Wall clock time and date at job start Tue Mar 31 2020 22:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40452 * 126.82401 * 2 1 4 4 C 1.30707 * 106.79318 * 179.97438 * 3 2 1 5 5 N 1.33234 * 108.95038 * 359.76507 * 4 3 2 6 6 C 1.30842 * 109.82897 * 0.40077 * 5 4 3 7 7 C 1.50695 * 125.96075 * 179.86927 * 6 5 4 8 8 N 1.46904 * 109.47015 * 269.68402 * 7 6 5 9 9 C 1.46895 * 111.00012 * 179.30063 * 8 7 6 10 10 H 1.08996 * 109.47335 * 176.53561 * 9 8 7 11 11 C 1.53001 * 109.47351 * 296.53574 * 9 8 7 12 12 N 1.46501 * 109.47345 * 304.99920 * 11 9 8 13 13 C 1.34772 * 120.00279 * 179.97438 * 12 11 9 14 14 O 1.21284 * 119.99752 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99995 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47118 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00110 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00178 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00290 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99747 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47285 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47275 * 120.00024 * 21 19 17 24 24 H 1.48508 * 109.46845 * 239.99708 * 21 19 17 25 25 C 1.52999 * 109.46981 * 56.53626 * 9 8 7 26 26 C 1.53007 * 117.50000 * 133.85947 * 25 9 8 27 27 C 1.53003 * 117.50210 * 65.20019 * 25 9 8 28 28 H 1.09001 * 109.46938 * 270.04018 * 1 2 3 29 29 H 1.09005 * 109.47234 * 30.03734 * 1 2 3 30 30 H 1.09002 * 109.46917 * 150.04227 * 1 2 3 31 31 H 1.08005 * 125.52411 * 180.02562 * 4 3 2 32 32 H 1.09010 * 109.46899 * 149.69089 * 7 6 5 33 33 H 1.08994 * 109.47866 * 29.69055 * 7 6 5 34 34 H 1.00894 * 111.00244 * 303.25740 * 8 7 6 35 35 H 1.09007 * 109.47112 * 65.00023 * 11 9 8 36 36 H 1.09001 * 109.47280 * 185.00071 * 11 9 8 37 37 H 0.97002 * 119.99362 * 359.97438 * 12 11 9 38 38 H 1.09007 * 109.47028 * 300.00047 * 15 13 12 39 39 H 1.08994 * 109.47449 * 59.99721 * 15 13 12 40 40 H 0.97000 * 119.99908 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.54938 * 279.52408 * 25 9 8 42 42 H 1.09000 * 117.49560 * 359.97438 * 26 25 9 43 43 H 1.08994 * 117.49770 * 145.01820 * 26 25 9 44 44 H 1.09002 * 117.50111 * 214.98280 * 27 25 9 45 45 H 1.09007 * 117.49232 * 359.97267 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 7 3.5096 -0.6555 0.0061 6 6 2.2707 -1.0761 0.0005 7 6 1.8248 -2.5155 0.0012 8 7 1.6798 -2.9839 -1.3836 9 6 1.2613 -4.3915 -1.4222 10 1 1.1020 -4.6949 -2.4569 11 6 2.3507 -5.2648 -0.7965 12 7 3.6255 -5.0157 -1.4741 13 6 4.7343 -5.6775 -1.0883 14 8 4.6767 -6.4797 -0.1805 15 6 6.0457 -5.4208 -1.7850 16 16 7.3344 -6.4541 -1.0449 17 6 8.7169 -5.9656 -2.0219 18 1 8.5940 -5.2276 -2.8009 19 6 9.9643 -6.5283 -1.7899 20 7 10.1144 -7.4273 -0.8401 21 14 11.4301 -6.0098 -2.8252 22 1 10.9999 -4.9931 -3.8183 23 1 12.4776 -5.4312 -1.9458 24 1 11.9782 -7.1936 -3.5350 25 6 -0.0404 -4.5582 -0.6357 26 6 -1.1570 -5.3795 -1.2835 27 6 -1.2881 -3.8580 -1.1778 28 1 -0.3633 0.0007 1.0277 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3633 -0.8904 -0.5132 31 1 4.4254 1.2875 0.0011 32 1 0.8670 -2.5990 0.5150 33 1 2.5672 -3.1258 0.5153 34 1 1.0358 -2.4010 -1.8970 35 1 2.4481 -5.0218 0.2616 36 1 2.0810 -6.3154 -0.9048 37 1 3.6714 -4.3743 -2.2004 38 1 5.9487 -5.6638 -2.8432 39 1 6.3151 -4.3702 -1.6768 40 1 10.9862 -7.8203 -0.6777 41 1 0.0695 -4.6240 0.4468 42 1 -0.9644 -5.8006 -2.2702 43 1 -1.7819 -5.9852 -0.6272 44 1 -1.9992 -3.4634 -0.4521 45 1 -1.1814 -3.2782 -2.0947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752449668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:04 Heat of formation + Delta-G solvation = 85.927892 kcal Electronic energy + Delta-G solvation = -26672.718999 eV Core-core repulsion = 22854.580949 eV Total energy + Delta-G solvation = -3818.138050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.34756 -39.73620 -38.51107 -35.79027 -34.47901 -33.83150 -32.34278 -31.75685 -29.94360 -28.35459 -27.58222 -26.06668 -25.37758 -23.20843 -22.85491 -22.24495 -21.21835 -20.26077 -19.85129 -17.80717 -17.54615 -16.97856 -16.48036 -16.15105 -15.90029 -15.62499 -15.24386 -15.01516 -14.73582 -14.69551 -14.43963 -13.79237 -13.65558 -13.56482 -13.53273 -13.28088 -12.95065 -12.73298 -12.49605 -12.29034 -12.09308 -11.90555 -11.73244 -11.39719 -11.00322 -10.92728 -10.86835 -10.76798 -10.65782 -10.17368 -9.99351 -9.85234 -9.71357 -9.27339 -9.02820 -8.99315 -8.69257 -8.12213 -6.39288 -6.13550 -3.82501 1.27167 1.96870 2.69928 3.06903 3.22948 3.26269 3.28010 3.35021 3.41466 3.63117 3.80166 3.90065 4.06265 4.21595 4.28987 4.31277 4.43908 4.50151 4.59528 4.63687 4.70902 4.86678 4.94499 4.97680 5.08624 5.11527 5.21664 5.24430 5.33561 5.38694 5.52469 5.60028 5.64846 5.74458 5.88678 6.02393 6.05753 6.19309 6.28173 6.31322 6.50675 6.73069 6.81344 7.68753 7.89655 7.93386 8.44413 8.78804 9.32148 10.94011 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.002652 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.360509 B =10553.663623 C =12494.250340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.383 5.383 3 N -0.324 5.324 4 C 0.202 3.798 5 N -0.517 5.517 6 C 0.282 3.718 7 C 0.135 3.865 8 N -0.665 5.665 9 C 0.109 3.891 10 H 0.097 0.903 11 C 0.133 3.867 12 N -0.726 5.726 13 C 0.533 3.467 14 O -0.525 6.525 15 C -0.151 4.151 16 S -0.063 6.063 17 C -0.531 4.531 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.281 1.281 25 C -0.192 4.192 26 C -0.165 4.165 27 C -0.181 4.181 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.219 0.781 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.342 0.658 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.405 0.595 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.267 0.733 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.887 13.127 -1.108 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.175 5.175 3 N -0.152 5.152 4 C -0.101 4.101 5 N -0.244 5.244 6 C 0.005 3.995 7 C 0.003 3.997 8 N -0.296 5.296 9 C -0.001 4.001 10 H 0.115 0.885 11 C 0.008 3.992 12 N -0.380 5.380 13 C 0.319 3.681 14 O -0.400 6.400 15 C -0.302 4.302 16 S 0.164 5.836 17 C -0.680 4.680 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.505 5.505 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.213 4.213 26 C -0.202 4.202 27 C -0.219 4.219 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.235 0.765 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.240 0.760 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.163 12.100 0.437 29.740 hybrid contribution -0.124 1.675 -1.711 2.397 sum -27.288 13.775 -1.273 30.594 Atomic orbital electron populations 1.21918 0.74271 1.04689 1.03811 1.50307 1.07735 1.04190 1.55246 1.78049 1.02311 1.07949 1.26851 1.26058 0.95698 0.90551 0.97783 1.70580 1.19379 1.11206 1.23261 1.24184 0.86331 0.92036 0.96968 1.20439 1.01289 0.86175 0.91756 1.60508 1.53894 1.02940 1.12230 1.21505 0.90954 0.87674 0.99945 0.88461 1.21194 0.82749 0.98569 0.96710 1.45781 1.07614 1.45404 1.39232 1.20266 0.84750 0.79902 0.83189 1.90689 1.85515 1.34304 1.29496 1.23501 0.97002 1.06202 1.03455 1.85338 0.98572 1.52264 1.47431 1.22922 0.94929 1.28580 1.21528 0.90904 1.24987 0.98391 0.94706 0.95588 1.70037 1.24215 1.26283 1.29917 0.86129 0.81292 0.78439 0.79711 1.19602 1.20617 1.20667 1.23067 0.90739 1.06756 1.00692 1.22964 1.01233 0.93441 1.02596 1.22955 0.99805 0.96016 1.03077 0.90246 0.88839 0.89419 0.76516 0.92310 0.86607 0.83992 0.91797 0.90967 0.75969 0.89458 0.89059 0.92353 0.87181 0.88317 0.88496 0.88638 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.16 59.84 0.67 1.08 16 2 N -0.38 -3.51 4.04 -65.10 -0.26 -3.77 16 3 N -0.32 -3.72 12.70 29.29 0.37 -3.35 16 4 C 0.20 2.35 13.03 -91.82 -1.20 1.15 16 5 N -0.52 -6.89 11.19 -11.97 -0.13 -7.02 16 6 C 0.28 2.94 7.50 -155.69 -1.17 1.77 16 7 C 0.13 1.06 5.14 -4.98 -0.03 1.04 16 8 N -0.66 -4.55 5.85 -108.00 -0.63 -5.18 16 9 C 0.11 0.71 2.81 -67.72 -0.19 0.52 16 10 H 0.10 0.59 7.94 -51.93 -0.41 0.18 16 11 C 0.13 1.41 4.76 -4.04 -0.02 1.39 16 12 N -0.73 -9.80 5.39 -60.29 -0.32 -10.13 16 13 C 0.53 10.20 7.85 -10.99 -0.09 10.11 16 14 O -0.52 -12.07 15.86 5.55 0.09 -11.99 16 15 C -0.15 -3.19 6.16 36.00 0.22 -2.96 16 16 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 17 C -0.53 -15.53 9.50 30.94 0.29 -15.23 16 18 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.71 13.22 55.49 0.73 -25.97 16 21 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.19 -0.95 3.79 -90.62 -0.34 -1.29 16 26 C -0.16 -0.76 10.18 -26.69 -0.27 -1.03 16 27 C -0.18 -0.63 10.03 -26.69 -0.27 -0.89 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.17 7.72 -51.93 -0.40 -0.23 16 31 H 0.22 1.82 8.06 -52.48 -0.42 1.39 16 32 H 0.06 0.32 6.43 -51.92 -0.33 -0.02 16 33 H 0.12 1.20 6.47 -51.93 -0.34 0.86 16 34 H 0.34 1.84 8.58 -39.29 -0.34 1.50 16 35 H 0.06 0.74 6.72 -51.93 -0.35 0.39 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.41 4.81 8.14 -40.82 -0.33 4.48 16 38 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 39 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.11 0.58 7.82 -51.93 -0.41 0.18 16 42 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.28 8.11 -51.92 -0.42 -0.15 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -38.30 394.27 -10.61 -48.91 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.67 Total: 1.97 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.48 Total: -2.34 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.25 Total: -55.42 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.30 -10.61 -48.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752449668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.836 kcal (2) G-P(sol) polarization free energy of solvation -38.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds