Wall clock time and date at job start Tue Mar 31 2020 23:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47233 * 240.00285 * 3 2 1 5 5 H 1.48504 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46940 * 120.00217 * 3 2 1 7 7 C 1.38816 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00131 * 174.60667 * 9 7 2 11 11 C 1.53005 * 110.01356 * 301.46125 * 10 9 7 12 12 N 1.46502 * 109.47057 * 303.90115 * 11 10 9 13 13 C 1.34771 * 120.00222 * 175.13016 * 12 11 10 14 14 O 1.21558 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.47837 * 120.00460 * 179.97438 * 13 12 11 16 16 C 1.40020 * 120.56587 * 180.02562 * 15 13 12 17 17 C 1.38355 * 118.28997 * 179.73131 * 16 15 13 18 18 C 1.38346 * 119.30332 * 0.50984 * 17 16 15 19 19 C 1.50702 * 119.45874 * 179.75203 * 18 17 16 20 20 F 1.39903 * 109.46994 * 299.72419 * 19 18 17 21 21 F 1.39899 * 109.47607 * 59.72601 * 19 18 17 22 22 N 1.31920 * 121.08131 * 359.47437 * 18 17 16 23 23 C 1.31699 * 121.88165 * 0.25339 * 22 18 17 24 24 C 1.54265 * 110.07432 * 62.87237 * 10 9 7 25 25 C 1.54889 * 104.19239 * 95.69866 * 24 10 9 26 26 C 1.54888 * 102.74984 * 37.94437 * 25 24 10 27 27 C 1.53873 * 110.03295 * 180.02562 * 10 9 7 28 28 H 0.96998 * 120.00001 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00018 * 354.60521 * 9 7 2 30 30 H 1.08997 * 109.46693 * 183.90692 * 11 10 9 31 31 H 1.08995 * 109.47484 * 63.90085 * 11 10 9 32 32 H 0.97007 * 119.99845 * 355.13008 * 12 11 10 33 33 H 1.08001 * 120.84887 * 359.97438 * 16 15 13 34 34 H 1.08006 * 120.34764 * 180.26470 * 17 16 15 35 35 H 1.09004 * 109.47262 * 179.73171 * 19 18 17 36 36 H 1.07998 * 119.71721 * 180.02562 * 23 22 18 37 37 H 1.08998 * 110.49026 * 214.37542 * 24 10 9 38 38 H 1.09004 * 110.48727 * 337.02625 * 24 10 9 39 39 H 1.09000 * 110.76125 * 279.62899 * 25 24 10 40 40 H 1.09004 * 110.75694 * 156.25785 * 25 24 10 41 41 H 1.08999 * 110.48575 * 203.38038 * 26 25 24 42 42 H 1.08999 * 110.48779 * 80.73345 * 26 25 24 43 43 H 1.08997 * 110.03045 * 359.94704 * 27 10 9 44 44 H 1.08998 * 110.03318 * 121.37936 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0531 -3.6540 -0.1214 11 6 2.8623 -3.6720 -1.4199 12 7 1.9681 -3.4341 -2.5558 13 6 2.4755 -3.3084 -3.7980 14 8 3.6750 -3.3930 -3.9760 15 6 1.5732 -3.0689 -4.9443 16 6 2.0876 -2.9371 -6.2399 17 6 1.2002 -2.7195 -7.2788 18 6 -0.1531 -2.6293 -7.0057 19 6 -1.1223 -2.3868 -8.1339 20 9 -0.8191 -1.1708 -8.7558 21 9 -1.0223 -3.4251 -9.0661 22 7 -0.6094 -2.7576 -5.7746 23 6 0.1945 -2.9710 -4.7535 24 6 2.9915 -3.8419 1.0885 25 6 2.1742 -4.7176 2.0705 26 6 1.4382 -5.6975 1.1234 27 6 1.0656 -4.8338 -0.0982 28 1 -0.4850 0.8400 0.0004 29 1 0.3587 -2.3900 0.0770 30 1 3.3442 -4.6429 -1.5341 31 1 3.6218 -2.8910 -1.3856 32 1 1.0109 -3.3670 -2.4138 33 1 3.1495 -3.0074 -6.4240 34 1 1.5604 -2.6172 -8.2919 35 1 -2.1376 -2.3495 -7.7390 36 1 -0.2169 -3.0710 -3.7599 37 1 3.9040 -4.3565 0.7874 38 1 3.2272 -2.8790 1.5417 39 1 1.4611 -4.1103 2.6280 40 1 2.8353 -5.2583 2.7479 41 1 0.5405 -6.0887 1.6020 42 1 2.0999 -6.5117 0.8278 43 1 0.0451 -4.4646 0.0032 44 1 1.1622 -5.4196 -1.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732394683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:45 Heat of formation + Delta-G solvation = -113.506236 kcal Electronic energy + Delta-G solvation = -29534.370458 eV Core-core repulsion = 25121.451157 eV Total energy + Delta-G solvation = -4412.919301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.12525 -48.11125 -41.84512 -40.52056 -39.43713 -35.67596 -35.21471 -34.02626 -33.35779 -32.33786 -29.73985 -29.52045 -28.15494 -26.15518 -25.06329 -24.94852 -23.79413 -21.98093 -21.21703 -20.23593 -19.31192 -18.90963 -18.75603 -18.52634 -18.36290 -17.49002 -17.11855 -16.39388 -16.32479 -16.14966 -16.01116 -15.82956 -15.32982 -15.19728 -15.16464 -14.79610 -14.48444 -14.47821 -14.36320 -14.16016 -14.01858 -13.58373 -13.50508 -13.21103 -12.92528 -12.48100 -12.40401 -12.38952 -12.16047 -11.87110 -11.71766 -11.58177 -11.43424 -11.37612 -11.29129 -11.20635 -10.88963 -10.74782 -10.57318 -9.99623 -8.94655 -7.91063 -5.15943 -0.77024 -0.04752 1.43486 1.45723 1.49438 1.60974 2.07345 2.18482 2.53372 2.56070 3.09243 3.22130 3.40088 3.52710 3.57923 3.68768 3.78059 3.82239 3.87530 3.91918 3.97495 4.10856 4.15093 4.37898 4.45184 4.58861 4.66551 4.68857 4.76908 4.84365 4.89181 4.98070 5.05974 5.14566 5.20069 5.20545 5.29366 5.41479 5.43315 5.56441 5.62920 5.66632 6.32753 6.41667 6.49641 7.09917 7.40843 8.14365 8.38594 9.30849 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.003377 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.189349 B = 8289.511950 C = 9643.804890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.944 3.056 4 H -0.292 1.292 5 H -0.298 1.298 6 H -0.282 1.282 7 C -0.215 4.215 8 H 0.063 0.937 9 N -0.714 5.714 10 C 0.184 3.816 11 C 0.124 3.876 12 N -0.686 5.686 13 C 0.555 3.445 14 O -0.577 6.577 15 C -0.171 4.171 16 C -0.020 4.020 17 C -0.136 4.136 18 C 0.057 3.943 19 C 0.330 3.670 20 F -0.198 7.198 21 F -0.194 7.194 22 N -0.468 5.468 23 C 0.140 3.860 24 C -0.132 4.132 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.122 4.122 28 H 0.248 0.752 29 H 0.377 0.623 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.407 0.593 33 H 0.162 0.838 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 -12.258 -10.761 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.253 4.253 3 Si 0.776 3.224 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.209 1.209 7 C -0.347 4.347 8 H 0.081 0.919 9 N -0.354 5.354 10 C 0.093 3.907 11 C -0.001 4.001 12 N -0.334 5.334 13 C 0.341 3.659 14 O -0.459 6.459 15 C -0.177 4.177 16 C -0.046 4.046 17 C -0.156 4.156 18 C -0.082 4.082 19 C 0.275 3.725 20 F -0.179 7.179 21 F -0.175 7.175 22 N -0.177 5.177 23 C -0.019 4.019 24 C -0.172 4.172 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.210 0.790 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.244 0.756 33 H 0.180 0.820 34 H 0.191 0.809 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.355 -12.122 -10.750 16.258 hybrid contribution 0.811 1.629 0.096 1.822 sum -0.544 -10.493 -10.654 14.964 Atomic orbital electron populations 1.69724 1.05741 1.25490 1.59861 1.25147 0.95989 0.99588 1.04545 0.85658 0.77545 0.81634 0.77586 1.21930 1.22405 1.20875 1.19179 0.90793 0.85045 1.39688 0.91914 1.42627 1.05654 1.00087 1.87063 1.20734 0.92081 0.86525 0.91329 1.21887 0.92614 0.99652 0.85995 1.45654 1.11825 1.70116 1.05835 1.18220 0.87379 0.76825 0.83453 1.90726 1.16347 1.53176 1.85672 1.21161 0.95433 1.05707 0.95349 1.21928 1.02175 0.90427 0.90119 1.22153 0.92623 0.98801 1.02027 1.22099 0.93967 0.98656 0.93452 1.20248 1.00300 0.71358 0.80564 1.93032 1.95225 1.45466 1.84166 1.93028 1.97614 1.58935 1.67962 1.67279 1.39935 1.11515 0.98967 1.23136 0.88575 0.91810 0.98386 1.22784 0.98275 0.99542 0.96625 1.22357 0.98527 0.96961 0.97271 1.22276 1.00533 0.97318 0.94842 1.22390 0.98529 0.95330 0.99734 0.94342 0.78962 0.90774 0.94378 0.75582 0.82039 0.80926 0.82387 0.80612 0.91069 0.93454 0.93302 0.90484 0.90794 0.90140 0.91744 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.42 13.06 21.65 0.28 -54.14 16 2 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 3 Si 0.94 45.56 29.55 68.60 2.03 47.59 16 4 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.21 -10.85 8.39 84.03 0.70 -10.14 16 8 H 0.06 3.22 7.23 -2.91 -0.02 3.20 16 9 N -0.71 -30.60 4.76 -300.06 -1.43 -32.03 16 10 C 0.18 6.08 0.68 4.33 0.00 6.09 16 11 C 0.12 4.21 3.99 86.38 0.34 4.56 16 12 N -0.69 -22.33 5.06 -465.98 -2.36 -24.68 16 13 C 0.55 18.81 7.78 86.79 0.68 19.49 16 14 O -0.58 -22.86 16.42 -3.90 -0.06 -22.92 16 15 C -0.17 -4.89 5.89 -19.99 -0.12 -5.01 16 16 C -0.02 -0.49 9.72 22.73 0.22 -0.27 16 17 C -0.14 -2.84 9.60 22.32 0.21 -2.62 16 18 C 0.06 1.27 6.28 42.57 0.27 1.54 16 19 C 0.33 5.83 5.54 71.24 0.39 6.22 16 20 F -0.20 -3.98 17.25 44.97 0.78 -3.21 16 21 F -0.19 -3.58 17.24 44.97 0.78 -2.81 16 22 N -0.47 -11.97 10.23 -182.82 -1.87 -13.84 16 23 C 0.14 3.73 10.71 85.02 0.91 4.64 16 24 C -0.13 -4.17 5.94 31.67 0.19 -3.98 16 25 C -0.11 -2.98 6.91 31.88 0.22 -2.76 16 26 C -0.11 -2.47 6.83 31.64 0.22 -2.25 16 27 C -0.12 -3.17 5.80 31.29 0.18 -2.99 16 28 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.38 17.39 7.28 -92.71 -0.67 16.71 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.54 7.49 -2.39 -0.02 1.53 16 32 H 0.41 12.43 6.06 -92.70 -0.56 11.86 16 33 H 0.16 3.65 7.74 -2.91 -0.02 3.63 16 34 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.16 2.05 8.10 -2.38 -0.02 2.03 16 36 H 0.18 4.34 6.42 -2.91 -0.02 4.32 16 37 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 38 H 0.05 1.79 7.12 -2.38 -0.02 1.77 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.78 7.44 -2.39 -0.02 1.76 16 44 H 0.08 1.79 7.55 -2.39 -0.02 1.77 16 Total: -1.00 -64.40 371.81 2.86 -61.54 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.18 Total: 34.74 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.89 Total: 9.75 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -5.37 Total: -124.69 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.06 Total: -22.92 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.55 Total: -6.01 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -64.40 2.86 -61.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732394683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.967 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds