Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00119 * 2 1 4 4 H 1.08005 * 119.99835 * 201.84475 * 3 2 1 5 5 C 1.38816 * 120.00094 * 21.83821 * 3 2 1 6 6 N 1.31617 * 119.99765 * 0.75846 * 5 3 2 7 7 Si 1.86801 * 120.00007 * 180.75996 * 5 3 2 8 8 H 1.48495 * 109.47005 * 60.00262 * 7 5 3 9 9 H 1.48502 * 109.46769 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46820 * 299.99915 * 7 5 3 11 11 C 1.46504 * 119.99751 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47289 * 90.00232 * 11 2 1 13 13 H 1.08995 * 109.49989 * 55.06402 * 12 11 2 14 14 C 1.53045 * 109.49591 * 175.16090 * 12 11 2 15 15 C 1.53039 * 109.53482 * 181.31615 * 14 12 11 16 16 C 1.53195 * 109.31198 * 298.62915 * 15 14 12 17 17 N 1.46924 * 108.77262 * 54.63924 * 16 15 14 18 18 C 1.34785 * 120.63045 * 126.66426 * 17 16 15 19 19 O 1.21696 * 120.00014 * 180.76187 * 18 17 16 20 20 C 1.46666 * 119.99790 * 0.76029 * 18 17 16 21 21 C 1.37899 * 126.22437 * 25.96697 * 20 18 17 22 22 C 1.39888 * 107.09422 * 179.88295 * 21 20 18 23 23 Cl 1.73600 * 126.07545 * 180.15064 * 22 21 20 24 24 C 1.35520 * 107.85099 * 0.38925 * 22 21 20 25 25 N 1.35633 * 108.85031 * 359.75573 * 24 22 21 26 26 C 1.46497 * 125.67244 * 179.97438 * 25 24 22 27 27 C 1.46923 * 118.74014 * 306.39129 * 17 16 15 28 28 H 1.08990 * 109.47399 * 273.82740 * 1 2 3 29 29 H 1.09003 * 109.47367 * 33.82873 * 1 2 3 30 30 H 1.09009 * 109.47236 * 153.82483 * 1 2 3 31 31 H 0.97002 * 119.99847 * 179.97438 * 6 5 3 32 32 H 1.08991 * 109.47117 * 329.99725 * 11 2 1 33 33 H 1.08999 * 109.46408 * 209.99983 * 11 2 1 34 34 H 1.08998 * 109.45825 * 301.33336 * 14 12 11 35 35 H 1.09001 * 109.45786 * 61.30466 * 14 12 11 36 36 H 1.08995 * 109.49862 * 58.58570 * 15 14 12 37 37 H 1.09005 * 109.49321 * 178.65273 * 15 14 12 38 38 H 1.09002 * 109.58920 * 294.85212 * 16 15 14 39 39 H 1.08996 * 109.58504 * 174.42552 * 16 15 14 40 40 H 1.07994 * 126.45202 * 0.02959 * 21 20 18 41 41 H 1.07998 * 125.57116 * 179.74352 * 24 22 21 42 42 H 1.08997 * 109.47569 * 271.93809 * 26 25 24 43 43 H 1.09004 * 109.47243 * 31.94221 * 26 25 24 44 44 H 1.09002 * 109.46885 * 151.93623 * 26 25 24 45 45 H 1.09005 * 109.58970 * 173.39807 * 27 17 16 46 46 H 1.09000 * 109.58653 * 293.67510 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1716 1.2194 -0.3480 5 6 1.5303 2.3449 0.4472 6 7 0.2900 2.3013 0.8852 7 14 2.4574 3.9666 0.4273 8 1 2.8602 4.2894 -0.9651 9 1 1.5807 5.0443 0.9520 10 1 3.6682 3.8550 1.2797 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 2.9653 -0.9131 -1.9820 14 6 3.3206 -2.9702 -1.4461 15 6 3.6036 -3.3934 -2.8894 16 6 2.2807 -3.7160 -3.5914 17 7 1.3847 -2.5583 -3.4667 18 6 0.8151 -2.0100 -4.5583 19 8 0.0857 -1.0427 -4.4432 20 6 1.0743 -2.5793 -5.8849 21 6 1.4247 -3.8849 -6.1571 22 6 1.5707 -3.9909 -7.5443 23 17 2.0017 -5.4264 -8.4201 24 6 1.3209 -2.7725 -8.0825 25 7 1.0180 -1.9060 -7.0840 26 6 0.6867 -0.4891 -7.2536 27 6 1.1166 -2.0133 -2.1289 28 1 -0.3633 0.0686 1.0253 29 1 -0.3634 0.8537 -0.5721 30 1 -0.3634 -0.9223 -0.4534 31 1 -0.1427 3.1112 1.1980 32 1 1.6084 -2.0286 0.5129 33 1 3.1498 -1.1386 0.5133 34 1 4.2621 -2.7638 -0.9370 35 1 2.7963 -3.7735 -0.9284 36 1 4.1058 -2.5812 -3.4148 37 1 4.2417 -4.2772 -2.8908 38 1 1.8209 -4.5860 -3.1227 39 1 2.4671 -3.9219 -4.6454 40 1 1.5587 -4.6771 -5.4354 41 1 1.3573 -2.5310 -9.1345 42 1 1.6021 0.1023 -7.2396 43 1 0.1766 -0.3467 -8.2063 44 1 0.0346 -0.1687 -6.4410 45 1 0.5348 -1.0958 -2.2178 46 1 0.5597 -2.7435 -1.5417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752512890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = 50.345567 kcal Electronic energy + Delta-G solvation = -28141.969281 eV Core-core repulsion = 24287.951808 eV Total energy + Delta-G solvation = -3854.017473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80876 -39.61906 -37.48349 -36.59875 -35.58498 -33.55388 -32.56336 -31.71216 -30.36717 -29.29430 -26.82100 -26.34030 -25.49925 -25.33817 -22.53338 -22.23592 -21.05419 -20.60241 -19.70567 -19.14861 -17.27269 -16.61621 -16.49655 -15.79257 -15.68959 -14.95083 -14.83663 -14.59917 -14.40011 -14.03049 -13.92772 -13.63345 -13.39895 -13.20870 -13.09561 -12.92121 -12.78385 -12.53286 -12.39371 -12.22313 -11.64112 -11.50817 -11.18025 -11.06667 -10.93152 -10.83523 -10.69554 -10.58137 -10.42853 -10.18223 -9.88985 -9.85824 -9.80301 -9.74546 -8.84654 -8.58930 -8.45314 -8.32411 -6.68145 -5.64324 -3.10676 1.29423 1.88125 2.21120 2.55542 3.21169 3.30512 3.41949 3.46535 3.47443 4.41439 4.53727 4.59502 4.66482 4.86971 4.94910 5.01626 5.05420 5.13775 5.29934 5.35189 5.43900 5.48242 5.50471 5.56584 5.70270 5.75167 5.78126 5.94361 6.10180 6.11436 6.19618 6.21428 6.29207 6.42167 6.53516 6.56820 6.72519 6.78325 6.80820 6.91321 6.99399 7.50245 7.59262 7.79764 7.94321 8.22506 8.48566 9.32833 9.95193 10.42902 11.39606 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.002976 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.346833 B = 9405.598354 C =10304.683246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.605 5.605 3 C -0.249 4.249 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.913 5.913 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.159 3.841 12 C -0.122 4.122 13 H 0.072 0.928 14 C -0.115 4.115 15 C -0.132 4.132 16 C 0.073 3.927 17 N -0.592 5.592 18 C 0.582 3.418 19 O -0.536 6.536 20 C -0.019 4.019 21 C -0.149 4.149 22 C -0.122 4.122 23 Cl -0.053 7.053 24 C 0.026 3.974 25 N -0.402 5.402 26 C 0.058 3.942 27 C 0.124 3.876 28 H 0.020 0.980 29 H 0.057 0.943 30 H -0.007 1.007 31 H 0.251 0.749 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.166 0.834 41 H 0.177 0.823 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 -15.320 -17.113 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.328 5.328 3 C -0.379 4.379 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.559 5.559 7 Si 0.735 3.265 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.211 1.211 11 C 0.031 3.969 12 C -0.144 4.144 13 H 0.091 0.909 14 C -0.153 4.153 15 C -0.170 4.170 16 C -0.049 4.049 17 N -0.323 5.323 18 C 0.370 3.630 19 O -0.415 6.415 20 C -0.134 4.134 21 C -0.174 4.174 22 C -0.155 4.155 23 Cl -0.024 7.024 24 C -0.111 4.111 25 N -0.074 5.074 26 C -0.082 4.082 27 C 0.003 3.997 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.011 0.989 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.184 0.816 41 H 0.194 0.806 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.247 -14.349 -17.038 22.511 hybrid contribution 0.605 0.756 -0.174 0.984 sum 3.851 -13.592 -17.213 22.268 Atomic orbital electron populations 1.20937 0.82312 0.95879 0.98850 1.43909 1.02000 1.00530 1.86311 1.19141 0.97029 0.85822 1.35871 0.91589 1.25047 0.96701 0.98481 0.99441 1.70081 1.11491 1.27053 1.47245 0.86324 0.78902 0.83550 0.77677 1.21192 1.21645 1.21074 1.20707 0.96257 0.88434 0.91501 1.22283 0.94702 0.96501 1.00901 0.90942 1.21569 1.00192 0.98049 0.95496 1.21895 0.96466 1.01584 0.97072 1.22665 0.90506 0.88053 1.03720 1.47909 1.45673 1.31838 1.06913 1.16924 0.80594 0.82894 0.82588 1.90834 1.37815 1.26769 1.86058 1.20176 1.13735 0.92393 0.87117 1.21524 1.05980 0.95662 0.94271 1.19903 1.14399 0.88720 0.92445 1.98321 1.92137 1.36372 1.75592 1.21687 1.06655 0.88523 0.94227 1.43812 1.49005 1.09769 1.04842 1.22455 1.03375 0.76871 1.05499 1.21906 0.98164 1.00139 0.79479 0.96200 0.92383 0.98903 0.93807 0.94505 0.93185 0.91807 0.92136 0.91721 0.91066 0.91233 0.87167 0.81650 0.80616 0.90173 0.89396 0.86870 0.87532 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 7.96 59.85 0.48 4.65 16 2 N -0.60 -15.22 2.77 -181.12 -0.50 -15.72 16 3 C -0.25 -6.91 9.71 -15.06 -0.15 -7.06 16 4 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 5 C 0.00 0.02 5.32 -17.43 -0.09 -0.08 16 6 N -0.91 -27.08 10.09 55.49 0.56 -26.52 16 7 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.16 3.18 5.15 -4.04 -0.02 3.16 16 12 C -0.12 -2.07 2.55 -90.50 -0.23 -2.30 16 13 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 14 C -0.11 -1.48 5.17 -26.69 -0.14 -1.61 16 15 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 16 C 0.07 0.80 5.35 -3.71 -0.02 0.78 16 17 N -0.59 -8.82 2.97 -174.31 -0.52 -9.34 16 18 C 0.58 9.45 7.55 -12.85 -0.10 9.35 16 19 O -0.54 -10.61 14.36 5.19 0.07 -10.53 16 20 C -0.02 -0.26 6.52 -81.99 -0.53 -0.79 16 21 C -0.15 -1.65 8.54 -39.09 -0.33 -1.99 16 22 C -0.12 -1.26 6.66 -39.94 -0.27 -1.53 16 23 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.00 16 24 C 0.03 0.25 11.36 -16.84 -0.19 0.05 16 25 N -0.40 -4.60 3.16 -120.19 -0.38 -4.98 16 26 C 0.06 0.57 10.90 59.85 0.65 1.22 16 27 C 0.12 2.13 4.44 -3.71 -0.02 2.12 16 28 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 29 H 0.06 1.64 6.79 -51.93 -0.35 1.28 16 30 H -0.01 -0.17 6.22 -51.92 -0.32 -0.49 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 1.10 3.41 -51.93 -0.18 0.92 16 40 H 0.17 1.54 5.77 -52.49 -0.30 1.24 16 41 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 1.41 6.11 -51.93 -0.32 1.09 16 45 H 0.11 2.27 5.33 -51.93 -0.28 1.99 16 46 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -32.60 371.52 -9.58 -42.18 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.75 Total: -0.33 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.12 Total: 4.37 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.84 Total: -56.56 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.60 -9.58 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752512890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.523 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds