Wall clock time and date at job start Tue Mar 31 2020 22:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48508 * 109.47006 * 269.99914 * 3 2 1 5 5 H 1.48505 * 109.47112 * 29.99786 * 3 2 1 6 6 H 1.48500 * 109.47314 * 150.00213 * 3 2 1 7 7 C 1.38950 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00157 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99696 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00227 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99963 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47275 * 180.02562 * 12 10 9 14 14 C 1.46905 * 111.00219 * 186.79425 * 13 12 10 15 15 C 1.53000 * 115.56229 * 319.87663 * 14 13 12 16 16 N 1.46503 * 109.46758 * 278.53231 * 15 14 13 17 17 C 1.34777 * 119.99646 * 184.97638 * 16 15 14 18 18 O 1.21278 * 120.00424 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99996 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47276 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.76869 * 308.52234 * 20 19 17 22 22 C 1.54571 * 110.86971 * 72.27732 * 20 19 17 23 23 O 1.45831 * 104.44712 * 145.01443 * 22 20 19 24 24 C 1.34067 * 109.90352 * 329.39579 * 23 22 20 25 25 O 1.20826 * 125.09225 * 200.83904 * 24 23 22 26 26 C 1.51325 * 109.81309 * 20.82995 * 24 23 22 27 27 C 1.53000 * 117.49446 * 105.55821 * 14 13 12 28 28 C 1.52995 * 117.49958 * 174.18052 * 14 13 12 29 29 H 0.97000 * 120.00226 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00148 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46978 * 59.99574 * 12 10 9 32 32 H 1.09007 * 109.46814 * 300.00435 * 12 10 9 33 33 H 1.00903 * 111.00123 * 310.74737 * 13 12 10 34 34 H 1.08999 * 109.47210 * 38.52861 * 15 14 13 35 35 H 1.08996 * 109.46985 * 158.52771 * 15 14 13 36 36 H 0.96992 * 119.99855 * 4.96911 * 16 15 14 37 37 H 1.09007 * 109.47139 * 299.99950 * 19 17 16 38 38 H 1.09007 * 109.46938 * 59.99648 * 19 17 16 39 39 H 1.09003 * 110.43582 * 263.75708 * 22 20 19 40 40 H 1.09002 * 110.43657 * 26.26837 * 22 20 19 41 41 H 1.09001 * 110.37025 * 238.85255 * 26 24 23 42 42 H 1.09003 * 110.46300 * 116.57254 * 26 24 23 43 43 H 1.09001 * 117.49692 * 214.97977 * 27 14 13 44 44 H 1.09000 * 117.50496 * 0.02562 * 27 14 13 45 45 H 1.08997 * 117.50060 * 0.02562 * 28 14 13 46 46 H 1.08999 * 117.49634 * 145.00146 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8630 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.5053 -7.2647 -0.1590 15 6 0.1881 -7.4054 0.6066 16 7 0.4688 -7.7615 1.9997 17 6 -0.5463 -8.0370 2.8424 18 8 -1.6921 -7.9897 2.4477 19 6 -0.2577 -8.4039 4.2753 20 6 -1.5740 -8.6652 5.0100 21 1 -2.2671 -7.8360 4.8680 22 6 -2.2045 -10.0002 4.5523 23 8 -2.8351 -10.5354 5.7534 24 6 -2.1529 -10.1453 6.8396 25 8 -2.1937 -10.6889 7.9178 26 6 -1.3239 -8.9222 6.5127 27 6 1.6090 -7.9568 -1.5195 28 6 2.3687 -8.5180 -0.3158 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0016 31 1 0.6167 -4.9209 -0.8875 32 1 0.6173 -4.9204 0.8925 33 1 2.9006 -5.8551 -0.7110 34 1 -0.3532 -6.4599 0.5753 35 1 -0.4177 -8.1862 0.1469 36 1 1.3851 -7.7991 2.3155 37 1 0.3590 -9.3023 4.3032 38 1 0.2724 -7.5842 4.7605 39 1 -2.9503 -9.8230 3.7774 40 1 -1.4336 -10.6811 4.1913 41 1 -0.2674 -9.1207 6.6930 42 1 -1.6550 -8.0683 7.1039 43 1 0.7388 -8.5125 -1.8691 44 1 2.1916 -7.4589 -2.2945 45 1 3.4508 -8.3891 -0.2987 46 1 1.9985 -9.4427 0.1268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733241002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:28 Heat of formation + Delta-G solvation = -156.360885 kcal Electronic energy + Delta-G solvation = -28806.259762 eV Core-core repulsion = 24502.569659 eV Total energy + Delta-G solvation = -4303.690102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07684 -40.90039 -40.21364 -39.19017 -38.55679 -36.04660 -35.28068 -35.05515 -34.06675 -33.22376 -30.33275 -28.71317 -28.23357 -27.11794 -25.85760 -23.40607 -22.62055 -22.29902 -21.25555 -21.07558 -20.56536 -19.93700 -18.57995 -18.11816 -17.85701 -17.51127 -17.30065 -16.97015 -16.91109 -16.52814 -16.35807 -15.95150 -15.79681 -15.51848 -15.09886 -14.96889 -14.57685 -14.41618 -14.22028 -14.10326 -13.85901 -13.66983 -13.51193 -13.27075 -12.95975 -12.93276 -12.81484 -12.43193 -12.37176 -12.28230 -12.17811 -12.12939 -11.90548 -11.53000 -11.52118 -11.32359 -11.25728 -10.78554 -10.37211 -10.04076 -9.98832 -9.19281 -8.48198 -5.97308 0.98886 1.37246 1.41887 1.54407 1.72296 2.01086 2.12915 2.27401 2.29033 2.69283 2.97810 3.05118 3.19185 3.30240 3.44787 3.61637 3.63401 3.73612 3.79368 4.03529 4.09891 4.24629 4.31459 4.44046 4.45317 4.52035 4.56606 4.64948 4.65713 4.68015 4.74527 4.80185 4.83784 4.88898 5.03811 5.12929 5.26584 5.39717 5.48885 5.75515 5.85557 6.05559 6.29238 6.37460 6.56482 6.64883 7.10093 7.32407 7.53003 8.06887 8.69030 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011245 B = 0.002208 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.299816 B =12677.447303 C =14456.335435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.081 0.919 9 N -0.571 5.571 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.068 3.932 13 N -0.634 5.634 14 C 0.023 3.977 15 C 0.161 3.839 16 N -0.711 5.711 17 C 0.506 3.494 18 O -0.582 6.582 19 C -0.126 4.126 20 C -0.101 4.101 21 H 0.098 0.902 22 C 0.059 3.941 23 O -0.371 6.371 24 C 0.480 3.520 25 O -0.508 6.508 26 C -0.169 4.169 27 C -0.203 4.203 28 C -0.140 4.140 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.350 0.650 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.416 0.584 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -20.236 4.865 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.099 0.901 9 N -0.208 5.208 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.064 4.064 13 N -0.266 5.266 14 C -0.069 4.069 15 C 0.036 3.964 16 N -0.363 5.363 17 C 0.294 3.706 18 O -0.462 6.462 19 C -0.165 4.165 20 C -0.120 4.120 21 H 0.116 0.884 22 C -0.014 4.014 23 O -0.288 6.288 24 C 0.324 3.676 25 O -0.396 6.396 26 C -0.207 4.207 27 C -0.243 4.243 28 C -0.178 4.178 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.170 0.830 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.253 0.747 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.348 -20.432 5.748 21.268 hybrid contribution -0.104 1.232 -1.084 1.644 sum -1.452 -19.200 4.665 19.812 Atomic orbital electron populations 1.69674 1.06893 1.29358 1.50166 1.26059 0.96522 1.02505 0.96227 0.84928 0.77934 0.76840 0.78657 1.19642 1.19667 1.19604 1.19668 0.92738 0.83901 1.49946 0.90093 1.41936 1.09329 1.04801 1.64737 1.20792 0.88225 0.86103 0.82434 1.90492 1.15620 1.87895 1.56867 1.21514 0.94353 0.87991 1.02559 1.60026 1.13210 0.98834 1.54490 1.21823 0.96229 0.89292 0.99591 1.20758 0.93180 1.00916 0.81518 1.45904 1.10607 1.69520 1.10285 1.21175 0.84531 0.75941 0.88909 1.90719 1.22423 1.54081 1.79007 1.21761 0.97908 1.06893 0.89944 1.22199 0.98166 0.98610 0.93018 0.88383 1.24487 0.99069 0.94180 0.83698 1.87015 1.51956 1.71510 1.18334 1.23767 0.76670 0.84433 0.82749 1.90695 1.62895 1.61367 1.24613 1.22978 1.03839 0.96838 0.97037 1.23723 1.04070 1.04857 0.91677 1.23160 0.98912 0.95560 1.00170 0.91280 0.77080 0.91914 0.88325 0.83010 0.92392 0.89962 0.74712 0.84923 0.85353 0.87040 0.87677 0.83823 0.85161 0.87177 0.88917 0.88217 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.01 29.55 68.60 2.03 44.04 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -28.49 5.29 -306.98 -1.62 -30.12 16 10 C 0.44 19.79 7.81 87.66 0.68 20.47 16 11 O -0.62 -32.63 15.62 -3.05 -0.05 -32.67 16 12 C 0.07 2.17 5.14 85.56 0.44 2.61 16 13 N -0.63 -17.14 6.51 -474.15 -3.08 -20.23 16 14 C 0.02 0.43 2.21 3.53 0.01 0.44 16 15 C 0.16 2.93 5.31 86.38 0.46 3.39 16 16 N -0.71 -10.22 5.50 -463.06 -2.55 -12.77 16 17 C 0.51 7.58 7.67 87.66 0.67 8.25 16 18 O -0.58 -13.40 15.13 -3.02 -0.05 -13.44 16 19 C -0.13 -0.80 5.01 29.85 0.15 -0.65 16 20 C -0.10 -0.96 2.74 -9.75 -0.03 -0.99 16 21 H 0.10 1.25 7.87 -2.39 -0.02 1.23 16 22 C 0.06 0.72 6.78 72.52 0.49 1.21 16 23 O -0.37 -7.12 11.05 -50.19 -0.55 -7.68 16 24 C 0.48 8.95 8.58 71.43 0.61 9.56 16 25 O -0.51 -13.70 18.00 21.64 0.39 -13.31 16 26 C -0.17 -1.45 6.52 30.55 0.20 -1.25 16 27 C -0.20 -3.20 9.89 30.59 0.30 -2.90 16 28 C -0.14 -1.92 10.12 30.59 0.31 -1.61 16 29 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 31 H 0.06 1.83 8.11 -2.39 -0.02 1.82 16 32 H 0.10 2.97 6.79 -2.38 -0.02 2.96 16 33 H 0.35 10.41 8.00 -89.69 -0.72 9.70 16 34 H 0.06 1.32 5.95 -2.39 -0.01 1.30 16 35 H 0.08 1.41 7.93 -2.39 -0.02 1.39 16 36 H 0.42 4.65 8.48 -92.71 -0.79 3.87 16 37 H 0.13 0.05 7.93 -2.38 -0.02 0.04 16 38 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.11 1.58 7.82 -2.39 -0.02 1.56 16 40 H 0.11 0.81 7.77 -2.39 -0.02 0.79 16 41 H 0.14 0.49 7.80 -2.39 -0.02 0.47 16 42 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.11 1.46 8.07 -2.39 -0.02 1.44 16 44 H 0.09 1.60 8.12 -2.39 -0.02 1.59 16 45 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -76.80 390.56 -0.81 -77.61 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -1.19 Total: 36.61 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 5.58 Total: 20.68 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -6.97 Total: -111.83 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -0.26 Total: -67.11 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -76.80 -0.81 -77.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733241002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.750 kcal (2) G-P(sol) polarization free energy of solvation -76.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds