Wall clock time and date at job start Tue Mar 31 2020 22:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48508 * 109.47006 * 269.99914 * 3 2 1 5 5 H 1.48505 * 109.47112 * 29.99786 * 3 2 1 6 6 H 1.48500 * 109.47314 * 150.00213 * 3 2 1 7 7 C 1.38950 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00157 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99696 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00227 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99963 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47275 * 180.02562 * 12 10 9 14 14 C 1.46905 * 111.00219 * 186.79425 * 13 12 10 15 15 C 1.53000 * 115.56229 * 319.87663 * 14 13 12 16 16 N 1.46503 * 109.46758 * 278.53231 * 15 14 13 17 17 C 1.34777 * 119.99646 * 184.97638 * 16 15 14 18 18 O 1.21278 * 120.00424 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99996 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47276 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.76869 * 308.52234 * 20 19 17 22 22 C 1.54571 * 110.86971 * 72.27732 * 20 19 17 23 23 O 1.45831 * 104.44712 * 145.01443 * 22 20 19 24 24 C 1.34067 * 109.90352 * 329.39579 * 23 22 20 25 25 O 1.20826 * 125.09225 * 200.83904 * 24 23 22 26 26 C 1.51325 * 109.81309 * 20.82995 * 24 23 22 27 27 C 1.53000 * 117.49446 * 105.55821 * 14 13 12 28 28 C 1.52995 * 117.49958 * 174.18052 * 14 13 12 29 29 H 0.97000 * 120.00226 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00148 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46978 * 59.99574 * 12 10 9 32 32 H 1.09007 * 109.46814 * 300.00435 * 12 10 9 33 33 H 1.00903 * 111.00123 * 310.74737 * 13 12 10 34 34 H 1.08999 * 109.47210 * 38.52861 * 15 14 13 35 35 H 1.08996 * 109.46985 * 158.52771 * 15 14 13 36 36 H 0.96992 * 119.99855 * 4.96911 * 16 15 14 37 37 H 1.09007 * 109.47139 * 299.99950 * 19 17 16 38 38 H 1.09007 * 109.46938 * 59.99648 * 19 17 16 39 39 H 1.09003 * 110.43582 * 263.75708 * 22 20 19 40 40 H 1.09002 * 110.43657 * 26.26837 * 22 20 19 41 41 H 1.09001 * 110.37025 * 238.85255 * 26 24 23 42 42 H 1.09003 * 110.46300 * 116.57254 * 26 24 23 43 43 H 1.09001 * 117.49692 * 214.97977 * 27 14 13 44 44 H 1.09000 * 117.50496 * 0.02562 * 27 14 13 45 45 H 1.08997 * 117.50060 * 0.02562 * 28 14 13 46 46 H 1.08999 * 117.49634 * 145.00146 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8630 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.5053 -7.2647 -0.1590 15 6 0.1881 -7.4054 0.6066 16 7 0.4688 -7.7615 1.9997 17 6 -0.5463 -8.0370 2.8424 18 8 -1.6921 -7.9897 2.4477 19 6 -0.2577 -8.4039 4.2753 20 6 -1.5740 -8.6652 5.0100 21 1 -2.2671 -7.8360 4.8680 22 6 -2.2045 -10.0002 4.5523 23 8 -2.8351 -10.5354 5.7534 24 6 -2.1529 -10.1453 6.8396 25 8 -2.1937 -10.6889 7.9178 26 6 -1.3239 -8.9222 6.5127 27 6 1.6090 -7.9568 -1.5195 28 6 2.3687 -8.5180 -0.3158 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0016 31 1 0.6167 -4.9209 -0.8875 32 1 0.6173 -4.9204 0.8925 33 1 2.9006 -5.8551 -0.7110 34 1 -0.3532 -6.4599 0.5753 35 1 -0.4177 -8.1862 0.1469 36 1 1.3851 -7.7991 2.3155 37 1 0.3590 -9.3023 4.3032 38 1 0.2724 -7.5842 4.7605 39 1 -2.9503 -9.8230 3.7774 40 1 -1.4336 -10.6811 4.1913 41 1 -0.2674 -9.1207 6.6930 42 1 -1.6550 -8.0683 7.1039 43 1 0.7388 -8.5125 -1.8691 44 1 2.1916 -7.4589 -2.2945 45 1 3.4508 -8.3891 -0.2987 46 1 1.9985 -9.4427 0.1268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733241002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:29 Heat of formation + Delta-G solvation = -129.592815 kcal Electronic energy + Delta-G solvation = -28805.099011 eV Core-core repulsion = 24502.569659 eV Total energy + Delta-G solvation = -4302.529352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42151 -40.10472 -38.92394 -37.92311 -37.72084 -34.71587 -34.35774 -34.09410 -32.82978 -31.27250 -29.77364 -28.09870 -26.64750 -26.46112 -24.12796 -22.71732 -22.02485 -21.66270 -20.51019 -19.80874 -19.37157 -18.01159 -17.90311 -17.19662 -16.94063 -16.72759 -16.56628 -16.11304 -15.78317 -15.40750 -15.11817 -14.58204 -14.46123 -14.32653 -14.10685 -14.04868 -13.96806 -13.53265 -13.23649 -13.13688 -12.79711 -12.46166 -12.43433 -12.37174 -11.80040 -11.72714 -11.71220 -11.66059 -11.54892 -11.17332 -10.97114 -10.96387 -10.59214 -10.48369 -10.44659 -10.28264 -10.07055 -9.58850 -9.27490 -8.51145 -8.15020 -8.04107 -6.48776 -3.90192 1.69752 2.35563 2.76326 2.91862 3.12556 3.22147 3.27482 3.52376 3.57767 3.78366 3.80537 3.98036 4.09169 4.18884 4.23789 4.35532 4.54556 4.61604 4.73489 4.79969 4.85808 4.91382 5.00154 5.09046 5.16452 5.18315 5.30285 5.37903 5.40734 5.46035 5.57227 5.59128 5.68980 5.74534 5.87955 5.92760 6.15496 6.17562 6.38275 7.02744 7.09011 7.26089 7.44684 7.48348 7.94847 7.97650 8.51762 9.09624 9.45111 9.95307 10.68613 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011245 B = 0.002208 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.299816 B =12677.447303 C =14456.335435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.437 3.563 11 O -0.587 6.587 12 C 0.048 3.952 13 N -0.628 5.628 14 C 0.036 3.964 15 C 0.157 3.843 16 N -0.717 5.717 17 C 0.510 3.490 18 O -0.543 6.543 19 C -0.134 4.134 20 C -0.107 4.107 21 H 0.112 0.888 22 C 0.062 3.938 23 O -0.348 6.348 24 C 0.483 3.517 25 O -0.461 6.461 26 C -0.185 4.185 27 C -0.206 4.206 28 C -0.162 4.162 29 H 0.273 0.727 30 H 0.393 0.607 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.357 0.643 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.408 0.592 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -19.543 4.765 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.472 6.472 12 C -0.084 4.084 13 N -0.259 5.259 14 C -0.057 4.057 15 C 0.033 3.967 16 N -0.368 5.368 17 C 0.296 3.704 18 O -0.420 6.420 19 C -0.174 4.174 20 C -0.126 4.126 21 H 0.130 0.870 22 C -0.012 4.012 23 O -0.264 6.264 24 C 0.324 3.676 25 O -0.345 6.345 26 C -0.224 4.224 27 C -0.246 4.246 28 C -0.200 4.200 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.179 0.821 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.243 0.757 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.230 -19.722 5.665 20.640 hybrid contribution 0.186 1.101 -0.979 1.485 sum -2.044 -18.620 4.687 19.310 Atomic orbital electron populations 1.69609 1.05964 1.28324 1.50105 1.25286 0.95647 0.99813 0.97126 0.85848 0.79252 0.80709 0.78430 1.20365 1.20849 1.19368 1.19700 0.93372 0.82155 1.47889 0.87866 1.41853 1.09257 1.04604 1.63804 1.19750 0.88335 0.84735 0.84920 1.90524 1.13706 1.87016 1.55936 1.21734 0.94712 0.90511 1.01422 1.60006 1.13435 0.98097 1.54407 1.21826 0.95541 0.90374 0.97978 1.20900 0.93614 1.01735 0.80442 1.45922 1.10086 1.69926 1.10867 1.20531 0.85256 0.76950 0.87654 1.90725 1.20851 1.52391 1.78078 1.21720 0.98104 1.04753 0.92858 1.22281 0.97858 0.99722 0.92739 0.86994 1.24320 0.98815 0.93138 0.84965 1.87054 1.51148 1.70913 1.17325 1.23120 0.77063 0.83868 0.83564 1.90726 1.61111 1.59689 1.22937 1.23002 1.03117 0.98784 0.97463 1.23679 1.03490 1.05263 0.92181 1.23093 0.99218 0.96186 1.01461 0.91746 0.77394 0.93345 0.89409 0.82117 0.90229 0.90585 0.75678 0.88158 0.87280 0.86081 0.89811 0.86648 0.86357 0.88540 0.88305 0.88089 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 10 C 0.44 9.80 7.81 -10.98 -0.09 9.71 16 11 O -0.59 -15.14 15.62 5.55 0.09 -15.05 16 12 C 0.05 0.79 5.14 -4.98 -0.03 0.76 16 13 N -0.63 -8.83 6.51 -101.22 -0.66 -9.49 16 14 C 0.04 0.37 2.21 -131.60 -0.29 0.08 16 15 C 0.16 1.58 5.31 -4.04 -0.02 1.55 16 16 N -0.72 -6.03 5.50 -60.29 -0.33 -6.36 16 17 C 0.51 4.39 7.67 -10.98 -0.08 4.31 16 18 O -0.54 -6.54 15.13 5.56 0.08 -6.45 16 19 C -0.13 -0.66 5.01 -27.89 -0.14 -0.80 16 20 C -0.11 -0.63 2.74 -89.01 -0.24 -0.87 16 21 H 0.11 0.77 7.87 -51.93 -0.41 0.37 16 22 C 0.06 0.42 6.78 37.98 0.26 0.67 16 23 O -0.35 -3.39 11.05 -38.48 -0.43 -3.82 16 24 C 0.48 4.67 8.58 36.31 0.31 4.98 16 25 O -0.46 -6.16 18.00 -18.41 -0.33 -6.49 16 26 C -0.19 -1.03 6.52 -26.79 -0.17 -1.20 16 27 C -0.21 -1.86 9.89 -26.73 -0.26 -2.12 16 28 C -0.16 -1.34 10.12 -26.73 -0.27 -1.61 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 31 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 32 H 0.09 1.36 6.79 -51.93 -0.35 1.01 16 33 H 0.36 5.43 8.00 -39.29 -0.31 5.11 16 34 H 0.08 0.94 5.95 -51.93 -0.31 0.64 16 35 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 36 H 0.41 2.91 8.48 -40.82 -0.35 2.57 16 37 H 0.10 0.27 7.93 -51.93 -0.41 -0.14 16 38 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.12 0.87 7.82 -51.93 -0.41 0.47 16 40 H 0.08 0.43 7.77 -51.93 -0.40 0.02 16 41 H 0.12 0.43 7.80 -51.93 -0.40 0.02 16 42 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 44 H 0.10 0.93 8.12 -51.93 -0.42 0.51 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -34.23 390.56 -7.88 -42.11 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -6.56 Total: 13.48 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.27 Total: 7.65 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.32 Total: -52.86 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.59 Total: -31.81 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.23 -7.88 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733241002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.484 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds