Wall clock time and date at job start Tue Mar 31 2020 22:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 119.99602 * 2 1 4 4 O 1.21279 * 119.99369 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00473 * 0.02562 * 3 2 1 6 6 S 1.81000 * 109.47221 * 179.97438 * 5 3 2 7 7 C 1.76203 * 99.99739 * 180.02562 * 6 5 3 8 8 H 1.07992 * 119.99992 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99884 * 180.02562 * 7 6 5 10 10 N 1.31631 * 119.99936 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00306 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46834 * 89.99539 * 11 9 7 13 13 H 1.48492 * 109.47395 * 209.99897 * 11 9 7 14 14 H 1.48499 * 109.46843 * 330.00047 * 11 9 7 15 15 C 1.46495 * 119.99813 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.87306 * 182.38810 * 15 2 1 17 17 C 1.55144 * 110.99031 * 58.54712 * 15 2 1 18 18 C 1.54317 * 103.01744 * 206.21456 * 17 15 2 19 19 N 1.47440 * 107.23779 * 22.28181 * 18 17 15 20 20 C 1.46896 * 111.00130 * 123.25455 * 19 18 17 21 21 C 1.50700 * 109.46990 * 69.87681 * 20 19 18 22 22 C 1.35355 * 126.74735 * 95.00404 * 21 20 19 23 23 N 1.35316 * 106.17300 * 179.97438 * 22 21 20 24 24 C 1.46501 * 125.86780 * 179.97438 * 23 22 21 25 25 N 1.28712 * 108.26421 * 359.97438 * 23 22 21 26 26 N 1.28635 * 110.17901 * 0.02562 * 25 23 22 27 27 C 1.47854 * 108.56273 * 0.99043 * 19 18 17 28 28 H 1.08997 * 109.47282 * 269.99615 * 1 2 3 29 29 H 1.09000 * 109.47164 * 30.00137 * 1 2 3 30 30 H 1.09006 * 109.47144 * 149.99711 * 1 2 3 31 31 H 1.09004 * 109.47157 * 299.99603 * 5 3 2 32 32 H 1.08998 * 109.47213 * 59.99270 * 5 3 2 33 33 H 0.97000 * 120.00435 * 179.97438 * 10 9 7 34 34 H 1.09006 * 110.70631 * 87.83832 * 17 15 2 35 35 H 1.08997 * 110.70538 * 324.59602 * 17 15 2 36 36 H 1.09007 * 109.89145 * 262.87996 * 18 17 15 37 37 H 1.08999 * 110.02275 * 141.76993 * 18 17 15 38 38 H 1.09003 * 109.47011 * 309.88104 * 20 19 18 39 39 H 1.08998 * 109.47698 * 189.88022 * 20 19 18 40 40 H 1.07996 * 126.91346 * 359.70799 * 22 21 20 41 41 H 1.08997 * 109.47028 * 89.99809 * 24 23 22 42 42 H 1.09000 * 109.46921 * 209.99714 * 24 23 22 43 43 H 1.09000 * 109.46674 * 329.99600 * 24 23 22 44 44 H 1.09001 * 110.37310 * 94.73160 * 27 19 18 45 45 H 1.08998 * 110.37470 * 217.07178 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3762 5.0304 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2265 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 0.4263 8.3317 1.4039 13 1 1.3617 9.1031 -0.6962 14 1 -0.5101 7.5616 -0.6962 15 6 2.1975 -1.2687 -0.0006 16 1 3.2729 -1.0963 0.0419 17 6 1.8207 -2.1273 -1.2366 18 6 2.0937 -3.5679 -0.7554 19 7 2.0468 -3.5526 0.7182 20 6 1.0525 -4.5087 1.2233 21 6 1.5369 -5.9143 0.9769 22 6 2.2080 -6.7039 1.8476 23 7 2.4346 -7.8707 1.2008 24 6 3.1340 -9.0349 1.7501 25 7 1.9300 -7.7819 0.0201 26 7 1.3874 -6.6273 -0.1450 27 6 1.7347 -2.1781 1.1649 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 0.7584 2.5303 -0.8892 32 1 0.7590 2.5298 0.8907 33 1 3.5667 7.6331 0.0024 34 1 2.4558 -1.8783 -2.0869 35 1 0.7683 -1.9983 -1.4892 36 1 3.0790 -3.8909 -1.0916 37 1 1.3302 -4.2421 -1.1437 38 1 0.1053 -4.3550 0.7063 39 1 0.9116 -4.3553 2.2932 40 1 2.5067 -6.4517 2.8543 41 1 2.4158 -9.6925 2.2397 42 1 3.6299 -9.5747 0.9434 43 1 3.8767 -8.7034 2.4758 44 1 0.6631 -2.0670 1.3305 45 1 2.2867 -1.9401 2.0741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753429216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:58 Heat of formation + Delta-G solvation = 85.381762 kcal Electronic energy + Delta-G solvation = -26283.127809 eV Core-core repulsion = 22464.966077 eV Total energy + Delta-G solvation = -3818.161732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.57710 -40.09685 -38.43990 -35.53396 -34.81776 -32.81048 -32.42060 -30.65473 -29.55857 -28.58959 -27.98302 -26.83523 -25.83491 -25.41889 -22.53397 -21.90568 -21.35635 -20.72164 -19.06859 -17.73654 -17.58289 -17.09864 -16.91395 -16.26215 -15.76138 -15.34618 -15.14849 -14.97442 -14.79659 -14.49938 -13.91013 -13.70709 -13.67015 -13.62973 -13.26361 -13.18523 -12.98881 -12.72241 -12.53954 -12.26804 -12.06210 -11.87177 -11.67127 -11.63694 -11.43736 -11.07511 -11.05577 -11.01572 -10.76004 -10.70056 -10.43314 -9.80090 -9.59829 -9.35845 -9.05828 -8.61835 -8.48776 -8.21604 -6.49198 -6.20787 -3.91375 1.23720 1.96956 2.14799 2.88500 3.03761 3.22812 3.25643 3.30604 3.56836 3.83376 3.99669 4.15687 4.21031 4.40675 4.42798 4.47267 4.62551 4.72113 4.73913 4.90904 5.01762 5.03229 5.06672 5.12125 5.14286 5.23151 5.27081 5.40156 5.48186 5.53504 5.59240 5.65178 5.75181 5.78451 5.85241 5.90904 5.98827 6.12179 6.13954 6.17304 6.55080 6.72847 6.78779 7.53000 7.60385 8.17209 8.35906 8.55667 9.24426 10.86610 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.042091 B = 0.001752 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.068726 B =15979.542181 C =16136.575977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.615 5.615 3 C 0.535 3.465 4 O -0.514 6.514 5 C -0.149 4.149 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.136 3.864 16 H 0.116 0.884 17 C -0.154 4.154 18 C 0.046 3.954 19 N -0.523 5.523 20 C 0.137 3.863 21 C -0.011 4.011 22 C -0.032 4.032 23 N -0.297 5.297 24 C 0.082 3.918 25 N -0.089 5.089 26 N -0.262 5.262 27 C 0.035 3.965 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.191 0.809 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 -30.538 5.574 31.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.351 5.351 3 C 0.323 3.677 4 O -0.388 6.388 5 C -0.300 4.300 6 S 0.165 5.835 7 C -0.684 4.684 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.031 3.969 16 H 0.134 0.866 17 C -0.194 4.194 18 C -0.082 4.082 19 N -0.248 5.248 20 C 0.007 3.993 21 C -0.150 4.150 22 C -0.184 4.184 23 N -0.090 5.090 24 C -0.060 4.060 25 N -0.068 5.068 26 N -0.130 5.130 27 C -0.094 4.094 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.208 0.792 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.268 -31.311 4.440 31.793 hybrid contribution -2.736 1.441 0.839 3.204 sum -6.004 -29.870 5.279 30.921 Atomic orbital electron populations 1.21758 0.79938 1.03170 1.01750 1.47736 1.06619 1.05179 1.75553 1.20363 0.87946 0.84492 0.74874 1.90694 1.13746 1.86696 1.47661 1.23556 1.04545 0.97150 1.04742 1.85410 1.08038 0.93324 1.96701 1.22860 0.94310 0.92224 1.58959 0.90946 1.24989 0.95662 0.98363 0.94544 1.70019 1.11736 1.21652 1.46842 0.86170 0.80272 0.80738 0.78334 1.20280 1.20755 1.19709 1.22074 0.98955 0.82487 0.93381 0.86574 1.23167 1.02331 0.94901 0.98961 1.22791 1.02604 0.95974 0.86819 1.63552 1.46365 1.05008 1.09858 1.20413 0.92978 0.84893 1.01021 1.21766 1.03817 0.98169 0.91231 1.23383 1.05878 0.86988 1.02125 1.47232 1.37925 1.13206 1.10653 1.22268 0.97496 0.85315 1.00891 1.78309 1.12342 1.15867 1.00325 1.75035 1.17043 0.98382 1.22513 1.23334 0.99988 0.86964 0.99070 0.92667 0.90444 0.91411 0.89234 0.89221 0.92190 0.90136 0.90908 0.90601 0.91271 0.92605 0.88962 0.79199 0.89115 0.88032 0.88202 0.92780 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 8.92 59.85 0.53 1.33 16 2 N -0.62 -8.65 2.91 -171.49 -0.50 -9.14 16 3 C 0.54 10.18 7.69 -10.99 -0.08 10.09 16 4 O -0.51 -11.79 15.24 5.56 0.08 -11.71 16 5 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 6 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 11 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.14 1.72 3.45 -65.80 -0.23 1.49 16 16 H 0.12 1.78 7.01 -51.93 -0.36 1.42 16 17 C -0.15 -1.68 6.50 -24.91 -0.16 -1.84 16 18 C 0.05 0.48 6.39 -2.84 -0.02 0.46 16 19 N -0.52 -5.17 5.15 -232.69 -1.20 -6.37 16 20 C 0.14 1.12 5.11 -4.98 -0.03 1.10 16 21 C -0.01 -0.11 6.21 -82.78 -0.51 -0.62 16 22 C -0.03 -0.23 11.55 -17.04 -0.20 -0.42 16 23 N -0.30 -2.15 3.74 -68.06 -0.25 -2.41 16 24 C 0.08 0.17 11.39 59.85 0.68 0.85 16 25 N -0.09 -0.97 13.16 60.35 0.79 -0.18 16 26 N -0.26 -3.12 11.82 33.29 0.39 -2.72 16 27 C 0.03 0.35 6.25 -2.30 -0.01 0.34 16 28 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.07 0.57 6.32 -51.93 -0.33 0.24 16 31 H 0.09 1.68 7.40 -51.91 -0.38 1.30 16 32 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.73 6.30 -51.93 -0.33 0.40 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.74 6.83 -51.93 -0.35 0.39 16 38 H 0.06 0.46 7.96 -51.93 -0.41 0.05 16 39 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 42 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.10 -0.02 8.14 -51.93 -0.42 -0.45 16 44 H 0.05 0.48 6.72 -51.93 -0.35 0.13 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -37.55 382.14 -7.70 -45.25 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.62 Total: -2.51 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 0.34 Total: -3.00 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.03 Total: -46.26 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.55 -7.70 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753429216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.633 kcal (2) G-P(sol) polarization free energy of solvation -37.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds