Wall clock time and date at job start Tue Mar 31 2020 22:54:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86795 * 119.99967 * 2 1
4 4 H 1.48502 * 109.47192 * 270.00325 * 3 2 1
5 5 H 1.48507 * 109.47281 * 29.99992 * 3 2 1
6 6 H 1.48496 * 109.47332 * 150.00226 * 3 2 1
7 7 C 1.38943 * 119.99678 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00540 * 359.97438 * 7 2 1
9 9 N 1.37103 * 119.99639 * 180.02562 * 7 2 1
10 10 C 1.34776 * 119.99707 * 180.02562 * 9 7 2
11 11 O 1.21288 * 120.00610 * 359.97438 * 10 9 7
12 12 C 1.50705 * 119.99619 * 179.97438 * 10 9 7
13 13 N 1.46901 * 109.46979 * 179.97438 * 12 10 9
14 14 C 1.46902 * 111.00095 * 185.28201 * 13 12 10
15 15 C 1.52999 * 115.54790 * 295.73406 * 14 13 12
16 16 N 1.46499 * 109.46802 * 279.59428 * 15 14 13
17 17 C 1.34783 * 119.99844 * 175.58197 * 16 15 14
18 18 O 1.21278 * 119.99627 * 359.97438 * 17 16 15
19 19 C 1.50699 * 119.99852 * 179.73125 * 17 16 15
20 20 C 1.52999 * 109.47046 * 180.27417 * 19 17 16
21 21 H 1.08999 * 110.62860 * 54.28966 * 20 19 17
22 22 C 1.54375 * 110.70068 * 291.20189 * 20 19 17
23 23 O 1.46265 * 104.91146 * 223.89778 * 22 20 19
24 24 C 1.34558 * 108.50516 * 32.24082 * 23 22 20
25 25 O 1.20821 * 125.94764 * 146.78113 * 24 23 22
26 26 C 1.51503 * 108.11057 * 326.76239 * 24 23 22
27 27 C 1.53000 * 117.50118 * 81.40043 * 14 13 12
28 28 C 1.52996 * 117.49954 * 150.06225 * 14 13 12
29 29 H 0.97002 * 120.00290 * 359.97438 * 1 2 3
30 30 H 0.97002 * 120.00096 * 359.97438 * 9 7 2
31 31 H 1.09005 * 109.47259 * 60.00332 * 12 10 9
32 32 H 1.09001 * 109.47272 * 299.99657 * 12 10 9
33 33 H 1.00898 * 111.00180 * 61.32863 * 13 12 10
34 34 H 1.08996 * 109.47482 * 159.59968 * 15 14 13
35 35 H 1.08994 * 109.47230 * 39.59604 * 15 14 13
36 36 H 0.97001 * 120.00320 * 355.58159 * 16 15 14
37 37 H 1.09000 * 109.46845 * 300.26419 * 19 17 16
38 38 H 1.08994 * 109.47873 * 60.27206 * 19 17 16
39 39 H 1.09003 * 110.31639 * 342.68994 * 22 20 19
40 40 H 1.09000 * 110.32397 * 104.88940 * 22 20 19
41 41 H 1.09000 * 110.40914 * 261.59447 * 26 24 23
42 42 H 1.08998 * 110.41094 * 139.16916 * 26 24 23
43 43 H 1.08996 * 117.50349 * 215.00748 * 27 14 13
44 44 H 1.09003 * 117.49715 * 0.02913 * 27 14 13
45 45 H 1.09002 * 117.50294 * 359.97350 * 28 14 13
46 46 H 1.09005 * 117.50206 * 144.99906 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4955 2.0464 -1.4001
5 1 1.4455 2.6527 0.7001
6 1 3.5456 1.4402 0.7000
7 6 2.0087 -1.2033 -0.0005
8 1 1.4688 -2.1386 -0.0005
9 7 3.3798 -1.2033 0.0000
10 6 4.0536 -2.3705 -0.0011
11 8 3.4472 -3.4210 -0.0020
12 6 5.5607 -2.3705 -0.0011
13 7 6.0503 -3.7555 -0.0017
14 6 7.5133 -3.7967 0.1246
15 6 8.2935 -3.1777 -1.0369
16 7 8.3648 -4.1358 -2.1428
17 6 8.9306 -3.7749 -3.3117
18 8 9.3802 -2.6568 -3.4480
19 6 9.0094 -4.7624 -4.4473
20 6 9.6978 -4.1070 -5.6462
21 1 10.6670 -3.7003 -5.3575
22 6 8.8032 -3.0055 -6.2541
23 8 8.8889 -3.2065 -7.7004
24 6 9.0429 -4.5215 -7.9404
25 8 8.6111 -5.1236 -8.8947
26 6 9.8523 -5.1157 -6.8059
27 6 8.1056 -3.6556 1.5282
28 6 8.1284 -5.0126 0.8203
29 1 -0.4851 0.8400 0.0004
30 1 3.8648 -0.3633 0.0004
31 1 5.9240 -1.8575 0.8894
32 1 5.9240 -1.8559 -0.8906
33 1 5.7448 -4.2467 -0.8283
34 1 9.3019 -2.9293 -0.7059
35 1 7.7880 -2.2723 -1.3725
36 1 8.0049 -5.0300 -2.0339
37 1 9.5823 -5.6342 -4.1315
38 1 8.0033 -5.0717 -4.7305
39 1 7.7738 -3.1244 -5.9160
40 1 9.1799 -2.0192 -5.9830
41 1 10.8998 -5.2067 -7.0933
42 1 9.4500 -6.0876 -6.5202
43 1 9.0510 -3.1217 1.6242
44 1 7.4096 -3.5326 2.3581
45 1 7.4475 -5.7818 1.1848
46 1 9.0890 -5.3716 0.4507
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733241001.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:54:25
Heat of formation + Delta-G solvation = -120.615010 kcal
Electronic energy + Delta-G solvation = -28947.832993 eV
Core-core repulsion = 24645.692948 eV
Total energy + Delta-G solvation = -4302.140045 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.167 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.44285 -40.19126 -38.94126 -38.02107 -37.75843 -34.73683 -34.45916 -34.10782
-32.96513 -31.67488 -29.83300 -28.17301 -26.99681 -26.32824 -23.98742 -22.73719
-22.05209 -21.67156 -20.66938 -19.82162 -19.41682 -18.38426 -18.02960 -17.31487
-16.90475 -16.81762 -16.63281 -16.14716 -15.93370 -15.44922 -15.25327 -14.89457
-14.56580 -14.39589 -14.13716 -14.04157 -13.91480 -13.62028 -13.25001 -13.16040
-12.84301 -12.67122 -12.53445 -12.47029 -12.11594 -11.88301 -11.78078 -11.71593
-11.63507 -11.19744 -10.98378 -10.78983 -10.65645 -10.62015 -10.48624 -10.02897
-9.99354 -9.60914 -9.46362 -8.74285 -8.32195 -8.21443 -6.34373 -3.86162
1.52367 2.20666 2.62753 2.99800 3.00496 3.04923 3.13386 3.48643
3.53262 3.68448 3.74285 3.84122 3.98348 4.07563 4.14123 4.29237
4.47106 4.59239 4.68541 4.74728 4.78901 4.86939 4.89408 4.97115
5.07989 5.15921 5.26211 5.28126 5.34686 5.41347 5.44974 5.47412
5.64456 5.73152 5.78961 5.86877 5.97120 6.03823 6.28710 6.93163
7.02847 7.06891 7.37271 7.54131 7.78479 8.10283 8.55674 8.91164
9.38539 9.77933 10.78622
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.009393 B = 0.002542 C = 0.002166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2980.298311 B =11012.547941 C =12921.252686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.880 5.880
2 C 0.042 3.958
3 Si 0.879 3.121
4 H -0.271 1.271
5 H -0.276 1.276
6 H -0.269 1.269
7 C -0.306 4.306
8 H 0.120 0.880
9 N -0.589 5.589
10 C 0.450 3.550
11 O -0.565 6.565
12 C 0.048 3.952
13 N -0.624 5.624
14 C 0.011 3.989
15 C 0.126 3.874
16 N -0.724 5.724
17 C 0.511 3.489
18 O -0.539 6.539
19 C -0.138 4.138
20 C -0.105 4.105
21 H 0.110 0.890
22 C 0.064 3.936
23 O -0.355 6.355
24 C 0.484 3.516
25 O -0.451 6.451
26 C -0.184 4.184
27 C -0.148 4.148
28 C -0.153 4.153
29 H 0.274 0.726
30 H 0.370 0.630
31 H 0.089 0.911
32 H 0.046 0.954
33 H 0.352 0.648
34 H 0.073 0.927
35 H 0.076 0.924
36 H 0.404 0.596
37 H 0.107 0.893
38 H 0.102 0.898
39 H 0.084 0.916
40 H 0.121 0.879
41 H 0.118 0.882
42 H 0.113 0.887
43 H 0.096 0.904
44 H 0.106 0.894
45 H 0.106 0.894
46 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.568 -8.817 -5.232 27.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.520 5.520
2 C -0.161 4.161
3 Si 0.705 3.295
4 H -0.196 1.196
5 H -0.201 1.201
6 H -0.195 1.195
7 C -0.435 4.435
8 H 0.137 0.863
9 N -0.229 5.229
10 C 0.235 3.765
11 O -0.447 6.447
12 C -0.084 4.084
13 N -0.256 5.256
14 C -0.082 4.082
15 C 0.001 3.999
16 N -0.375 5.375
17 C 0.297 3.703
18 O -0.416 6.416
19 C -0.178 4.178
20 C -0.124 4.124
21 H 0.128 0.872
22 C -0.010 4.010
23 O -0.272 6.272
24 C 0.324 3.676
25 O -0.333 6.333
26 C -0.222 4.222
27 C -0.186 4.186
28 C -0.191 4.191
29 H 0.084 0.916
30 H 0.203 0.797
31 H 0.108 0.892
32 H 0.064 0.936
33 H 0.172 0.828
34 H 0.091 0.909
35 H 0.095 0.905
36 H 0.238 0.762
37 H 0.125 0.875
38 H 0.120 0.880
39 H 0.102 0.898
40 H 0.139 0.861
41 H 0.136 0.864
42 H 0.131 0.869
43 H 0.114 0.886
44 H 0.125 0.875
45 H 0.124 0.876
46 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 24.885 -8.795 -5.261 26.913
hybrid contribution 0.609 1.304 -0.585 1.554
sum 25.494 -7.491 -5.846 27.207
Atomic orbital electron populations
1.69619 1.05654 1.27566 1.49156 1.25040 0.95498 0.98005 0.97564
0.86680 0.79805 0.84027 0.78939 1.19596 1.20112 1.19455 1.19420
0.79184 0.96633 1.48226 0.86276 1.42207 1.07563 1.06153 1.66939
1.19648 0.88032 0.84598 0.84209 1.90566 1.69420 1.30898 1.53788
1.21710 0.95080 0.90115 1.01533 1.59935 1.04691 1.14156 1.46777
1.21699 0.88466 1.04519 0.93492 1.21440 1.00413 0.92303 0.85758
1.46008 1.61123 1.17197 1.13216 1.20568 0.77581 0.88711 0.83450
1.90728 1.47102 1.21618 1.82199 1.21814 1.03731 0.98905 0.93325
1.22161 1.01694 0.95053 0.93521 0.87170 1.24279 1.00783 1.01734
0.74205 1.87362 1.86294 1.26027 1.27546 1.23266 0.76880 0.81302
0.86184 1.90723 1.47173 1.62710 1.32666 1.23029 1.03446 1.01276
0.94454 1.23082 1.01846 0.99614 0.94053 1.23074 1.01459 0.91827
1.02734 0.91559 0.79683 0.89250 0.93589 0.82789 0.90925 0.90534
0.76169 0.87511 0.87997 0.89776 0.86087 0.86353 0.86912 0.88563
0.87527 0.87591 0.88723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16
2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16
3 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16
4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16
7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.72 16
8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16
9 N -0.59 -13.78 5.09 -10.96 -0.06 -13.84 16
10 C 0.45 9.86 7.83 -10.98 -0.09 9.77 16
11 O -0.56 -14.71 15.89 5.55 0.09 -14.62 16
12 C 0.05 0.74 5.88 -4.97 -0.03 0.71 16
13 N -0.62 -8.41 6.15 -101.21 -0.62 -9.03 16
14 C 0.01 0.11 1.72 -131.60 -0.23 -0.12 16
15 C 0.13 1.12 5.67 -4.04 -0.02 1.10 16
16 N -0.72 -5.07 5.52 -60.30 -0.33 -5.41 16
17 C 0.51 3.91 7.64 -10.98 -0.08 3.82 16
18 O -0.54 -6.04 15.12 5.56 0.08 -5.96 16
19 C -0.14 -0.57 4.89 -27.88 -0.14 -0.71 16
20 C -0.11 -0.54 2.76 -89.13 -0.25 -0.78 16
21 H 0.11 0.56 7.97 -51.93 -0.41 0.14 16
22 C 0.06 0.48 6.49 37.88 0.25 0.73 16
23 O -0.35 -3.62 11.17 -39.72 -0.44 -4.06 16
24 C 0.48 4.66 8.51 36.40 0.31 4.97 16
25 O -0.45 -6.01 18.00 -18.31 -0.33 -6.34 16
26 C -0.18 -0.88 6.61 -26.72 -0.18 -1.06 16
27 C -0.15 -1.28 10.10 -26.69 -0.27 -1.55 16
28 C -0.15 -1.18 10.07 -26.70 -0.27 -1.45 16
29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16
30 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16
31 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16
32 H 0.05 0.64 6.82 -51.93 -0.35 0.29 16
33 H 0.35 4.83 8.71 -39.29 -0.34 4.49 16
34 H 0.07 0.62 7.94 -51.93 -0.41 0.21 16
35 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16
36 H 0.40 2.06 8.41 -40.82 -0.34 1.72 16
37 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16
38 H 0.10 0.35 8.03 -51.93 -0.42 -0.07 16
39 H 0.08 0.62 7.73 -51.93 -0.40 0.22 16
40 H 0.12 0.93 7.98 -51.93 -0.41 0.51 16
41 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16
42 H 0.11 0.36 7.74 -51.93 -0.40 -0.04 16
43 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16
44 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16
45 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16
46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
LS Contribution 389.47 15.07 5.87 5.87
Total: -1.00 -36.57 389.47 -7.51 -44.08
By element:
Atomic # 1 Polarization: 18.39 SS G_CDS: -6.59 Total: 11.80 kcal
Atomic # 6 Polarization: 9.00 SS G_CDS: -1.24 Total: 7.76 kcal
Atomic # 7 Polarization: -52.83 SS G_CDS: -0.24 Total: -53.07 kcal
Atomic # 8 Polarization: -30.37 SS G_CDS: -0.60 Total: -30.97 kcal
Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -36.57 -7.51 -44.08 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733241001.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.535 kcal
(2) G-P(sol) polarization free energy of solvation -36.570 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds