Wall clock time and date at job start Tue Mar 31 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99511 * 2 1 4 4 H 1.48504 * 109.47100 * 239.99747 * 3 2 1 5 5 H 1.48492 * 109.47642 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47237 * 120.00183 * 3 2 1 7 7 C 1.38806 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00103 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47055 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47065 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.49446 * 304.93486 * 12 11 10 14 14 C 1.53041 * 109.49939 * 184.83740 * 12 11 10 15 15 C 1.53032 * 109.53930 * 178.68197 * 14 12 11 16 16 C 1.52765 * 109.38265 * 61.23720 * 15 14 12 17 17 N 1.46929 * 109.01003 * 305.58906 * 16 15 14 18 18 C 1.34777 * 120.63090 * 233.58162 * 17 16 15 19 19 O 1.21538 * 120.00080 * 179.97438 * 18 17 16 20 20 C 1.47856 * 119.99815 * 359.72330 * 18 17 16 21 21 C 1.40122 * 120.95940 * 89.71876 * 20 18 17 22 22 F 1.35103 * 120.52192 * 0.02562 * 21 20 18 23 23 C 1.38429 * 118.95577 * 179.77715 * 21 20 18 24 24 N 1.31771 * 120.93246 * 0.50560 * 23 21 20 25 25 C 1.31765 * 122.13461 * 359.74251 * 24 23 21 26 26 C 1.38424 * 120.93836 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.52689 * 180.02562 * 26 25 24 28 28 C 1.46923 * 118.73572 * 53.30988 * 17 16 15 29 29 H 0.97004 * 120.00634 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00371 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47226 * 59.99843 * 10 9 7 32 32 H 1.09004 * 109.46847 * 299.99710 * 10 9 7 33 33 H 1.08997 * 109.47417 * 59.99733 * 11 10 9 34 34 H 1.09004 * 109.46871 * 299.99468 * 11 10 9 35 35 H 1.09004 * 109.45546 * 298.70098 * 14 12 11 36 36 H 1.08996 * 109.45855 * 58.65902 * 14 12 11 37 37 H 1.08992 * 109.50046 * 181.31141 * 15 14 12 38 38 H 1.09003 * 109.49720 * 301.41712 * 15 14 12 39 39 H 1.09003 * 109.50995 * 185.70481 * 16 15 14 40 40 H 1.09001 * 109.43183 * 65.42833 * 16 15 14 41 41 H 1.08000 * 119.53743 * 180.22507 * 23 21 20 42 42 H 1.08006 * 119.52995 * 179.97438 * 25 24 23 43 43 H 1.08998 * 109.58754 * 66.43184 * 28 17 16 44 44 H 1.09007 * 109.58277 * 186.85651 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8196 0.0008 12 6 1.8291 -6.1447 0.0013 13 1 2.5212 -6.1654 -0.8405 14 6 0.8397 -7.3059 -0.1212 15 6 1.6061 -8.6300 -0.1538 16 6 2.3878 -8.7956 1.1482 17 7 3.2349 -7.6125 1.3516 18 6 4.5589 -7.7446 1.5662 19 8 5.2490 -6.7581 1.7326 20 6 5.1709 -9.0900 1.6046 21 6 5.6614 -9.6924 0.4385 22 9 5.5848 -9.0523 -0.7489 23 6 6.2306 -10.9514 0.5229 24 7 6.3050 -11.5851 1.6758 25 6 5.8521 -11.0586 2.7956 26 6 5.2724 -9.8017 2.8074 27 9 4.8112 -9.2695 3.9604 28 6 2.6122 -6.2824 1.3107 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6842 -3.7141 0.8921 32 1 2.6855 -3.7148 -0.8879 33 1 0.4383 -4.7621 -0.8899 34 1 0.4364 -4.7617 0.8901 35 1 0.1636 -7.2985 0.7338 36 1 0.2639 -7.1968 -1.0402 37 1 0.9025 -9.4550 -0.2645 38 1 2.3004 -8.6279 -0.9942 39 1 3.0129 -9.6865 1.0868 40 1 1.6901 -8.8930 1.9801 41 1 6.6150 -11.4229 -0.3695 42 1 5.9343 -11.6156 3.7172 43 1 1.9333 -6.1706 2.1561 44 1 3.3855 -5.5154 1.3564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732271565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:38 Heat of formation + Delta-G solvation = -78.954899 kcal Electronic energy + Delta-G solvation = -29579.337215 eV Core-core repulsion = 25167.916172 eV Total energy + Delta-G solvation = -4411.421043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -49.70344 -49.67473 -41.04650 -40.01069 -38.00001 -35.44266 -33.83630 -32.90081 -32.31575 -31.42085 -30.67082 -27.67966 -26.63426 -24.74455 -24.22023 -24.18371 -22.65640 -21.21281 -20.60688 -19.78098 -18.78495 -18.74214 -18.11737 -17.16433 -16.98137 -16.53530 -16.41361 -16.11731 -15.98637 -15.36842 -14.93705 -14.79323 -14.68460 -14.33803 -14.28004 -13.87560 -13.81010 -13.69981 -13.46550 -13.30711 -13.07499 -12.85738 -12.65113 -12.31523 -11.53323 -11.22065 -11.18644 -11.08096 -10.97727 -10.82188 -10.63983 -10.51647 -10.45806 -10.27538 -10.11411 -9.92443 -9.63880 -9.62436 -8.94801 -8.81633 -6.87442 -5.72285 -3.00610 -0.05676 0.00741 1.98851 2.44399 2.67390 2.94554 3.32218 3.48201 3.51777 3.53515 3.58367 3.67971 3.99149 4.26007 4.37182 4.59805 4.62184 4.66197 4.76004 4.78207 4.86115 5.02264 5.04847 5.09232 5.31527 5.49776 5.53101 5.58027 5.61071 5.72034 5.73273 5.81422 5.90924 5.97977 6.10323 6.16259 6.29148 6.41895 6.42420 6.88999 6.89832 6.91640 6.95384 7.65339 7.74986 8.47119 9.57968 10.16180 10.50990 11.50754 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.002458 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.761588 B =11386.936373 C =11865.195369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.096 4.096 13 H 0.076 0.924 14 C -0.115 4.115 15 C -0.134 4.134 16 C 0.106 3.894 17 N -0.594 5.594 18 C 0.562 3.438 19 O -0.506 6.506 20 C -0.146 4.146 21 C 0.111 3.889 22 F -0.107 7.107 23 C 0.069 3.931 24 N -0.419 5.419 25 C 0.069 3.931 26 C 0.111 3.889 27 F -0.109 7.109 28 C 0.114 3.886 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.020 0.980 32 H 0.017 0.983 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.184 0.816 42 H 0.184 0.816 43 H 0.076 0.924 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 -30.531 2.928 31.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.017 4.017 17 N -0.327 5.327 18 C 0.346 3.654 19 O -0.381 6.381 20 C -0.159 4.159 21 C 0.089 3.911 22 F -0.085 7.085 23 C -0.090 4.090 24 N -0.126 5.126 25 C -0.090 4.090 26 C 0.088 3.912 27 F -0.087 7.087 28 C -0.007 4.007 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.201 0.799 42 H 0.201 0.799 43 H 0.094 0.906 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.924 -30.624 3.050 31.779 hybrid contribution -0.337 1.981 -0.057 2.011 sum 7.587 -28.643 2.994 29.781 Atomic orbital electron populations 1.69650 1.05102 1.25703 1.58024 1.24734 0.95539 0.97685 1.03146 0.86257 0.78511 0.83488 0.77907 1.21276 1.21684 1.21237 1.19214 0.91056 0.84232 1.42418 0.91248 1.42356 1.05830 1.00080 1.89509 1.20715 0.93552 0.85609 0.97869 1.21731 0.98650 0.92732 1.02523 1.21481 0.97250 0.95374 0.97482 0.90587 1.21601 0.97695 0.93169 1.02831 1.21849 0.99483 0.98895 0.97014 1.21717 0.94071 0.87020 0.98921 1.48095 1.06218 1.08824 1.69530 1.17675 0.82483 0.87116 0.78101 1.90892 1.61088 1.37901 1.48203 1.20666 1.04561 0.97498 0.93177 1.18647 0.99507 0.92279 0.80688 1.91636 1.93560 1.81055 1.42296 1.23057 0.97899 0.90227 0.97793 1.67672 1.13455 1.33806 0.97654 1.23048 0.96068 0.91375 0.98504 1.18637 0.98134 0.93126 0.81289 1.91625 1.85742 1.85894 1.45410 1.21982 0.98007 0.82653 0.98086 0.93520 0.78349 0.96221 0.96490 0.91350 0.91659 0.91451 0.91062 0.90372 0.91293 0.90928 0.90481 0.79894 0.79910 0.90593 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.95 13.06 55.49 0.72 -28.23 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -19.30 5.60 -59.91 -0.34 -19.63 16 10 C 0.15 3.13 6.02 -4.04 -0.02 3.10 16 11 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 12 C -0.10 -1.22 2.34 -90.50 -0.21 -1.43 16 13 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.11 5.17 -26.69 -0.14 -1.25 16 15 C -0.13 -1.05 6.06 -26.84 -0.16 -1.21 16 16 C 0.11 0.88 6.31 -3.93 -0.02 0.85 16 17 N -0.59 -7.06 2.98 -174.14 -0.52 -7.57 16 18 C 0.56 7.69 6.62 -12.32 -0.08 7.61 16 19 O -0.51 -9.08 16.52 5.33 0.09 -9.00 16 20 C -0.15 -1.52 3.69 -104.55 -0.39 -1.90 16 21 C 0.11 0.97 7.18 -38.80 -0.28 0.70 16 22 F -0.11 -1.09 16.92 2.25 0.04 -1.05 16 23 C 0.07 0.44 11.16 -17.51 -0.20 0.24 16 24 N -0.42 -2.89 10.33 -13.18 -0.14 -3.02 16 25 C 0.07 0.43 11.16 -17.51 -0.20 0.23 16 26 C 0.11 0.95 7.34 -38.81 -0.28 0.67 16 27 F -0.11 -1.06 16.92 2.25 0.04 -1.02 16 28 C 0.11 1.52 5.33 -3.71 -0.02 1.50 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 31 H 0.02 0.42 6.70 -51.93 -0.35 0.08 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.52 6.21 -51.93 -0.32 0.19 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.18 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.67 5.72 -51.92 -0.30 1.37 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -34.99 371.83 -7.80 -42.79 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.90 Total: 3.57 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.38 Total: -0.53 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.27 Total: -58.46 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.08 Total: -2.07 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.99 -7.80 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732271565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.168 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds