Wall clock time and date at job start Tue Mar 31 2020 22:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47407 * 2 1 4 4 N 1.28600 * 124.61955 * 269.99726 * 3 2 1 5 5 C 1.31381 * 108.71928 * 179.71914 * 4 3 2 6 6 C 1.39682 * 105.89647 * 0.42618 * 5 4 3 7 7 C 1.50706 * 127.04393 * 179.84048 * 6 5 4 8 8 N 1.46896 * 109.47007 * 94.71437 * 7 6 5 9 9 C 1.46900 * 110.99811 * 174.95806 * 8 7 6 10 10 C 1.53002 * 115.55147 * 279.36363 * 9 8 7 11 11 N 1.46509 * 109.46947 * 325.03878 * 10 9 8 12 12 C 1.34774 * 119.99712 * 174.95870 * 11 10 9 13 13 O 1.21278 * 120.00442 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99808 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.47177 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00045 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00125 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00288 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00150 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47310 * 60.00123 * 20 18 16 22 22 H 1.48506 * 109.47332 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47258 * 299.99845 * 20 18 16 24 24 C 1.53002 * 117.49781 * 133.65413 * 9 8 7 25 25 C 1.52997 * 59.99912 * 252.50816 * 24 9 8 26 26 N 1.28604 * 124.61841 * 90.00062 * 3 2 1 27 27 H 1.08997 * 109.46951 * 300.00502 * 1 2 3 28 28 H 1.09006 * 109.46887 * 59.99901 * 1 2 3 29 29 H 1.08996 * 109.47646 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46951 * 239.99498 * 2 1 3 31 31 H 1.09006 * 109.46887 * 120.00099 * 2 1 3 32 32 H 1.07998 * 127.05275 * 180.27240 * 5 4 3 33 33 H 1.08990 * 109.47416 * 334.71085 * 7 6 5 34 34 H 1.09000 * 109.46678 * 214.71333 * 7 6 5 35 35 H 1.00901 * 111.00244 * 298.91396 * 8 7 6 36 36 H 1.08994 * 109.47131 * 85.03493 * 10 9 8 37 37 H 1.09001 * 109.46961 * 205.04165 * 10 9 8 38 38 H 0.97003 * 119.99944 * 354.95139 * 11 10 9 39 39 H 1.09006 * 109.46980 * 299.99934 * 14 12 11 40 40 H 1.09006 * 109.47140 * 59.99644 * 14 12 11 41 41 H 0.96996 * 120.00140 * 180.02562 * 19 18 16 42 42 H 1.09004 * 117.49900 * 0.02562 * 24 9 8 43 43 H 1.09005 * 117.49889 * 145.01762 * 24 9 8 44 44 H 1.08995 * 117.50171 * 252.50877 * 25 24 9 45 45 H 1.09005 * 117.51351 * 107.48008 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2620 2.0699 -1.0583 5 6 2.6775 3.2632 -0.6984 6 6 2.6831 3.2611 0.6984 7 6 3.0841 4.3952 1.6064 8 7 1.8893 5.1547 1.9982 9 6 2.2254 6.1958 2.9786 10 6 2.3641 5.7193 4.4259 11 7 1.3999 4.6461 4.6812 12 6 1.4083 4.0001 5.8640 13 8 2.2142 4.3068 6.7168 14 6 0.4169 2.8959 6.1265 15 16 0.6808 2.2307 7.7890 16 6 -0.5752 0.9956 7.8273 17 1 -1.2165 0.8508 6.9705 18 6 -0.7406 0.2089 8.9587 19 7 0.0406 0.3856 10.0033 20 14 -2.0718 -1.1010 8.9991 21 1 -1.8332 -2.0830 7.9111 22 1 -2.0415 -1.7974 10.3104 23 1 -3.3995 -0.4636 8.8083 24 6 1.6526 7.5955 2.7470 25 6 3.1419 7.3308 2.5176 26 7 2.2620 2.0699 1.0584 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.9594 4.0778 -1.3490 33 1 3.7770 5.0530 1.0819 34 1 3.5678 3.9939 2.4969 35 1 1.4325 5.5520 1.1910 36 1 3.3749 5.3461 4.5902 37 1 2.1693 6.5513 5.1025 38 1 0.7555 4.4006 3.9990 39 1 -0.5960 3.2911 6.0494 40 1 0.5541 2.1022 5.3919 41 1 -0.0747 -0.1645 10.7938 42 1 1.0260 7.7437 1.8674 43 1 1.3742 8.1771 3.6259 44 1 3.8435 7.7383 3.2455 45 1 3.4959 7.3048 1.4870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733236804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:35 Heat of formation + Delta-G solvation = 72.392744 kcal Electronic energy + Delta-G solvation = -26517.032545 eV Core-core repulsion = 22698.307566 eV Total energy + Delta-G solvation = -3818.724979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.48675 -40.74671 -39.47192 -36.16591 -35.13615 -34.57655 -34.43716 -33.10370 -31.23263 -30.96816 -27.84425 -27.30449 -26.96366 -24.95677 -23.45518 -22.71564 -21.72427 -21.60420 -20.83669 -19.72543 -18.31455 -17.76228 -17.62125 -17.35825 -16.92515 -16.87355 -16.41062 -16.17511 -15.93549 -15.54878 -15.15038 -15.02640 -14.66530 -14.56260 -14.48405 -14.25909 -14.15580 -13.61176 -13.36901 -13.16260 -13.09323 -13.02417 -12.86198 -12.62350 -12.34230 -12.31844 -12.13563 -11.80072 -11.71833 -11.69025 -11.29780 -11.12427 -11.02843 -10.89449 -10.27642 -10.18582 -9.96133 -9.38902 -8.65451 -8.33608 -6.11699 0.86448 1.27481 1.41655 1.43860 1.46089 1.47300 1.57565 1.67268 2.27198 2.32761 2.83072 2.99996 3.05844 3.23670 3.35192 3.68161 3.78720 3.91395 3.93609 3.95354 3.99065 4.12096 4.22305 4.29443 4.30023 4.47285 4.51538 4.60034 4.68983 4.70578 4.73436 4.77112 4.82417 4.86406 5.05946 5.09700 5.20669 5.25784 5.28589 5.41714 5.50316 5.80202 5.94788 6.20345 6.42311 6.63186 7.07068 7.32432 7.41915 8.75573 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.003186 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.868687 B = 8785.676451 C =11631.654424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 N -0.161 5.161 4 N -0.310 5.310 5 C -0.019 4.019 6 C -0.004 4.004 7 C 0.159 3.841 8 N -0.650 5.650 9 C 0.029 3.971 10 C 0.168 3.832 11 N -0.696 5.696 12 C 0.531 3.469 13 O -0.571 6.571 14 C -0.126 4.126 15 S -0.146 6.146 16 C -0.549 4.549 17 H 0.080 0.920 18 C 0.015 3.985 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.157 4.157 25 C -0.185 4.185 26 N -0.299 5.299 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.359 0.641 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.417 0.583 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.272 0.728 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 9.720 -28.336 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.007 3.993 3 N -0.063 5.063 4 N -0.151 5.151 5 C -0.202 4.202 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.282 5.282 9 C -0.064 4.064 10 C 0.044 3.956 11 N -0.349 5.349 12 C 0.316 3.684 13 O -0.450 6.450 14 C -0.277 4.277 15 S 0.081 5.919 16 C -0.696 4.696 17 H 0.098 0.902 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.195 4.195 25 C -0.225 4.225 26 N -0.141 5.141 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.244 0.756 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.180 0.820 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.255 0.745 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.934 8.368 -26.336 27.912 hybrid contribution -0.993 0.131 -1.248 1.600 sum 2.942 8.499 -27.583 29.012 Atomic orbital electron populations 1.22116 0.92580 1.05034 1.02308 1.22286 0.96539 0.73606 1.06842 1.48501 1.44824 1.14136 0.98850 1.73986 1.17942 1.06343 1.16782 1.25178 1.04368 0.96111 0.94551 1.23285 1.05129 0.93965 0.94395 1.19960 0.91466 0.89713 0.95971 1.59800 1.25462 1.25699 1.17247 1.21537 1.07055 0.86338 0.91426 1.20761 0.92199 0.89394 0.93287 1.45562 1.37367 1.36536 1.15422 1.20009 0.83834 0.82257 0.82252 1.90668 1.40874 1.66994 1.46477 1.23317 1.01941 0.99755 1.02669 1.85488 1.48036 1.44385 1.13982 1.23169 1.20041 1.21751 1.04673 0.90197 1.26122 0.99254 0.99727 0.93910 1.70177 1.39236 1.40267 1.05080 0.85016 0.77765 0.77340 0.77943 1.18636 1.20202 1.18646 1.23424 0.96685 0.94800 1.04565 1.23615 0.93814 1.01282 1.03784 1.74104 1.16809 1.06609 1.16623 0.93316 0.91972 0.87327 0.85485 0.87156 0.75567 0.89600 0.91561 0.82026 0.92736 0.91458 0.74531 0.87755 0.88214 0.91954 0.86678 0.88033 0.88082 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.24 71.98 0.74 -1.52 16 2 C 0.13 1.91 7.26 86.38 0.63 2.53 16 3 N -0.16 -3.51 3.95 -187.51 -0.74 -4.25 16 4 N -0.31 -6.41 12.05 -56.86 -0.69 -7.10 16 5 C -0.02 -0.32 12.16 85.11 1.03 0.72 16 6 C 0.00 -0.09 6.91 42.98 0.30 0.21 16 7 C 0.16 2.49 6.06 85.56 0.52 3.01 16 8 N -0.65 -9.37 5.58 -474.15 -2.65 -12.01 16 9 C 0.03 0.42 2.13 3.53 0.01 0.43 16 10 C 0.17 4.00 5.74 86.38 0.50 4.49 16 11 N -0.70 -20.21 5.40 -463.05 -2.50 -22.71 16 12 C 0.53 21.39 7.85 87.66 0.69 22.08 16 13 O -0.57 -27.88 15.86 -3.02 -0.05 -27.93 16 14 C -0.13 -5.44 6.16 71.24 0.44 -5.00 16 15 S -0.15 -8.45 20.57 -56.49 -1.16 -9.62 16 16 C -0.55 -32.38 9.50 67.95 0.65 -31.74 16 17 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.85 5.49 84.86 0.47 1.32 16 19 N -0.91 -57.03 13.22 21.65 0.29 -56.74 16 20 Si 1.00 44.38 29.55 68.60 2.03 46.41 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 24 C -0.16 -1.65 9.87 30.59 0.30 -1.35 16 25 C -0.19 -1.81 9.66 30.59 0.30 -1.51 16 26 N -0.30 -7.54 12.05 -47.24 -0.57 -8.11 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.23 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.09 0.82 7.62 -2.39 -0.02 0.80 16 34 H 0.07 1.42 8.01 -2.39 -0.02 1.40 16 35 H 0.36 3.77 8.54 -89.69 -0.77 3.00 16 36 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 37 H 0.07 1.64 7.91 -2.39 -0.02 1.62 16 38 H 0.42 10.73 7.75 -92.71 -0.72 10.01 16 39 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 40 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.11 0.85 8.07 -2.38 -0.02 0.83 16 43 H 0.10 1.18 8.05 -2.38 -0.02 1.16 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.12 0.71 7.86 -2.38 -0.02 0.70 16 Total: -1.00 -83.50 399.83 0.04 -83.45 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.47 Total: 24.93 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 6.55 Total: -6.33 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -6.86 Total: -110.92 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.62 kcal Total: -83.50 0.04 -83.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733236804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.847 kcal (2) G-P(sol) polarization free energy of solvation -83.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds