Wall clock time and date at job start Tue Mar 31 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 119.99602 * 2 1 4 4 O 1.21279 * 119.99369 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00473 * 0.02562 * 3 2 1 6 6 S 1.81000 * 109.47221 * 179.97438 * 5 3 2 7 7 C 1.76203 * 99.99739 * 180.02562 * 6 5 3 8 8 H 1.07992 * 119.99992 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99884 * 180.02562 * 7 6 5 10 10 N 1.31631 * 119.99936 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00306 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46834 * 89.99539 * 11 9 7 13 13 H 1.48492 * 109.47395 * 209.99897 * 11 9 7 14 14 H 1.48499 * 109.46843 * 330.00047 * 11 9 7 15 15 C 1.46495 * 119.99813 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.87306 * 182.38810 * 15 2 1 17 17 C 1.55144 * 110.99031 * 58.54712 * 15 2 1 18 18 C 1.54317 * 103.01744 * 206.21456 * 17 15 2 19 19 N 1.47440 * 107.23779 * 22.28181 * 18 17 15 20 20 C 1.46896 * 111.00130 * 123.25455 * 19 18 17 21 21 C 1.50700 * 109.46990 * 69.87681 * 20 19 18 22 22 C 1.35355 * 126.74735 * 95.00404 * 21 20 19 23 23 N 1.35316 * 106.17300 * 179.97438 * 22 21 20 24 24 C 1.46501 * 125.86780 * 179.97438 * 23 22 21 25 25 N 1.28712 * 108.26421 * 359.97438 * 23 22 21 26 26 N 1.28635 * 110.17901 * 0.02562 * 25 23 22 27 27 C 1.47854 * 108.56273 * 0.99043 * 19 18 17 28 28 H 1.08997 * 109.47282 * 269.99615 * 1 2 3 29 29 H 1.09000 * 109.47164 * 30.00137 * 1 2 3 30 30 H 1.09006 * 109.47144 * 149.99711 * 1 2 3 31 31 H 1.09004 * 109.47157 * 299.99603 * 5 3 2 32 32 H 1.08998 * 109.47213 * 59.99270 * 5 3 2 33 33 H 0.97000 * 120.00435 * 179.97438 * 10 9 7 34 34 H 1.09006 * 110.70631 * 87.83832 * 17 15 2 35 35 H 1.08997 * 110.70538 * 324.59602 * 17 15 2 36 36 H 1.09007 * 109.89145 * 262.87996 * 18 17 15 37 37 H 1.08999 * 110.02275 * 141.76993 * 18 17 15 38 38 H 1.09003 * 109.47011 * 309.88104 * 20 19 18 39 39 H 1.08998 * 109.47698 * 189.88022 * 20 19 18 40 40 H 1.07996 * 126.91346 * 359.70799 * 22 21 20 41 41 H 1.08997 * 109.47028 * 89.99809 * 24 23 22 42 42 H 1.09000 * 109.46921 * 209.99714 * 24 23 22 43 43 H 1.09000 * 109.46674 * 329.99600 * 24 23 22 44 44 H 1.09001 * 110.37310 * 94.73160 * 27 19 18 45 45 H 1.08998 * 110.37470 * 217.07178 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3762 5.0304 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2265 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 0.4263 8.3317 1.4039 13 1 1.3617 9.1031 -0.6962 14 1 -0.5101 7.5616 -0.6962 15 6 2.1975 -1.2687 -0.0006 16 1 3.2729 -1.0963 0.0419 17 6 1.8207 -2.1273 -1.2366 18 6 2.0937 -3.5679 -0.7554 19 7 2.0468 -3.5526 0.7182 20 6 1.0525 -4.5087 1.2233 21 6 1.5369 -5.9143 0.9769 22 6 2.2080 -6.7039 1.8476 23 7 2.4346 -7.8707 1.2008 24 6 3.1340 -9.0349 1.7501 25 7 1.9300 -7.7819 0.0201 26 7 1.3874 -6.6273 -0.1450 27 6 1.7347 -2.1781 1.1649 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 0.7584 2.5303 -0.8892 32 1 0.7590 2.5298 0.8907 33 1 3.5667 7.6331 0.0024 34 1 2.4558 -1.8783 -2.0869 35 1 0.7683 -1.9983 -1.4892 36 1 3.0790 -3.8909 -1.0916 37 1 1.3302 -4.2421 -1.1437 38 1 0.1053 -4.3550 0.7063 39 1 0.9116 -4.3553 2.2932 40 1 2.5067 -6.4517 2.8543 41 1 2.4158 -9.6925 2.2397 42 1 3.6299 -9.5747 0.9434 43 1 3.8767 -8.7034 2.4758 44 1 0.6631 -2.0670 1.3305 45 1 2.2867 -1.9401 2.0741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753429216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:57 Heat of formation + Delta-G solvation = 57.025591 kcal Electronic energy + Delta-G solvation = -26284.357425 eV Core-core repulsion = 22464.966077 eV Total energy + Delta-G solvation = -3819.391348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.16642 -41.25797 -39.57606 -36.56047 -35.50712 -34.57224 -33.60647 -31.59356 -30.69470 -29.34509 -28.67771 -27.79247 -27.63396 -26.57262 -23.13501 -22.57454 -22.46712 -21.47510 -20.35801 -19.57821 -18.39552 -18.02390 -17.64544 -17.23442 -16.86855 -16.71857 -16.67927 -16.19348 -15.80482 -15.52790 -15.09888 -14.59527 -14.52231 -14.38601 -14.26442 -14.09913 -13.94719 -13.80884 -13.53497 -13.31777 -13.18924 -13.11933 -12.88409 -12.72425 -12.59309 -12.52231 -12.40884 -12.34172 -11.77457 -11.70403 -11.57331 -11.12963 -10.98332 -10.90019 -10.25191 -10.21211 -9.68584 -9.34179 -8.66159 -8.33301 -6.11715 0.69413 1.25325 1.43012 1.43650 1.49150 1.56167 1.57818 1.62864 2.06057 2.28619 3.00863 3.10083 3.27453 3.40703 3.55068 3.66914 3.79127 3.82949 4.04664 4.08689 4.16058 4.22083 4.24441 4.28628 4.35842 4.37543 4.48481 4.53635 4.60747 4.65791 4.66001 4.71319 4.80795 4.91606 4.95141 5.00390 5.06814 5.15857 5.19028 5.43035 5.52480 5.72803 5.89868 6.02170 6.20898 6.26335 7.07852 7.13691 7.54162 8.75925 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.042091 B = 0.001752 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.068726 B =15979.542181 C =16136.575977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.600 5.600 3 C 0.533 3.467 4 O -0.566 6.566 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.258 1.258 15 C 0.130 3.870 16 H 0.082 0.918 17 C -0.145 4.145 18 C 0.057 3.943 19 N -0.529 5.529 20 C 0.140 3.860 21 C -0.034 4.034 22 C -0.020 4.020 23 N -0.291 5.291 24 C 0.070 3.930 25 N -0.128 5.128 26 N -0.301 5.301 27 C 0.048 3.952 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.271 0.729 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.118 0.882 40 H 0.229 0.771 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 -31.664 7.120 33.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.333 5.333 3 C 0.321 3.679 4 O -0.444 6.444 5 C -0.273 4.273 6 S 0.073 5.927 7 C -0.693 4.693 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.181 1.181 15 C 0.025 3.975 16 H 0.100 0.900 17 C -0.184 4.184 18 C -0.071 4.071 19 N -0.254 5.254 20 C 0.011 3.989 21 C -0.173 4.173 22 C -0.173 4.173 23 N -0.084 5.084 24 C -0.069 4.069 25 N -0.107 5.107 26 N -0.167 5.167 27 C -0.081 4.081 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.245 0.755 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.095 0.905 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.991 -32.519 5.976 33.602 hybrid contribution -1.891 1.584 0.407 2.499 sum -7.882 -30.936 6.383 32.556 Atomic orbital electron populations 1.22111 0.77037 1.04653 1.03707 1.47677 1.08277 1.04037 1.73290 1.20180 0.87264 0.85453 0.75029 1.90680 1.15808 1.87408 1.50522 1.23369 1.02658 0.94727 1.06520 1.85619 1.12721 0.97359 1.97035 1.23199 0.94651 0.92603 1.58854 0.89811 1.26132 0.97577 1.01694 0.93733 1.70189 1.14145 1.22447 1.48022 0.84946 0.77886 0.76292 0.78812 1.19243 1.20410 1.18142 1.22114 0.97219 0.82315 0.95853 0.90003 1.23099 1.03014 0.94620 0.97689 1.22615 1.01641 0.95361 0.87528 1.63509 1.47565 1.05166 1.09163 1.20500 0.92205 0.83832 1.02404 1.22098 1.04983 0.98919 0.91339 1.23978 1.04068 0.86200 1.03049 1.47643 1.36714 1.14350 1.09704 1.22709 0.98361 0.84328 1.01528 1.78221 1.14096 1.16077 1.02326 1.74960 1.18320 0.99217 1.24220 1.23207 1.01132 0.86255 0.97468 0.90403 0.90317 0.88702 0.87384 0.87161 0.92025 0.91340 0.89166 0.92275 0.91329 0.92557 0.86365 0.75490 0.87257 0.87899 0.85376 0.90502 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 8.92 127.77 1.14 2.28 16 2 N -0.60 -15.95 2.91 -814.88 -2.37 -18.32 16 3 C 0.53 20.27 7.69 87.66 0.67 20.94 16 4 O -0.57 -27.04 15.24 -3.03 -0.05 -27.08 16 5 C -0.12 -4.86 4.71 71.23 0.34 -4.52 16 6 S -0.15 -8.65 20.57 -56.49 -1.16 -9.82 16 7 C -0.55 -31.12 9.50 67.95 0.65 -30.47 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 C 0.01 0.76 5.49 84.86 0.47 1.23 16 10 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 11 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 15 C 0.13 3.19 3.45 46.38 0.16 3.35 16 16 H 0.08 2.63 7.01 -2.39 -0.02 2.61 16 17 C -0.15 -3.02 6.50 31.78 0.21 -2.81 16 18 C 0.06 1.16 6.39 86.65 0.55 1.71 16 19 N -0.53 -9.56 5.15 -890.10 -4.58 -14.14 16 20 C 0.14 1.95 5.11 85.56 0.44 2.39 16 21 C -0.03 -0.58 6.21 41.60 0.26 -0.33 16 22 C -0.02 -0.23 11.55 83.49 0.96 0.73 16 23 N -0.29 -3.74 3.74 -369.23 -1.38 -5.12 16 24 C 0.07 0.13 11.39 127.77 1.46 1.58 16 25 N -0.13 -2.77 13.16 37.02 0.49 -2.28 16 26 N -0.30 -7.07 11.82 -48.60 -0.57 -7.64 16 27 C 0.05 0.86 6.25 86.77 0.54 1.40 16 28 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 29 H 0.08 1.39 6.44 -2.39 -0.02 1.37 16 30 H 0.09 1.17 6.32 -2.38 -0.02 1.16 16 31 H 0.11 3.90 7.40 -2.39 -0.02 3.88 16 32 H 0.11 3.93 8.11 -2.40 -0.02 3.91 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.09 1.57 6.30 -2.39 -0.02 1.55 16 36 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.07 1.43 6.83 -2.39 -0.02 1.41 16 38 H 0.06 0.79 7.96 -2.39 -0.02 0.77 16 39 H 0.12 1.01 8.07 -2.39 -0.02 0.99 16 40 H 0.23 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.08 1.06 6.72 -2.39 -0.02 1.04 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -86.74 382.14 1.52 -85.22 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.00 Total: 12.11 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 7.84 Total: -2.51 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -8.14 Total: -103.42 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -86.74 1.52 -85.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753429216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.241 kcal (2) G-P(sol) polarization free energy of solvation -86.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds