Wall clock time and date at job start Tue Mar 31 2020 23:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99511 * 2 1 4 4 H 1.48504 * 109.47100 * 239.99747 * 3 2 1 5 5 H 1.48492 * 109.47642 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47237 * 120.00183 * 3 2 1 7 7 C 1.38806 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00103 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47055 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47065 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.49446 * 304.93486 * 12 11 10 14 14 C 1.53041 * 109.49939 * 184.83740 * 12 11 10 15 15 C 1.53032 * 109.53930 * 178.68197 * 14 12 11 16 16 C 1.52765 * 109.38265 * 61.23720 * 15 14 12 17 17 N 1.46929 * 109.01003 * 305.58906 * 16 15 14 18 18 C 1.34777 * 120.63090 * 233.58162 * 17 16 15 19 19 O 1.21538 * 120.00080 * 179.97438 * 18 17 16 20 20 C 1.47856 * 119.99815 * 359.72330 * 18 17 16 21 21 C 1.40122 * 120.95940 * 89.71876 * 20 18 17 22 22 F 1.35103 * 120.52192 * 0.02562 * 21 20 18 23 23 C 1.38429 * 118.95577 * 179.77715 * 21 20 18 24 24 N 1.31771 * 120.93246 * 0.50560 * 23 21 20 25 25 C 1.31765 * 122.13461 * 359.74251 * 24 23 21 26 26 C 1.38424 * 120.93836 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.52689 * 180.02562 * 26 25 24 28 28 C 1.46923 * 118.73572 * 53.30988 * 17 16 15 29 29 H 0.97004 * 120.00634 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00371 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47226 * 59.99843 * 10 9 7 32 32 H 1.09004 * 109.46847 * 299.99710 * 10 9 7 33 33 H 1.08997 * 109.47417 * 59.99733 * 11 10 9 34 34 H 1.09004 * 109.46871 * 299.99468 * 11 10 9 35 35 H 1.09004 * 109.45546 * 298.70098 * 14 12 11 36 36 H 1.08996 * 109.45855 * 58.65902 * 14 12 11 37 37 H 1.08992 * 109.50046 * 181.31141 * 15 14 12 38 38 H 1.09003 * 109.49720 * 301.41712 * 15 14 12 39 39 H 1.09003 * 109.50995 * 185.70481 * 16 15 14 40 40 H 1.09001 * 109.43183 * 65.42833 * 16 15 14 41 41 H 1.08000 * 119.53743 * 180.22507 * 23 21 20 42 42 H 1.08006 * 119.52995 * 179.97438 * 25 24 23 43 43 H 1.08998 * 109.58754 * 66.43184 * 28 17 16 44 44 H 1.09007 * 109.58277 * 186.85651 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8196 0.0008 12 6 1.8291 -6.1447 0.0013 13 1 2.5212 -6.1654 -0.8405 14 6 0.8397 -7.3059 -0.1212 15 6 1.6061 -8.6300 -0.1538 16 6 2.3878 -8.7956 1.1482 17 7 3.2349 -7.6125 1.3516 18 6 4.5589 -7.7446 1.5662 19 8 5.2490 -6.7581 1.7326 20 6 5.1709 -9.0900 1.6046 21 6 5.6614 -9.6924 0.4385 22 9 5.5848 -9.0523 -0.7489 23 6 6.2306 -10.9514 0.5229 24 7 6.3050 -11.5851 1.6758 25 6 5.8521 -11.0586 2.7956 26 6 5.2724 -9.8017 2.8074 27 9 4.8112 -9.2695 3.9604 28 6 2.6122 -6.2824 1.3107 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6842 -3.7141 0.8921 32 1 2.6855 -3.7148 -0.8879 33 1 0.4383 -4.7621 -0.8899 34 1 0.4364 -4.7617 0.8901 35 1 0.1636 -7.2985 0.7338 36 1 0.2639 -7.1968 -1.0402 37 1 0.9025 -9.4550 -0.2645 38 1 2.3004 -8.6279 -0.9942 39 1 3.0129 -9.6865 1.0868 40 1 1.6901 -8.8930 1.9801 41 1 6.6150 -11.4229 -0.3695 42 1 5.9343 -11.6156 3.7172 43 1 1.9333 -6.1706 2.1561 44 1 3.3855 -5.5154 1.3564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732271565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:37 Heat of formation + Delta-G solvation = -102.111690 kcal Electronic energy + Delta-G solvation = -29580.341369 eV Core-core repulsion = 25167.916172 eV Total energy + Delta-G solvation = -4412.425196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.39235 -50.36939 -41.87593 -40.76855 -39.08210 -37.05701 -35.24506 -33.89199 -33.39061 -32.37562 -31.98190 -29.18890 -27.53589 -25.98488 -25.42269 -24.81204 -24.11182 -22.37633 -21.83225 -20.69062 -19.48379 -19.39267 -19.21734 -18.86212 -18.00233 -17.24055 -17.20783 -16.88418 -16.73341 -16.68712 -16.30741 -15.93601 -15.55867 -15.47785 -15.33768 -15.11212 -14.87721 -14.80433 -14.43021 -14.37171 -14.35817 -14.06665 -13.55180 -13.36252 -13.02943 -12.86012 -12.65721 -12.39694 -12.20982 -12.05431 -12.00417 -11.90149 -11.76368 -11.57972 -11.29079 -11.16497 -10.96452 -10.91371 -10.20079 -9.93465 -9.05548 -8.00098 -5.29574 -0.73051 -0.54780 0.98907 1.43135 1.46690 1.53086 1.54869 2.10254 2.31612 2.52059 2.71294 2.83206 3.14604 3.32583 3.40209 3.53178 3.65819 3.74319 3.78122 3.94562 3.95613 4.16716 4.18679 4.23572 4.34410 4.37488 4.45296 4.57591 4.59292 4.62666 4.73736 4.76351 4.82988 4.97736 5.02457 5.16915 5.19385 5.25224 5.28188 5.34493 5.42956 5.45457 5.99612 6.22815 6.35679 6.64718 7.28733 8.03475 8.28856 9.23081 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.002458 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.761588 B =11386.936373 C =11865.195369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.746 5.746 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.085 4.085 13 H 0.063 0.937 14 C -0.111 4.111 15 C -0.127 4.127 16 C 0.099 3.901 17 N -0.590 5.590 18 C 0.554 3.446 19 O -0.566 6.566 20 C -0.161 4.161 21 C 0.098 3.902 22 F -0.120 7.120 23 C 0.091 3.909 24 N -0.423 5.423 25 C 0.092 3.908 26 C 0.100 3.900 27 F -0.119 7.119 28 C 0.115 3.885 29 H 0.254 0.746 30 H 0.376 0.624 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.216 0.784 42 H 0.218 0.782 43 H 0.084 0.916 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -33.526 2.938 34.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.388 5.388 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.104 4.104 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.165 4.165 16 C -0.022 4.022 17 N -0.321 5.321 18 C 0.341 3.659 19 O -0.445 6.445 20 C -0.173 4.173 21 C 0.076 3.924 22 F -0.099 7.099 23 C -0.067 4.067 24 N -0.130 5.130 25 C -0.067 4.067 26 C 0.077 3.923 27 F -0.098 7.098 28 C -0.007 4.007 29 H 0.063 0.937 30 H 0.208 0.792 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.233 0.767 42 H 0.234 0.766 43 H 0.103 0.897 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.973 -33.685 3.051 34.750 hybrid contribution -0.321 2.836 -0.046 2.854 sum 7.651 -30.850 3.004 31.926 Atomic orbital electron populations 1.69795 1.06470 1.26359 1.59089 1.25577 0.96516 1.01078 1.03302 0.85206 0.77308 0.79053 0.78174 1.20403 1.21430 1.20539 1.19572 0.91313 0.85688 1.41999 0.91408 1.42553 1.05678 1.01163 1.89451 1.20851 0.94419 0.85586 0.96862 1.21587 0.97566 0.92200 1.02812 1.21349 0.97425 0.95202 0.96469 0.91890 1.21582 0.97035 0.92439 1.03777 1.21834 0.99621 0.98805 0.96218 1.22045 0.94171 0.85957 1.00024 1.48218 1.06259 1.09314 1.68300 1.18255 0.82717 0.87959 0.77017 1.90848 1.62483 1.40166 1.51046 1.20550 1.05803 0.96125 0.94857 1.18827 1.00631 0.93163 0.79780 1.91603 1.93815 1.81526 1.42914 1.23530 0.95676 0.88760 0.98741 1.67836 1.13604 1.33655 0.97888 1.23545 0.93527 0.90065 0.99521 1.18805 0.99213 0.93930 0.80313 1.91597 1.86069 1.86246 1.45859 1.21804 0.97070 0.82991 0.98872 0.93742 0.79178 0.96965 0.97353 0.91046 0.91235 0.90283 0.90266 0.87055 0.92055 0.89316 0.88671 0.76709 0.76588 0.89742 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.69 13.06 21.65 0.28 -60.40 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 48.03 29.55 68.60 2.03 50.06 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.25 -15.16 9.99 84.03 0.84 -14.32 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.75 -40.40 5.60 -343.45 -1.92 -42.32 16 10 C 0.15 6.48 6.02 86.38 0.52 7.00 16 11 C -0.10 -3.30 4.80 30.60 0.15 -3.15 16 12 C -0.08 -2.15 2.34 -10.71 -0.03 -2.17 16 13 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 14 C -0.11 -1.90 5.17 30.62 0.16 -1.74 16 15 C -0.13 -1.64 6.06 30.53 0.19 -1.46 16 16 C 0.10 1.45 6.31 86.22 0.54 2.00 16 17 N -0.59 -14.14 2.98 -823.13 -2.45 -16.59 16 18 C 0.55 15.82 6.62 86.79 0.57 16.39 16 19 O -0.57 -21.96 16.52 -3.84 -0.06 -22.02 16 20 C -0.16 -3.28 3.69 -19.82 -0.07 -3.35 16 21 C 0.10 1.61 7.18 22.77 0.16 1.77 16 22 F -0.12 -2.40 16.92 44.97 0.76 -1.64 16 23 C 0.09 0.91 11.16 84.75 0.95 1.85 16 24 N -0.42 -4.43 10.33 -195.62 -2.02 -6.45 16 25 C 0.09 0.88 11.16 84.75 0.95 1.83 16 26 C 0.10 1.59 7.34 22.77 0.17 1.76 16 27 F -0.12 -2.26 16.92 44.97 0.76 -1.50 16 28 C 0.11 3.18 5.33 86.36 0.46 3.64 16 29 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.38 21.07 7.67 -92.71 -0.71 20.36 16 31 H 0.01 0.56 6.70 -2.39 -0.02 0.54 16 32 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 1.06 6.21 -2.39 -0.01 1.04 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 42 H 0.22 0.53 8.06 -2.91 -0.02 0.51 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.32 5.72 -2.38 -0.01 2.31 16 Total: -1.00 -79.16 371.83 3.72 -75.44 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.33 Total: 19.26 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.02 Total: 6.18 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -6.11 Total: -125.78 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 1.52 Total: -3.14 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -79.16 3.72 -75.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732271565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.672 kcal (2) G-P(sol) polarization free energy of solvation -79.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds