Wall clock time and date at job start Tue Mar 31 2020 23:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48507 * 109.47206 * 269.99878 * 3 2 1 5 5 H 1.48501 * 109.47454 * 30.00098 * 3 2 1 6 6 H 1.48503 * 109.46954 * 150.00263 * 3 2 1 7 7 C 1.38811 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99929 * 180.02562 * 7 2 1 10 10 C 1.46505 * 120.00150 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47182 * 175.12944 * 10 9 7 12 12 H 1.09000 * 109.70313 * 309.52984 * 11 10 9 13 13 C 1.53188 * 109.58550 * 189.17461 * 11 10 9 14 14 C 1.53046 * 109.31436 * 185.58004 * 13 11 10 15 15 C 1.53041 * 109.53474 * 61.36306 * 14 13 11 16 16 C 1.53631 * 109.24407 * 298.51126 * 15 14 13 17 17 N 1.46924 * 109.58471 * 69.88348 * 11 10 9 18 18 C 1.34774 * 120.63621 * 353.37538 * 17 11 10 19 19 O 1.21555 * 119.99266 * 5.28223 * 18 17 11 20 20 C 1.47840 * 120.00704 * 185.28736 * 18 17 11 21 21 C 1.40026 * 120.55628 * 39.50097 * 20 18 17 22 22 C 1.38350 * 118.28579 * 180.02562 * 21 20 18 23 23 C 1.38350 * 119.30593 * 0.02562 * 22 21 20 24 24 N 1.31929 * 121.08257 * 359.97438 * 23 22 21 25 25 C 1.31698 * 121.87372 * 0.02562 * 24 23 22 26 26 C 1.50700 * 119.71308 * 180.02562 * 25 24 23 27 27 F 1.39905 * 109.46909 * 119.97429 * 26 25 24 28 28 F 1.39896 * 109.46897 * 239.97428 * 26 25 24 29 29 H 0.97008 * 119.99995 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99912 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.46674 * 55.13135 * 10 9 7 32 32 H 1.09000 * 109.47044 * 295.13112 * 10 9 7 33 33 H 1.09007 * 109.49844 * 305.52522 * 13 11 10 34 34 H 1.09000 * 109.50074 * 65.62555 * 13 11 10 35 35 H 1.08998 * 109.46319 * 181.38390 * 14 13 11 36 36 H 1.09000 * 109.45792 * 301.34558 * 14 13 11 37 37 H 1.08998 * 109.49917 * 58.58915 * 15 14 13 38 38 H 1.09006 * 109.49721 * 178.65381 * 15 14 13 39 39 H 1.09003 * 109.73785 * 295.12394 * 16 15 14 40 40 H 1.09002 * 109.66200 * 174.55349 * 16 15 14 41 41 H 1.07994 * 120.85607 * 0.02562 * 21 20 18 42 42 H 1.08007 * 120.34612 * 179.72509 * 22 21 20 43 43 H 1.08005 * 119.46127 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47250 * 359.97219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1374 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6118 -2.1940 -0.1208 12 1 5.7941 -1.5191 -0.9571 13 6 6.3602 -3.5107 -0.3508 14 6 7.8675 -3.2461 -0.3328 15 6 8.2735 -2.6923 1.0350 16 6 7.5463 -1.3611 1.2784 17 7 6.1022 -1.5822 1.1218 18 6 5.2433 -1.2254 2.0971 19 8 4.0624 -1.4954 1.9957 20 6 5.7371 -0.5055 3.2903 21 6 6.7162 0.4880 3.1677 22 6 7.1447 1.1313 4.3152 23 6 6.5978 0.7757 5.5352 24 7 5.6763 -0.1645 5.6205 25 6 5.2362 -0.8053 4.5575 26 6 4.1815 -1.8708 4.7110 27 9 3.0488 -1.5158 3.9706 28 9 4.6804 -3.0914 4.2438 29 1 -0.4850 0.8401 -0.0004 30 1 3.8645 -0.3622 0.0007 31 1 3.7852 -3.0791 -0.8423 32 1 3.9154 -3.0040 0.9313 33 1 6.1053 -4.2169 0.4395 34 1 6.0754 -3.9270 -1.3171 35 1 8.4019 -4.1773 -0.5207 36 1 8.1182 -2.5211 -1.1071 37 1 8.0006 -3.4062 1.8121 38 1 9.3506 -2.5266 1.0552 39 1 7.8831 -0.6197 0.5538 40 1 7.7546 -1.0088 2.2886 41 1 7.1263 0.7454 2.2024 42 1 7.9017 1.8997 4.2596 43 1 6.9308 1.2760 6.4326 44 1 3.9127 -1.9670 5.7629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752828626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:43 Heat of formation + Delta-G solvation = -54.318141 kcal Electronic energy + Delta-G solvation = -32301.942276 eV Core-core repulsion = 27891.589564 eV Total energy + Delta-G solvation = -4410.352713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.95377 -47.94637 -42.08393 -40.72223 -38.20993 -36.60874 -34.70073 -33.79636 -33.46959 -32.72114 -31.86286 -28.27342 -27.72968 -26.15748 -25.08240 -24.29547 -23.73535 -22.76784 -21.73134 -20.58396 -19.63865 -18.84723 -18.61527 -18.19900 -17.98268 -17.24647 -16.69421 -16.67681 -16.31841 -16.02757 -15.79437 -15.64436 -15.36793 -14.97675 -14.90058 -14.66217 -14.51031 -14.48606 -14.31393 -14.09023 -14.05626 -13.73465 -13.73111 -13.42634 -13.19783 -12.89115 -12.71138 -12.36676 -12.28926 -12.06781 -11.86937 -11.77767 -11.61513 -11.43586 -10.96658 -10.89756 -10.85138 -10.40790 -9.91428 -9.57704 -8.92184 -7.94967 -5.17865 -0.47177 -0.06165 1.24568 1.33270 1.38760 1.85630 1.97017 2.31728 2.50525 2.52906 3.15001 3.25986 3.36585 3.42464 3.64105 3.73577 3.82160 3.86636 3.92746 3.97843 4.06945 4.08228 4.24571 4.27164 4.30068 4.33190 4.38984 4.56364 4.66114 4.81751 4.84719 4.91876 4.93520 5.01014 5.08530 5.13398 5.22775 5.30430 5.42427 5.49558 5.75388 5.80657 6.27680 6.46147 6.60923 7.16230 7.36992 7.94248 8.13534 9.29089 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.006705 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.858428 B = 4174.867455 C = 5476.653802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.995 5.995 2 C -0.077 4.077 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.188 4.188 8 H 0.043 0.957 9 N -0.719 5.719 10 C 0.164 3.836 11 C 0.147 3.853 12 H 0.080 0.920 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.129 4.129 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.502 3.498 19 O -0.475 6.475 20 C -0.156 4.156 21 C -0.058 4.058 22 C -0.136 4.136 23 C 0.111 3.889 24 N -0.478 5.478 25 C 0.070 3.930 26 C 0.311 3.689 27 F -0.193 7.193 28 F -0.206 7.206 29 H 0.252 0.748 30 H 0.357 0.643 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.197 0.803 43 H 0.209 0.791 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.879 0.356 8.489 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C -0.266 4.266 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.320 4.320 8 H 0.061 0.939 9 N -0.362 5.362 10 C 0.038 3.962 11 C 0.044 3.956 12 H 0.098 0.902 13 C -0.160 4.160 14 C -0.148 4.148 15 C -0.167 4.167 16 C -0.029 4.029 17 N -0.344 5.344 18 C 0.287 3.713 19 O -0.346 6.346 20 C -0.161 4.161 21 C -0.084 4.084 22 C -0.155 4.155 23 C -0.047 4.047 24 N -0.187 5.187 25 C -0.068 4.068 26 C 0.257 3.743 27 F -0.174 7.174 28 F -0.187 7.187 29 H 0.060 0.940 30 H 0.189 0.811 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.186 0.814 42 H 0.214 0.786 43 H 0.226 0.774 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 27.665 -0.171 9.211 29.159 hybrid contribution -0.488 0.884 -0.765 1.266 sum 27.177 0.713 8.446 28.469 Atomic orbital electron populations 1.69901 1.06961 1.25855 1.62164 1.25343 0.96052 1.00749 1.04467 0.85310 0.77888 0.80199 0.77716 1.19883 1.22907 1.19530 1.18905 0.83035 0.92687 1.37407 0.93927 1.42465 1.01951 1.03227 1.88586 1.20913 0.89734 0.88321 0.97213 1.21457 0.92626 0.95723 0.85769 0.90197 1.21873 0.96765 0.94888 1.02510 1.21492 0.93381 1.02410 0.97543 1.21985 1.01302 0.95909 0.97503 1.22445 0.77840 0.99096 1.03483 1.47925 1.07798 1.62172 1.16502 1.18702 0.86630 0.81957 0.84008 1.91340 1.16344 1.51166 1.75782 1.21063 0.99936 1.00822 0.94312 1.22280 0.92154 0.91781 1.02203 1.22767 1.01059 1.00133 0.91514 1.23763 0.89656 0.90976 1.00256 1.67295 1.12505 1.08275 1.30632 1.21523 0.97453 0.98137 0.89725 1.20445 0.80299 0.78172 0.95415 1.93186 1.52205 1.91841 1.80177 1.92962 1.88151 1.46231 1.91349 0.93965 0.81079 0.96232 0.95923 0.92941 0.89712 0.89987 0.90335 0.93127 0.87720 0.88938 0.88829 0.81400 0.78559 0.77399 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -70.32 13.97 21.65 0.30 -70.02 16 2 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 3 Si 0.96 51.48 27.74 68.60 1.90 53.38 16 4 H -0.27 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.30 -16.39 7.11 99.48 0.71 -15.68 16 6 H -0.27 -13.59 6.52 99.48 0.65 -12.95 16 7 C -0.19 -12.17 10.19 84.03 0.86 -11.31 16 8 H 0.04 3.05 8.06 -2.91 -0.02 3.03 16 9 N -0.72 -38.15 3.04 -343.45 -1.04 -39.20 16 10 C 0.16 7.27 4.87 86.38 0.42 7.69 16 11 C 0.15 4.58 2.92 44.97 0.13 4.71 16 12 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.12 -2.83 5.36 30.67 0.16 -2.66 16 14 C -0.11 -1.68 5.88 30.62 0.18 -1.50 16 15 C -0.13 -1.86 6.10 30.82 0.19 -1.67 16 16 C 0.09 1.62 4.94 86.51 0.43 2.04 16 17 N -0.61 -17.73 2.97 -797.57 -2.37 -20.09 16 18 C 0.50 18.76 5.90 86.79 0.51 19.27 16 19 O -0.47 -23.22 7.02 -3.89 -0.03 -23.25 16 20 C -0.16 -4.77 5.15 -19.99 -0.10 -4.87 16 21 C -0.06 -1.15 7.50 22.73 0.17 -0.98 16 22 C -0.14 -1.70 10.10 22.32 0.23 -1.47 16 23 C 0.11 1.73 11.17 84.70 0.95 2.67 16 24 N -0.48 -12.03 10.24 -182.84 -1.87 -13.90 16 25 C 0.07 2.21 6.31 42.89 0.27 2.48 16 26 C 0.31 11.05 5.03 71.24 0.36 11.41 16 27 F -0.19 -9.16 14.31 44.97 0.64 -8.52 16 28 F -0.21 -7.70 16.34 44.97 0.73 -6.96 16 29 H 0.25 16.93 8.31 -92.70 -0.77 16.16 16 30 H 0.36 18.31 4.97 -92.71 -0.46 17.85 16 31 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 32 H 0.02 1.16 6.29 -2.39 -0.02 1.15 16 33 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 40 H 0.09 1.46 4.63 -2.39 -0.01 1.45 16 41 H 0.17 2.48 6.55 -2.91 -0.02 2.46 16 42 H 0.20 0.49 8.06 -2.91 -0.02 0.46 16 43 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.15 4.15 8.11 -2.39 -0.02 4.13 16 Total: -1.00 -93.77 349.55 4.01 -89.76 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.52 Total: 17.59 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 5.22 Total: 21.21 kcal Atomic # 7 Polarization: -138.23 SS G_CDS: -4.98 Total: -143.21 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.03 Total: -23.25 kcal Atomic # 9 Polarization: -16.86 SS G_CDS: 1.38 Total: -15.48 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 1.90 Total: 53.38 kcal Total: -93.77 4.01 -89.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752828626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.442 kcal (2) G-P(sol) polarization free energy of solvation -93.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds