Wall clock time and date at job start Tue Mar 31 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48507 * 109.47206 * 269.99878 * 3 2 1 5 5 H 1.48501 * 109.47454 * 30.00098 * 3 2 1 6 6 H 1.48503 * 109.46954 * 150.00263 * 3 2 1 7 7 C 1.38811 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99929 * 180.02562 * 7 2 1 10 10 C 1.46505 * 120.00150 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47182 * 175.12944 * 10 9 7 12 12 H 1.09000 * 109.70313 * 309.52984 * 11 10 9 13 13 C 1.53188 * 109.58550 * 189.17461 * 11 10 9 14 14 C 1.53046 * 109.31436 * 185.58004 * 13 11 10 15 15 C 1.53041 * 109.53474 * 61.36306 * 14 13 11 16 16 C 1.53631 * 109.24407 * 298.51126 * 15 14 13 17 17 N 1.46924 * 109.58471 * 69.88348 * 11 10 9 18 18 C 1.34774 * 120.63621 * 353.37538 * 17 11 10 19 19 O 1.21555 * 119.99266 * 5.28223 * 18 17 11 20 20 C 1.47840 * 120.00704 * 185.28736 * 18 17 11 21 21 C 1.40026 * 120.55628 * 39.50097 * 20 18 17 22 22 C 1.38350 * 118.28579 * 180.02562 * 21 20 18 23 23 C 1.38350 * 119.30593 * 0.02562 * 22 21 20 24 24 N 1.31929 * 121.08257 * 359.97438 * 23 22 21 25 25 C 1.31698 * 121.87372 * 0.02562 * 24 23 22 26 26 C 1.50700 * 119.71308 * 180.02562 * 25 24 23 27 27 F 1.39905 * 109.46909 * 119.97429 * 26 25 24 28 28 F 1.39896 * 109.46897 * 239.97428 * 26 25 24 29 29 H 0.97008 * 119.99995 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99912 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.46674 * 55.13135 * 10 9 7 32 32 H 1.09000 * 109.47044 * 295.13112 * 10 9 7 33 33 H 1.09007 * 109.49844 * 305.52522 * 13 11 10 34 34 H 1.09000 * 109.50074 * 65.62555 * 13 11 10 35 35 H 1.08998 * 109.46319 * 181.38390 * 14 13 11 36 36 H 1.09000 * 109.45792 * 301.34558 * 14 13 11 37 37 H 1.08998 * 109.49917 * 58.58915 * 15 14 13 38 38 H 1.09006 * 109.49721 * 178.65381 * 15 14 13 39 39 H 1.09003 * 109.73785 * 295.12394 * 16 15 14 40 40 H 1.09002 * 109.66200 * 174.55349 * 16 15 14 41 41 H 1.07994 * 120.85607 * 0.02562 * 21 20 18 42 42 H 1.08007 * 120.34612 * 179.72509 * 22 21 20 43 43 H 1.08005 * 119.46127 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47250 * 359.97219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1374 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6118 -2.1940 -0.1208 12 1 5.7941 -1.5191 -0.9571 13 6 6.3602 -3.5107 -0.3508 14 6 7.8675 -3.2461 -0.3328 15 6 8.2735 -2.6923 1.0350 16 6 7.5463 -1.3611 1.2784 17 7 6.1022 -1.5822 1.1218 18 6 5.2433 -1.2254 2.0971 19 8 4.0624 -1.4954 1.9957 20 6 5.7371 -0.5055 3.2903 21 6 6.7162 0.4880 3.1677 22 6 7.1447 1.1313 4.3152 23 6 6.5978 0.7757 5.5352 24 7 5.6763 -0.1645 5.6205 25 6 5.2362 -0.8053 4.5575 26 6 4.1815 -1.8708 4.7110 27 9 3.0488 -1.5158 3.9706 28 9 4.6804 -3.0914 4.2438 29 1 -0.4850 0.8401 -0.0004 30 1 3.8645 -0.3622 0.0007 31 1 3.7852 -3.0791 -0.8423 32 1 3.9154 -3.0040 0.9313 33 1 6.1053 -4.2169 0.4395 34 1 6.0754 -3.9270 -1.3171 35 1 8.4019 -4.1773 -0.5207 36 1 8.1182 -2.5211 -1.1071 37 1 8.0006 -3.4062 1.8121 38 1 9.3506 -2.5266 1.0552 39 1 7.8831 -0.6197 0.5538 40 1 7.7546 -1.0088 2.2886 41 1 7.1263 0.7454 2.2024 42 1 7.9017 1.8997 4.2596 43 1 6.9308 1.2760 6.4326 44 1 3.9127 -1.9670 5.7629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752828626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:44 Heat of formation + Delta-G solvation = -26.967011 kcal Electronic energy + Delta-G solvation = -32300.756242 eV Core-core repulsion = 27891.589564 eV Total energy + Delta-G solvation = -4409.166679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.55493 -46.48610 -40.96409 -39.62116 -37.02733 -34.83743 -33.49333 -32.46260 -32.19786 -31.45371 -30.22653 -27.04587 -26.36077 -24.85670 -24.06152 -23.04319 -22.16733 -21.43590 -20.60934 -19.39171 -17.80395 -17.56404 -17.41465 -16.80052 -16.71886 -16.06107 -15.58632 -15.26716 -15.06641 -14.65452 -14.42626 -14.37628 -13.96474 -13.82702 -13.58387 -13.54084 -13.30294 -13.01294 -12.90167 -12.76118 -12.57313 -12.36800 -12.30298 -12.03613 -11.83080 -11.30904 -11.13802 -11.08593 -10.89453 -10.77570 -10.73082 -10.28106 -10.04061 -9.97174 -9.86333 -9.40950 -9.38375 -8.77943 -8.46825 -8.22821 -6.81200 -5.54811 -2.79218 0.51021 0.84560 3.03104 3.11536 3.41356 3.47030 3.49762 3.54162 3.59189 4.24742 4.38492 4.46613 4.53073 4.68450 4.72926 4.78208 4.82299 4.84061 5.01967 5.02078 5.15397 5.22950 5.27159 5.35382 5.36775 5.50402 5.63082 5.71351 5.72635 5.74381 5.77651 5.83501 5.89833 6.00315 6.02941 6.13303 6.22294 6.35862 6.54788 6.83441 7.19912 7.51380 7.71379 8.21220 8.62358 8.67612 9.43619 10.16759 10.36754 11.65064 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.006705 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.858428 B = 4174.867455 C = 5476.653802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.003 4.003 3 Si 0.882 3.118 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.203 4.203 8 H 0.088 0.912 9 N -0.720 5.720 10 C 0.162 3.838 11 C 0.142 3.858 12 H 0.069 0.931 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.133 4.133 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.503 3.497 19 O -0.409 6.409 20 C -0.124 4.124 21 C -0.058 4.058 22 C -0.161 4.161 23 C 0.107 3.893 24 N -0.461 5.461 25 C 0.091 3.909 26 C 0.323 3.677 27 F -0.156 7.156 28 F -0.195 7.195 29 H 0.255 0.745 30 H 0.354 0.646 31 H 0.026 0.974 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.935 -2.156 7.923 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.197 4.197 3 Si 0.715 3.285 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.333 4.333 8 H 0.106 0.894 9 N -0.364 5.364 10 C 0.035 3.965 11 C 0.039 3.961 12 H 0.087 0.913 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.023 4.023 17 N -0.349 5.349 18 C 0.286 3.714 19 O -0.275 6.275 20 C -0.130 4.130 21 C -0.085 4.085 22 C -0.180 4.180 23 C -0.051 4.051 24 N -0.170 5.170 25 C -0.049 4.049 26 C 0.268 3.732 27 F -0.137 7.137 28 F -0.176 7.176 29 H 0.065 0.935 30 H 0.187 0.813 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 21.598 -2.646 8.648 23.415 hybrid contribution 1.177 1.759 -0.793 2.260 sum 22.775 -0.887 7.856 24.108 Atomic orbital electron populations 1.69694 1.04939 1.25176 1.59237 1.24542 0.95086 0.96665 1.03379 0.86541 0.79149 0.85792 0.77043 1.21728 1.22153 1.21040 1.19012 0.80690 0.94395 1.39249 0.89450 1.42648 1.03902 1.01666 1.88138 1.20938 0.86030 0.90308 0.99255 1.21578 0.96124 0.93423 0.84996 0.91301 1.21905 0.94574 0.97449 1.02682 1.21498 0.96231 1.00916 0.96829 1.21988 0.99521 0.97325 0.98346 1.22048 0.80986 0.97333 1.01896 1.47723 1.05836 1.63619 1.17672 1.18069 0.86920 0.83194 0.83223 1.91346 1.13776 1.48449 1.73938 1.21135 0.97501 0.98708 0.95654 1.21948 0.93522 0.93043 0.99947 1.22204 1.01663 1.00857 0.93319 1.22857 0.91620 0.92779 0.97878 1.67274 1.11106 1.07116 1.31496 1.21792 0.96970 0.97433 0.88702 1.19951 0.80540 0.77822 0.94859 1.93274 1.49899 1.91455 1.79041 1.93005 1.88123 1.45402 1.91094 0.93516 0.81329 0.95596 0.92891 0.91212 0.90598 0.91842 0.91912 0.91428 0.91204 0.91715 0.89895 0.83621 0.83758 0.81737 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.45 13.97 55.49 0.78 -30.67 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 3 Si 0.88 24.09 27.74 -169.99 -4.71 19.38 16 4 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 5 H -0.29 -8.18 7.11 56.52 0.40 -7.78 16 6 H -0.28 -7.47 6.52 56.52 0.37 -7.10 16 7 C -0.20 -6.15 10.19 -15.06 -0.15 -6.31 16 8 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 9 N -0.72 -18.34 3.04 -59.91 -0.18 -18.52 16 10 C 0.16 3.38 4.87 -4.04 -0.02 3.36 16 11 C 0.14 2.24 2.92 -67.60 -0.20 2.04 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.13 -1.56 5.36 -26.61 -0.14 -1.70 16 14 C -0.12 -1.11 5.88 -26.69 -0.16 -1.27 16 15 C -0.13 -1.23 6.10 -26.38 -0.16 -1.39 16 16 C 0.10 1.08 4.94 -3.48 -0.02 1.06 16 17 N -0.61 -9.32 2.97 -166.06 -0.49 -9.81 16 18 C 0.50 9.33 5.90 -12.33 -0.07 9.26 16 19 O -0.41 -9.46 7.02 5.32 0.04 -9.42 16 20 C -0.12 -1.98 5.15 -104.82 -0.54 -2.52 16 21 C -0.06 -0.70 7.50 -38.87 -0.29 -0.99 16 22 C -0.16 -1.50 10.10 -39.50 -0.40 -1.90 16 23 C 0.11 1.09 11.17 -17.47 -0.20 0.90 16 24 N -0.46 -6.34 10.24 -9.14 -0.09 -6.43 16 25 C 0.09 1.45 6.31 -82.17 -0.52 0.93 16 26 C 0.32 5.44 5.03 36.01 0.18 5.62 16 27 F -0.16 -3.41 14.31 2.25 0.03 -3.38 16 28 F -0.19 -3.40 16.34 2.25 0.04 -3.37 16 29 H 0.25 8.15 8.31 -40.82 -0.34 7.81 16 30 H 0.35 9.02 4.97 -40.82 -0.20 8.81 16 31 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.05 1.23 6.29 -51.93 -0.33 0.91 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.08 0.83 4.63 -51.93 -0.24 0.59 16 41 H 0.15 1.48 6.55 -52.49 -0.34 1.13 16 42 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.12 1.59 8.11 -51.93 -0.42 1.17 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -38.00 349.55 -7.89 -45.89 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.77 Total: 4.16 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -2.78 Total: 6.91 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: 0.01 Total: -65.44 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.04 Total: -9.42 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.07 Total: -6.75 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.71 Total: 19.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -38.00 -7.89 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752828626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.922 kcal (2) G-P(sol) polarization free energy of solvation -38.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds