Wall clock time and date at job start Tue Mar 31 2020 23:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47233 * 240.00285 * 3 2 1 5 5 H 1.48504 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46940 * 120.00217 * 3 2 1 7 7 C 1.38816 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00131 * 174.60667 * 9 7 2 11 11 C 1.53005 * 110.01356 * 301.46125 * 10 9 7 12 12 N 1.46502 * 109.47057 * 303.90115 * 11 10 9 13 13 C 1.34771 * 120.00222 * 175.13016 * 12 11 10 14 14 O 1.21558 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.47837 * 120.00460 * 179.97438 * 13 12 11 16 16 C 1.40020 * 120.56587 * 180.02562 * 15 13 12 17 17 C 1.38355 * 118.28997 * 179.73131 * 16 15 13 18 18 C 1.38346 * 119.30332 * 0.50984 * 17 16 15 19 19 C 1.50702 * 119.45874 * 179.75203 * 18 17 16 20 20 F 1.39903 * 109.46994 * 299.72419 * 19 18 17 21 21 F 1.39899 * 109.47607 * 59.72601 * 19 18 17 22 22 N 1.31920 * 121.08131 * 359.47437 * 18 17 16 23 23 C 1.31699 * 121.88165 * 0.25339 * 22 18 17 24 24 C 1.54265 * 110.07432 * 62.87237 * 10 9 7 25 25 C 1.54889 * 104.19239 * 95.69866 * 24 10 9 26 26 C 1.54888 * 102.74984 * 37.94437 * 25 24 10 27 27 C 1.53873 * 110.03295 * 180.02562 * 10 9 7 28 28 H 0.96998 * 120.00001 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00018 * 354.60521 * 9 7 2 30 30 H 1.08997 * 109.46693 * 183.90692 * 11 10 9 31 31 H 1.08995 * 109.47484 * 63.90085 * 11 10 9 32 32 H 0.97007 * 119.99845 * 355.13008 * 12 11 10 33 33 H 1.08001 * 120.84887 * 359.97438 * 16 15 13 34 34 H 1.08006 * 120.34764 * 180.26470 * 17 16 15 35 35 H 1.09004 * 109.47262 * 179.73171 * 19 18 17 36 36 H 1.07998 * 119.71721 * 180.02562 * 23 22 18 37 37 H 1.08998 * 110.49026 * 214.37542 * 24 10 9 38 38 H 1.09004 * 110.48727 * 337.02625 * 24 10 9 39 39 H 1.09000 * 110.76125 * 279.62899 * 25 24 10 40 40 H 1.09004 * 110.75694 * 156.25785 * 25 24 10 41 41 H 1.08999 * 110.48575 * 203.38038 * 26 25 24 42 42 H 1.08999 * 110.48779 * 80.73345 * 26 25 24 43 43 H 1.08997 * 110.03045 * 359.94704 * 27 10 9 44 44 H 1.08998 * 110.03318 * 121.37936 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0531 -3.6540 -0.1214 11 6 2.8623 -3.6720 -1.4199 12 7 1.9681 -3.4341 -2.5558 13 6 2.4755 -3.3084 -3.7980 14 8 3.6750 -3.3930 -3.9760 15 6 1.5732 -3.0689 -4.9443 16 6 2.0876 -2.9371 -6.2399 17 6 1.2002 -2.7195 -7.2788 18 6 -0.1531 -2.6293 -7.0057 19 6 -1.1223 -2.3868 -8.1339 20 9 -0.8191 -1.1708 -8.7558 21 9 -1.0223 -3.4251 -9.0661 22 7 -0.6094 -2.7576 -5.7746 23 6 0.1945 -2.9710 -4.7535 24 6 2.9915 -3.8419 1.0885 25 6 2.1742 -4.7176 2.0705 26 6 1.4382 -5.6975 1.1234 27 6 1.0656 -4.8338 -0.0982 28 1 -0.4850 0.8400 0.0004 29 1 0.3587 -2.3900 0.0770 30 1 3.3442 -4.6429 -1.5341 31 1 3.6218 -2.8910 -1.3856 32 1 1.0109 -3.3670 -2.4138 33 1 3.1495 -3.0074 -6.4240 34 1 1.5604 -2.6172 -8.2919 35 1 -2.1376 -2.3495 -7.7390 36 1 -0.2169 -3.0710 -3.7599 37 1 3.9040 -4.3565 0.7874 38 1 3.2272 -2.8790 1.5417 39 1 1.4611 -4.1103 2.6280 40 1 2.8353 -5.2583 2.7479 41 1 0.5405 -6.0887 1.6020 42 1 2.0999 -6.5117 0.8278 43 1 0.0451 -4.4646 0.0032 44 1 1.1622 -5.4196 -1.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732394683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:46 Heat of formation + Delta-G solvation = -95.275664 kcal Electronic energy + Delta-G solvation = -29533.579921 eV Core-core repulsion = 25121.451157 eV Total energy + Delta-G solvation = -4412.128764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.30469 -47.28905 -40.73854 -39.23622 -38.10249 -34.32298 -33.46261 -32.96708 -32.30833 -30.67670 -28.40053 -28.24388 -27.04765 -24.63775 -24.03017 -23.42507 -22.69296 -20.75269 -19.99379 -18.88408 -18.20047 -17.86476 -17.54268 -17.46289 -17.00318 -16.41899 -15.71672 -15.18044 -15.00871 -14.92786 -14.79354 -14.36457 -14.28090 -14.01968 -13.77554 -13.65531 -13.38770 -13.37890 -13.33068 -12.82204 -12.69268 -12.66013 -12.03722 -11.56628 -11.50552 -11.18175 -10.82574 -10.79433 -10.70210 -10.58948 -10.31995 -10.22557 -10.17658 -10.15686 -9.94127 -9.71191 -9.60098 -9.52314 -8.97296 -8.60480 -7.08416 -5.86605 -3.16140 0.28055 0.94826 2.81010 3.02459 3.38252 3.39492 3.44230 3.45868 3.67183 3.87025 4.12968 4.46016 4.51363 4.59775 4.72816 4.75357 4.85513 5.00607 5.03893 5.08717 5.16795 5.30473 5.49260 5.60233 5.64624 5.70805 5.85346 5.86792 5.88216 6.02992 6.09888 6.17924 6.19501 6.24565 6.35708 6.47826 6.50486 6.70350 6.74739 6.85199 6.98912 7.43871 7.64851 7.81816 8.31778 8.43237 9.43958 9.96559 10.31906 11.35107 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.003377 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.189349 B = 8289.511950 C = 9643.804890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.711 5.711 10 C 0.188 3.812 11 C 0.118 3.882 12 N -0.688 5.688 13 C 0.556 3.444 14 O -0.545 6.545 15 C -0.154 4.154 16 C -0.020 4.020 17 C -0.142 4.142 18 C 0.061 3.939 19 C 0.324 3.676 20 F -0.192 7.192 21 F -0.194 7.194 22 N -0.458 5.458 23 C 0.142 3.858 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.127 4.127 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.402 0.598 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.172 0.828 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 -10.552 -9.925 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.353 5.353 10 C 0.096 3.904 11 C -0.007 4.007 12 N -0.337 5.337 13 C 0.340 3.660 14 O -0.424 6.424 15 C -0.159 4.159 16 C -0.047 4.047 17 C -0.162 4.162 18 C -0.077 4.077 19 C 0.270 3.730 20 F -0.173 7.173 21 F -0.175 7.175 22 N -0.167 5.167 23 C -0.017 4.017 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.165 4.165 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.238 0.762 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.189 0.811 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.210 -10.382 -9.922 14.412 hybrid contribution 0.691 1.170 -0.118 1.364 sum -0.519 -9.213 -10.039 13.636 Atomic orbital electron populations 1.69623 1.04985 1.25853 1.57289 1.24669 0.95396 0.97471 1.02630 0.86385 0.78696 0.83899 0.77929 1.21330 1.21731 1.21226 1.19028 0.90985 0.83801 1.42990 0.91296 1.42554 1.05977 0.99424 1.87306 1.20470 0.91369 0.87274 0.91288 1.21989 0.93147 0.99882 0.85705 1.45661 1.11679 1.70337 1.05987 1.17863 0.87466 0.77738 0.82883 1.90753 1.14943 1.51567 1.85152 1.21313 0.95465 1.03557 0.95568 1.21755 1.01464 0.90997 0.90434 1.21863 0.93073 1.00054 1.01162 1.21637 0.93038 0.99786 0.93278 1.20118 0.99783 0.71773 0.81338 1.93039 1.95121 1.45052 1.84122 1.93026 1.97592 1.58877 1.67997 1.67240 1.39908 1.11028 0.98513 1.23065 0.88843 0.91896 0.97855 1.22822 0.97284 1.00375 0.96695 1.22388 0.98765 0.97064 0.97251 1.22283 0.99647 0.97618 0.96265 1.22434 0.99891 0.96323 0.97889 0.93441 0.78077 0.92699 0.91060 0.76183 0.82742 0.83599 0.84859 0.81113 0.92880 0.90217 0.91366 0.92689 0.92304 0.92256 0.91185 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.94 13.06 55.49 0.72 -25.21 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -5.90 8.39 -15.06 -0.13 -6.02 16 8 H 0.07 1.73 7.23 -52.49 -0.38 1.35 16 9 N -0.71 -15.13 4.76 -46.19 -0.22 -15.35 16 10 C 0.19 3.18 0.68 -130.70 -0.09 3.09 16 11 C 0.12 2.03 3.99 -4.04 -0.02 2.02 16 12 N -0.69 -11.28 5.06 -61.25 -0.31 -11.59 16 13 C 0.56 9.43 7.78 -12.34 -0.10 9.33 16 14 O -0.54 -10.72 16.42 5.31 0.09 -10.63 16 15 C -0.15 -2.23 5.89 -104.82 -0.62 -2.85 16 16 C -0.02 -0.25 9.72 -38.87 -0.38 -0.63 16 17 C -0.14 -1.61 9.60 -39.50 -0.38 -1.99 16 18 C 0.06 0.74 6.28 -82.51 -0.52 0.22 16 19 C 0.32 3.25 5.54 36.01 0.20 3.44 16 20 F -0.19 -2.14 17.25 2.25 0.04 -2.10 16 21 F -0.19 -2.02 17.24 2.25 0.04 -1.98 16 22 N -0.46 -6.16 10.23 -9.14 -0.09 -6.25 16 23 C 0.14 1.95 10.71 -17.13 -0.18 1.76 16 24 C -0.13 -2.13 5.94 -25.07 -0.15 -2.28 16 25 C -0.12 -1.65 6.91 -24.74 -0.17 -1.83 16 26 C -0.12 -1.52 6.83 -25.12 -0.17 -1.69 16 27 C -0.13 -1.79 5.80 -25.66 -0.15 -1.94 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.38 8.78 7.28 -40.82 -0.30 8.49 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.42 7.49 -51.93 -0.39 1.04 16 32 H 0.40 6.19 6.06 -40.82 -0.25 5.94 16 33 H 0.15 1.82 7.74 -52.49 -0.41 1.41 16 34 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.13 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.17 2.13 6.42 -52.49 -0.34 1.79 16 37 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 38 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.02 7.44 -51.93 -0.39 0.64 16 44 H 0.06 0.78 7.55 -51.93 -0.39 0.39 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -29.71 371.81 -7.80 -37.51 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -5.70 Total: 12.85 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.94 Total: 0.41 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.10 Total: -58.40 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.71 -7.80 -37.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732394683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.767 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds