 0.52 6.99 16 11 C -0.10 -3.29 4.80 30.59 0.15 -3.15 16 12 C -0.08 -2.14 2.34 -10.72 -0.03 -2.17 16 13 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 14 C -0.11 -1.89 5.17 30.62 0.16 -1.74 16 15 C -0.13 -1.63 6.08 30.67 0.19 -1.45 16 16 C 0.10 1.45 6.34 86.36 0.55 1.99 16 17 N -0.59 -14.12 2.97 -822.30 -2.44 -16.57 16 18 C 0.55 15.80 6.62 86.79 0.57 16.38 16 19 O -0.57 -21.95 16.52 -3.89 -0.06 -22.02 16 20 C -0.16 -3.27 3.67 -19.82 -0.07 -3.35 16 21 C 0.10 1.58 7.34 22.77 0.17 1.75 16 22 F -0.12 -2.25 16.92 44.97 0.76 -1.49 16 23 C 0.09 0.88 11.16 84.75 0.95 1.82 16 24 N -0.42 -4.43 10.33 -195.63 -2.02 -6.45 16 25 C 0.09 0.91 11.16 84.75 0.95 1.85 16 26 C 0.10 1.61 7.20 22.77 0.16 1.78 16 27 F -0.12 -2.41 16.92 44.97 0.76 -1.65 16 28 C 0.11 3.17 5.32 86.36 0.46 3.63 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.38 21.04 7.67 -92.70 -0.71 20.33 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.01 0.57 6.70 -2.39 -0.02 0.55 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.05 6.23 -2.38 -0.01 1.04 16 41 H 0.22 0.53 8.06 -2.91 -0.02 0.51 16 42 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.07 2.32 5.72 -2.38 -0.01 2.30 16 Total: -1.00 -79.21 371.89 3.73 -75.47 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.33 Total: 18.98 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.02 Total: 6.31 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -6.11 Total: -125.69 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 1.52 Total: -3.14 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.09 kcal Total: -79.21 3.73 -75.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732271564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.828 kcal (2) G-P(sol) polarization free energy of solvation -79.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds