Wall clock time and date at job start Tue Mar 31 2020 22:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40452 * 126.82401 * 2 1 4 4 C 1.30707 * 106.79318 * 179.97438 * 3 2 1 5 5 N 1.33234 * 108.95038 * 359.76507 * 4 3 2 6 6 C 1.30842 * 109.82897 * 0.40077 * 5 4 3 7 7 C 1.50695 * 125.96075 * 179.86927 * 6 5 4 8 8 N 1.46904 * 109.47015 * 269.68402 * 7 6 5 9 9 C 1.46895 * 111.00012 * 179.30063 * 8 7 6 10 10 H 1.08996 * 109.47335 * 176.53561 * 9 8 7 11 11 C 1.53001 * 109.47351 * 296.53574 * 9 8 7 12 12 N 1.46501 * 109.47345 * 304.99920 * 11 9 8 13 13 C 1.34772 * 120.00279 * 179.97438 * 12 11 9 14 14 O 1.21284 * 119.99752 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99995 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47118 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00110 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00178 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00290 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99747 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47285 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47275 * 120.00024 * 21 19 17 24 24 H 1.48508 * 109.46845 * 239.99708 * 21 19 17 25 25 C 1.52999 * 109.46981 * 56.53626 * 9 8 7 26 26 C 1.53007 * 117.50000 * 133.85947 * 25 9 8 27 27 C 1.53003 * 117.50210 * 65.20019 * 25 9 8 28 28 H 1.09001 * 109.46938 * 270.04018 * 1 2 3 29 29 H 1.09005 * 109.47234 * 30.03734 * 1 2 3 30 30 H 1.09002 * 109.46917 * 150.04227 * 1 2 3 31 31 H 1.08005 * 125.52411 * 180.02562 * 4 3 2 32 32 H 1.09010 * 109.46899 * 149.69089 * 7 6 5 33 33 H 1.08994 * 109.47866 * 29.69055 * 7 6 5 34 34 H 1.00894 * 111.00244 * 303.25740 * 8 7 6 35 35 H 1.09007 * 109.47112 * 65.00023 * 11 9 8 36 36 H 1.09001 * 109.47280 * 185.00071 * 11 9 8 37 37 H 0.97002 * 119.99362 * 359.97438 * 12 11 9 38 38 H 1.09007 * 109.47028 * 300.00047 * 15 13 12 39 39 H 1.08994 * 109.47449 * 59.99721 * 15 13 12 40 40 H 0.97000 * 119.99908 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.54938 * 279.52408 * 25 9 8 42 42 H 1.09000 * 117.49560 * 359.97438 * 26 25 9 43 43 H 1.08994 * 117.49770 * 145.01820 * 26 25 9 44 44 H 1.09002 * 117.50111 * 214.98280 * 27 25 9 45 45 H 1.09007 * 117.49232 * 359.97267 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 7 3.5096 -0.6555 0.0061 6 6 2.2707 -1.0761 0.0005 7 6 1.8248 -2.5155 0.0012 8 7 1.6798 -2.9839 -1.3836 9 6 1.2613 -4.3915 -1.4222 10 1 1.1020 -4.6949 -2.4569 11 6 2.3507 -5.2648 -0.7965 12 7 3.6255 -5.0157 -1.4741 13 6 4.7343 -5.6775 -1.0883 14 8 4.6767 -6.4797 -0.1805 15 6 6.0457 -5.4208 -1.7850 16 16 7.3344 -6.4541 -1.0449 17 6 8.7169 -5.9656 -2.0219 18 1 8.5940 -5.2276 -2.8009 19 6 9.9643 -6.5283 -1.7899 20 7 10.1144 -7.4273 -0.8401 21 14 11.4301 -6.0098 -2.8252 22 1 10.9999 -4.9931 -3.8183 23 1 12.4776 -5.4312 -1.9458 24 1 11.9782 -7.1936 -3.5350 25 6 -0.0404 -4.5582 -0.6357 26 6 -1.1570 -5.3795 -1.2835 27 6 -1.2881 -3.8580 -1.1778 28 1 -0.3633 0.0007 1.0277 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3633 -0.8904 -0.5132 31 1 4.4254 1.2875 0.0011 32 1 0.8670 -2.5990 0.5150 33 1 2.5672 -3.1258 0.5153 34 1 1.0358 -2.4010 -1.8970 35 1 2.4481 -5.0218 0.2616 36 1 2.0810 -6.3154 -0.9048 37 1 3.6714 -4.3743 -2.2004 38 1 5.9487 -5.6638 -2.8432 39 1 6.3151 -4.3702 -1.6768 40 1 10.9862 -7.8203 -0.6777 41 1 0.0695 -4.6240 0.4468 42 1 -0.9644 -5.8006 -2.2702 43 1 -1.7819 -5.9852 -0.6272 44 1 -1.9992 -3.4634 -0.4521 45 1 -1.1814 -3.2782 -2.0947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752449668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:03 Heat of formation + Delta-G solvation = 57.909580 kcal Electronic energy + Delta-G solvation = -26673.933965 eV Core-core repulsion = 22854.580949 eV Total energy + Delta-G solvation = -3819.353016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10543 -40.74174 -39.53687 -36.36909 -35.35923 -34.74464 -34.55684 -32.60773 -31.27082 -29.32442 -28.24368 -27.63288 -26.74984 -23.92025 -23.14040 -23.00678 -21.94642 -21.47047 -20.63204 -19.73601 -18.24789 -17.80601 -17.48444 -17.30992 -16.91298 -16.85496 -16.41396 -16.06770 -15.88291 -15.76597 -15.35490 -15.13859 -14.60675 -14.43952 -14.39331 -14.15474 -14.03970 -13.69476 -13.67733 -13.13165 -13.11041 -12.94080 -12.88506 -12.57910 -12.55133 -12.35496 -12.11698 -11.69229 -11.23274 -11.17008 -11.13469 -11.00912 -10.83257 -10.75817 -10.56142 -10.24109 -9.97545 -9.55141 -8.62675 -8.32438 -6.09490 0.52675 1.30229 1.38262 1.42565 1.49385 1.61339 1.71583 1.89516 2.28807 2.37369 2.83430 3.01420 3.02700 3.30553 3.37160 3.53280 3.62432 3.80078 3.94671 4.08227 4.09399 4.18299 4.22450 4.30491 4.34239 4.36821 4.47834 4.50495 4.57068 4.57921 4.61817 4.81979 4.85762 4.95867 5.10298 5.26763 5.31271 5.31928 5.41900 5.44491 5.51588 5.72535 5.87883 6.22675 6.28982 6.64324 7.08937 7.11968 7.35941 8.77157 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.002652 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.360509 B =10553.663623 C =12494.250340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.376 5.376 3 N -0.344 5.344 4 C 0.189 3.811 5 N -0.566 5.566 6 C 0.279 3.721 7 C 0.143 3.857 8 N -0.670 5.670 9 C 0.127 3.873 10 H 0.110 0.890 11 C 0.129 3.871 12 N -0.698 5.698 13 C 0.533 3.467 14 O -0.570 6.570 15 C -0.128 4.128 16 S -0.149 6.149 17 C -0.544 4.544 18 H 0.080 0.920 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.272 1.272 25 C -0.199 4.199 26 C -0.174 4.174 27 C -0.161 4.161 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.235 0.765 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.356 0.644 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.417 0.583 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.271 0.729 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.035 14.692 -2.891 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.167 5.167 3 N -0.172 5.172 4 C -0.114 4.114 5 N -0.294 5.294 6 C 0.002 3.998 7 C 0.012 3.988 8 N -0.303 5.303 9 C 0.017 3.983 10 H 0.128 0.872 11 C 0.004 3.996 12 N -0.352 5.352 13 C 0.319 3.681 14 O -0.449 6.449 15 C -0.279 4.279 16 S 0.078 5.922 17 C -0.692 4.692 18 H 0.098 0.902 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.220 4.220 26 C -0.212 4.212 27 C -0.198 4.198 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.251 0.749 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.176 0.824 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.254 0.746 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -29.396 13.706 -1.376 32.464 hybrid contribution 0.356 1.219 -1.141 1.707 sum -29.040 14.925 -2.517 32.748 Atomic orbital electron populations 1.22368 0.71435 1.06569 1.05354 1.50549 1.09174 1.03152 1.53864 1.77966 1.02579 1.09320 1.27372 1.26456 0.96549 0.90453 0.97894 1.70530 1.21518 1.12241 1.25123 1.24475 0.85988 0.93030 0.96300 1.20368 1.01768 0.84271 0.92409 1.60403 1.54852 1.03199 1.11853 1.21303 0.89994 0.86628 1.00408 0.87176 1.21420 0.82227 0.99461 0.96451 1.45549 1.07200 1.43729 1.38672 1.19960 0.85404 0.80092 0.82673 1.90675 1.86134 1.36619 1.31502 1.23343 0.95743 1.04868 1.03963 1.85481 1.01908 1.55162 1.49625 1.23231 0.95445 1.28878 1.21683 0.90190 1.26127 1.01797 0.94432 0.96849 1.70194 1.25253 1.27588 1.31774 0.84906 0.76690 0.78439 0.77907 1.18167 1.19921 1.19753 1.22901 0.90281 1.08527 1.00265 1.23027 1.01015 0.94600 1.02531 1.23058 0.98085 0.95127 1.03496 0.88846 0.88074 0.86496 0.74878 0.89309 0.89349 0.82365 0.92713 0.91509 0.74604 0.87522 0.88075 0.92015 0.87526 0.88333 0.88565 0.87353 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.16 127.77 1.43 1.88 16 2 N -0.38 -6.21 4.04 -359.87 -1.45 -7.66 16 3 N -0.34 -7.64 12.70 -61.25 -0.78 -8.42 16 4 C 0.19 4.39 13.03 180.77 2.36 6.75 16 5 N -0.57 -15.05 11.19 -191.78 -2.15 -17.19 16 6 C 0.28 5.48 7.50 138.22 1.04 6.52 16 7 C 0.14 2.01 5.14 85.55 0.44 2.45 16 8 N -0.67 -7.45 5.85 -495.59 -2.90 -10.35 16 9 C 0.13 1.34 2.81 44.92 0.13 1.46 16 10 H 0.11 0.98 7.94 -2.39 -0.02 0.96 16 11 C 0.13 2.61 4.76 86.38 0.41 3.02 16 12 N -0.70 -18.26 5.39 -463.05 -2.49 -20.75 16 13 C 0.53 20.57 7.85 87.66 0.69 21.26 16 14 O -0.57 -27.07 15.86 -3.04 -0.05 -27.11 16 15 C -0.13 -5.42 6.16 71.24 0.44 -4.98 16 16 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 17 C -0.54 -32.20 9.50 67.95 0.65 -31.55 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -57.23 13.22 21.65 0.29 -56.94 16 21 Si 1.00 44.93 29.55 68.60 2.03 46.95 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 C -0.20 -1.41 3.79 -10.79 -0.04 -1.45 16 26 C -0.17 -1.13 10.18 30.62 0.31 -0.82 16 27 C -0.16 -0.46 10.03 30.62 0.31 -0.15 16 28 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.10 0.44 8.14 -2.38 -0.02 0.43 16 30 H 0.12 -0.06 7.72 -2.39 -0.02 -0.08 16 31 H 0.24 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.09 0.69 6.43 -2.38 -0.02 0.68 16 33 H 0.09 1.79 6.47 -2.39 -0.02 1.78 16 34 H 0.36 2.51 8.58 -89.70 -0.77 1.74 16 35 H 0.05 1.26 6.72 -2.38 -0.02 1.24 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.42 9.15 8.14 -92.71 -0.75 8.39 16 38 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 39 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 40 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.11 0.88 7.82 -2.39 -0.02 0.86 16 42 H 0.10 0.66 8.08 -2.39 -0.02 0.64 16 43 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.11 0.10 8.11 -2.38 -0.02 0.08 16 Total: -1.00 -87.01 394.27 -0.55 -87.57 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.50 Total: 18.08 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 8.61 Total: 5.59 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -9.48 Total: -121.33 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -87.01 -0.55 -87.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752449668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.476 kcal (2) G-P(sol) polarization free energy of solvation -87.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds