Wall clock time and date at job start Tue Mar 31 2020 22:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47407 * 2 1 4 4 N 1.28600 * 124.61955 * 269.99726 * 3 2 1 5 5 C 1.31381 * 108.71928 * 179.71914 * 4 3 2 6 6 C 1.39682 * 105.89647 * 0.42618 * 5 4 3 7 7 C 1.50706 * 127.04393 * 179.84048 * 6 5 4 8 8 N 1.46896 * 109.47007 * 94.71437 * 7 6 5 9 9 C 1.46900 * 110.99811 * 174.95806 * 8 7 6 10 10 C 1.53002 * 115.55147 * 279.36363 * 9 8 7 11 11 N 1.46509 * 109.46947 * 325.03878 * 10 9 8 12 12 C 1.34774 * 119.99712 * 174.95870 * 11 10 9 13 13 O 1.21278 * 120.00442 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99808 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.47177 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00045 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00125 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00288 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00150 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47310 * 60.00123 * 20 18 16 22 22 H 1.48506 * 109.47332 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47258 * 299.99845 * 20 18 16 24 24 C 1.53002 * 117.49781 * 133.65413 * 9 8 7 25 25 C 1.52997 * 59.99912 * 252.50816 * 24 9 8 26 26 N 1.28604 * 124.61841 * 90.00062 * 3 2 1 27 27 H 1.08997 * 109.46951 * 300.00502 * 1 2 3 28 28 H 1.09006 * 109.46887 * 59.99901 * 1 2 3 29 29 H 1.08996 * 109.47646 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46951 * 239.99498 * 2 1 3 31 31 H 1.09006 * 109.46887 * 120.00099 * 2 1 3 32 32 H 1.07998 * 127.05275 * 180.27240 * 5 4 3 33 33 H 1.08990 * 109.47416 * 334.71085 * 7 6 5 34 34 H 1.09000 * 109.46678 * 214.71333 * 7 6 5 35 35 H 1.00901 * 111.00244 * 298.91396 * 8 7 6 36 36 H 1.08994 * 109.47131 * 85.03493 * 10 9 8 37 37 H 1.09001 * 109.46961 * 205.04165 * 10 9 8 38 38 H 0.97003 * 119.99944 * 354.95139 * 11 10 9 39 39 H 1.09006 * 109.46980 * 299.99934 * 14 12 11 40 40 H 1.09006 * 109.47140 * 59.99644 * 14 12 11 41 41 H 0.96996 * 120.00140 * 180.02562 * 19 18 16 42 42 H 1.09004 * 117.49900 * 0.02562 * 24 9 8 43 43 H 1.09005 * 117.49889 * 145.01762 * 24 9 8 44 44 H 1.08995 * 117.50171 * 252.50877 * 25 24 9 45 45 H 1.09005 * 117.51351 * 107.48008 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2620 2.0699 -1.0583 5 6 2.6775 3.2632 -0.6984 6 6 2.6831 3.2611 0.6984 7 6 3.0841 4.3952 1.6064 8 7 1.8893 5.1547 1.9982 9 6 2.2254 6.1958 2.9786 10 6 2.3641 5.7193 4.4259 11 7 1.3999 4.6461 4.6812 12 6 1.4083 4.0001 5.8640 13 8 2.2142 4.3068 6.7168 14 6 0.4169 2.8959 6.1265 15 16 0.6808 2.2307 7.7890 16 6 -0.5752 0.9956 7.8273 17 1 -1.2165 0.8508 6.9705 18 6 -0.7406 0.2089 8.9587 19 7 0.0406 0.3856 10.0033 20 14 -2.0718 -1.1010 8.9991 21 1 -1.8332 -2.0830 7.9111 22 1 -2.0415 -1.7974 10.3104 23 1 -3.3995 -0.4636 8.8083 24 6 1.6526 7.5955 2.7470 25 6 3.1419 7.3308 2.5176 26 7 2.2620 2.0699 1.0584 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.9594 4.0778 -1.3490 33 1 3.7770 5.0530 1.0819 34 1 3.5678 3.9939 2.4969 35 1 1.4325 5.5520 1.1910 36 1 3.3749 5.3461 4.5902 37 1 2.1693 6.5513 5.1025 38 1 0.7555 4.4006 3.9990 39 1 -0.5960 3.2911 6.0494 40 1 0.5541 2.1022 5.3919 41 1 -0.0747 -0.1645 10.7938 42 1 1.0260 7.7437 1.8674 43 1 1.3742 8.1771 3.6259 44 1 3.8435 7.7383 3.2455 45 1 3.4959 7.3048 1.4870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733236804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:35 Heat of formation + Delta-G solvation = 100.607915 kcal Electronic energy + Delta-G solvation = -26515.809043 eV Core-core repulsion = 22698.307566 eV Total energy + Delta-G solvation = -3817.501477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.73570 -39.60327 -38.34659 -35.49014 -33.87055 -33.69100 -32.36534 -32.34459 -30.31817 -29.60082 -26.54411 -26.12638 -25.32792 -24.30839 -22.90081 -22.03775 -20.97747 -20.13743 -19.93838 -17.75257 -17.58536 -16.76747 -16.52809 -16.28602 -15.95869 -15.31839 -15.04126 -14.87622 -14.74592 -14.51482 -14.32714 -13.98553 -13.74233 -13.47181 -13.24949 -13.00864 -12.92416 -12.51140 -12.48668 -12.25253 -11.89016 -11.73340 -11.65637 -11.40423 -11.11565 -10.99711 -10.97810 -10.91462 -10.71249 -10.50276 -10.31240 -9.75303 -9.47163 -9.24492 -9.00132 -8.78262 -8.61854 -8.14367 -6.41145 -6.15259 -3.84492 1.63945 2.08391 2.14575 3.09811 3.26433 3.27221 3.29328 3.32010 3.46162 3.71184 3.88076 3.92504 4.26961 4.39746 4.45766 4.52031 4.53763 4.55214 4.63377 4.78454 4.90417 5.09651 5.19505 5.22145 5.27590 5.30536 5.31969 5.41180 5.45567 5.54162 5.67018 5.68040 5.70429 5.74893 5.90545 5.91038 5.94424 6.04792 6.29325 6.49945 6.55604 6.85732 6.98792 7.65576 8.01450 8.17521 8.41621 8.82300 9.29825 10.92197 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.003186 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.868687 B = 8785.676451 C =11631.654424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.153 5.153 4 N -0.293 5.293 5 C -0.026 4.026 6 C 0.000 4.000 7 C 0.153 3.847 8 N -0.644 5.644 9 C 0.041 3.959 10 C 0.172 3.828 11 N -0.722 5.722 12 C 0.531 3.469 13 O -0.527 6.527 14 C -0.150 4.150 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.869 5.869 20 Si 0.917 3.083 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.168 4.168 25 C -0.203 4.203 26 N -0.257 5.257 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.192 0.808 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.346 0.654 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 9.107 -25.471 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 N -0.055 5.055 4 N -0.133 5.133 5 C -0.209 4.209 6 C -0.163 4.163 7 C 0.022 3.978 8 N -0.274 5.274 9 C -0.052 4.052 10 C 0.046 3.954 11 N -0.377 5.377 12 C 0.317 3.683 13 O -0.402 6.402 14 C -0.300 4.300 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.200 1.200 24 C -0.205 4.205 25 C -0.243 4.243 26 N -0.099 5.099 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.209 0.791 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.165 0.835 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.244 0.756 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.978 7.732 -23.407 25.149 hybrid contribution -1.370 0.225 -2.048 2.474 sum 3.608 7.957 -25.456 26.913 Atomic orbital electron populations 1.22178 0.92947 1.04041 1.03734 1.22016 0.96225 0.74381 1.05806 1.48222 1.44595 1.13450 0.99222 1.74008 1.17284 1.05495 1.16524 1.24598 1.05735 0.95902 0.94671 1.22954 1.05660 0.94240 0.93452 1.19996 0.90963 0.89730 0.97072 1.59958 1.25343 1.25454 1.16670 1.21871 1.04019 0.85635 0.93670 1.20607 0.93837 0.90683 0.90252 1.45769 1.37408 1.37206 1.17278 1.20266 0.84573 0.82280 0.81206 1.90684 1.39228 1.65616 1.44720 1.23491 1.00410 0.98984 1.07143 1.85341 1.46882 1.43159 1.08089 1.22841 1.19937 1.21467 1.03957 0.91063 1.24973 0.96667 0.97264 0.94652 1.70012 1.37199 1.38938 1.04266 0.86252 0.81195 0.80744 0.77457 1.19992 1.20856 1.19974 1.23344 0.96097 0.97062 1.04018 1.23544 0.93959 1.03956 1.02808 1.74149 1.15314 1.05216 1.15261 0.90999 0.91664 0.89516 0.87576 0.87120 0.79076 0.92567 0.88822 0.83477 0.91317 0.91304 0.75625 0.89500 0.89292 0.92218 0.88450 0.87689 0.87967 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.24 37.16 0.38 -0.85 16 2 C 0.14 1.05 7.26 -4.05 -0.03 1.03 16 3 N -0.15 -1.71 3.95 -10.62 -0.04 -1.75 16 4 N -0.29 -3.22 12.05 30.68 0.37 -2.85 16 5 C -0.03 -0.24 12.16 -17.21 -0.21 -0.45 16 6 C 0.00 0.00 6.91 -82.25 -0.57 -0.56 16 7 C 0.15 1.32 6.06 -4.98 -0.03 1.29 16 8 N -0.64 -5.34 5.58 -101.22 -0.57 -5.91 16 9 C 0.04 0.34 2.13 -131.60 -0.28 0.06 16 10 C 0.17 2.08 5.74 -4.04 -0.02 2.06 16 11 N -0.72 -10.61 5.40 -60.29 -0.33 -10.94 16 12 C 0.53 10.52 7.85 -10.99 -0.09 10.43 16 13 O -0.53 -12.42 15.86 5.56 0.09 -12.33 16 14 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 15 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 16 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 19 N -0.87 -26.62 13.22 55.49 0.73 -25.88 16 20 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.17 -1.13 9.87 -26.73 -0.26 -1.40 16 25 C -0.20 -1.30 9.66 -26.73 -0.26 -1.56 16 26 N -0.26 -3.27 12.05 33.72 0.41 -2.86 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.19 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.06 0.36 7.62 -51.93 -0.40 -0.04 16 34 H 0.09 1.01 8.01 -51.93 -0.42 0.60 16 35 H 0.35 2.37 8.54 -39.29 -0.34 2.03 16 36 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 37 H 0.07 0.85 7.91 -51.93 -0.41 0.44 16 38 H 0.41 5.47 7.75 -40.82 -0.32 5.15 16 39 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 40 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 41 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 43 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.51 7.86 -51.93 -0.41 0.10 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -37.00 399.83 -8.38 -45.38 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.89 Total: 4.53 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.95 Total: -6.18 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.58 Total: -50.19 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.00 -8.38 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733236804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.992 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds