Wall clock time and date at job start Tue Mar 31 2020 22:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 120.00092 * 2 1 4 4 O 1.21278 * 120.00033 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99669 * 0.02562 * 3 2 1 6 6 S 1.81000 * 109.46909 * 179.97438 * 5 3 2 7 7 C 1.76200 * 100.00087 * 179.97438 * 6 5 3 8 8 H 1.08002 * 119.99584 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00039 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00349 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99961 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47129 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47349 * 119.99986 * 11 9 7 14 14 H 1.48502 * 109.46943 * 240.00246 * 11 9 7 15 15 C 1.46501 * 120.00106 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.64078 * 178.30005 * 15 2 1 17 17 C 1.54594 * 110.72436 * 301.45145 * 15 2 1 18 18 C 1.53993 * 105.13796 * 140.31422 * 17 15 2 19 19 N 1.47898 * 107.05971 * 1.22651 * 18 17 15 20 20 C 1.46902 * 111.00162 * 214.15487 * 19 18 17 21 21 C 1.50703 * 109.46858 * 69.87574 * 20 19 18 22 22 N 1.30523 * 126.34553 * 269.68599 * 21 20 19 23 23 N 1.28588 * 109.67223 * 180.26646 * 22 21 20 24 24 C 1.30519 * 109.67901 * 0.02562 * 23 22 21 25 25 N 1.35495 * 126.34870 * 90.00413 * 21 20 19 26 26 C 1.46501 * 126.97920 * 359.72917 * 25 21 20 27 27 C 1.48536 * 105.82284 * 334.66955 * 19 18 17 28 28 H 1.09000 * 109.47097 * 270.00122 * 1 2 3 29 29 H 1.09000 * 109.47168 * 29.99823 * 1 2 3 30 30 H 1.08993 * 109.47512 * 149.99944 * 1 2 3 31 31 H 1.09004 * 109.47258 * 299.99849 * 5 3 2 32 32 H 1.09003 * 109.47319 * 60.00170 * 5 3 2 33 33 H 0.97003 * 120.00463 * 179.97438 * 10 9 7 34 34 H 1.09000 * 110.30556 * 21.40065 * 17 15 2 35 35 H 1.08994 * 110.39373 * 259.27345 * 17 15 2 36 36 H 1.08998 * 109.91679 * 241.87573 * 18 17 15 37 37 H 1.08998 * 110.08215 * 120.67135 * 18 17 15 38 38 H 1.08994 * 109.47075 * 309.87594 * 20 19 18 39 39 H 1.08999 * 109.46855 * 189.87399 * 20 19 18 40 40 H 1.07994 * 126.34922 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.46777 * 89.99973 * 26 25 21 42 42 H 1.08994 * 109.47180 * 210.00105 * 26 25 21 43 43 H 1.09004 * 109.47136 * 330.00831 * 26 25 21 44 44 H 1.08993 * 110.67178 * 157.63829 * 27 19 18 45 45 H 1.08997 * 110.66475 * 280.77523 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4415 5.2083 0.0010 8 1 0.3762 5.0305 0.0011 9 6 1.9282 6.5081 0.0009 10 7 3.2265 6.7247 0.0003 11 14 0.7407 7.9501 0.0014 12 1 -0.6547 7.4422 0.0014 13 1 0.9669 8.7772 1.2138 14 1 0.9659 8.7772 -1.2112 15 6 2.1975 -1.2687 -0.0006 16 1 3.2726 -1.0917 -0.0307 17 6 1.8177 -2.1203 1.2325 18 6 1.7355 -3.5673 0.7121 19 7 2.0810 -3.5316 -0.7255 20 6 1.3171 -4.5374 -1.4757 21 6 -0.1327 -4.1296 -1.5297 22 7 -1.0595 -4.4520 -0.6692 23 7 -2.1816 -3.9367 -1.0281 24 6 -2.0219 -3.2625 -2.1342 25 7 -0.7169 -3.3653 -2.4839 26 6 -0.0691 -2.7710 -3.6559 27 6 1.7510 -2.1590 -1.1874 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7583 2.5303 -0.8892 32 1 0.7590 2.5299 0.8908 33 1 3.5667 7.6332 -0.0002 34 1 0.8519 -1.8047 1.6272 35 1 2.5853 -2.0380 2.0020 36 1 0.7237 -3.9514 0.8413 37 1 2.4436 -4.1987 1.2487 38 1 1.4044 -5.5041 -0.9799 39 1 1.7117 -4.6118 -2.4890 40 1 -2.7876 -2.7221 -2.6706 41 1 -0.1216 -3.4679 -4.4923 42 1 -0.5786 -1.8449 -3.9220 43 1 0.9748 -2.5583 -3.4252 44 1 2.3131 -1.9104 -2.0875 45 1 0.6797 -2.0590 -1.3616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753430822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:49 Heat of formation + Delta-G solvation = 75.603563 kcal Electronic energy + Delta-G solvation = -27791.282111 eV Core-core repulsion = 23972.696364 eV Total energy + Delta-G solvation = -3818.585747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.63471 -40.22025 -38.57811 -35.63223 -35.29049 -32.81692 -32.46713 -30.43342 -29.64466 -28.51864 -27.97019 -27.00528 -25.91813 -25.47641 -22.81742 -22.33458 -21.27901 -20.52054 -19.20313 -17.82262 -17.66212 -17.48816 -16.79568 -16.23214 -15.71417 -15.62935 -15.40922 -14.84755 -14.77889 -14.63655 -14.43015 -13.94664 -13.81349 -13.60864 -13.45898 -13.14338 -13.03374 -12.65910 -12.38035 -12.32822 -12.05663 -11.94127 -11.88918 -11.72447 -11.57257 -11.10260 -11.06009 -10.87793 -10.78640 -10.72259 -10.54587 -9.83856 -9.69625 -9.43996 -9.11105 -9.03117 -8.62959 -8.27077 -6.54668 -6.25488 -3.96478 1.34388 2.02721 2.48388 2.77921 2.94513 3.18591 3.21288 3.27706 3.46777 3.66316 3.84815 4.04438 4.16323 4.19661 4.30551 4.36016 4.49625 4.59680 4.78940 4.82027 4.85293 4.91317 5.03883 5.07095 5.09799 5.13052 5.14822 5.24573 5.34631 5.43987 5.49875 5.55309 5.63259 5.69749 5.73622 5.82433 5.87067 5.97108 6.06667 6.28110 6.37289 6.42856 6.60714 7.43014 7.56081 8.31467 8.33860 8.46362 9.19967 10.81944 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.002606 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.840855 B =10743.113878 C =11492.515985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.617 5.617 3 C 0.535 3.465 4 O -0.512 6.512 5 C -0.150 4.150 6 S -0.060 6.060 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.143 3.857 16 H 0.118 0.882 17 C -0.142 4.142 18 C 0.028 3.972 19 N -0.495 5.495 20 C 0.129 3.871 21 C 0.141 3.859 22 N -0.285 5.285 23 N -0.296 5.296 24 C 0.150 3.850 25 N -0.471 5.471 26 C 0.062 3.938 27 C 0.011 3.989 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.268 0.732 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.218 0.782 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 -23.116 -7.172 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.352 5.352 3 C 0.323 3.677 4 O -0.386 6.386 5 C -0.300 4.300 6 S 0.166 5.834 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.206 1.206 15 C 0.038 3.962 16 H 0.136 0.864 17 C -0.181 4.181 18 C -0.100 4.100 19 N -0.218 5.218 20 C -0.002 4.002 21 C -0.127 4.127 22 N -0.126 5.126 23 N -0.135 5.135 24 C -0.137 4.137 25 N -0.163 5.163 26 C -0.081 4.081 27 C -0.118 4.118 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.235 0.765 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.123 -23.697 -6.060 25.215 hybrid contribution -2.750 1.750 -1.181 3.467 sum -8.873 -21.947 -7.241 24.756 Atomic orbital electron populations 1.21690 0.80065 1.02495 1.01934 1.47806 1.06479 1.05278 1.75677 1.20379 0.87958 0.84453 0.74861 1.90697 1.13664 1.86660 1.47561 1.23558 1.04575 0.97184 1.04691 1.85411 1.07965 0.93299 1.96700 1.22890 0.94307 0.92182 1.58965 0.90916 1.24992 0.95679 0.98386 0.94503 1.70024 1.11732 1.21607 1.46845 0.86118 0.80330 0.81115 0.77942 1.19623 1.20520 1.20553 1.21827 0.98986 0.82400 0.93005 0.86406 1.22768 1.02885 0.93951 0.98501 1.23016 1.01714 0.97379 0.87866 1.65089 1.49829 1.03025 1.03820 1.21069 0.80071 0.97731 1.01340 1.25958 1.00019 0.97641 0.89129 1.74284 0.95351 1.20221 1.22787 1.74278 1.17752 1.11053 1.10425 1.26534 0.85902 1.03826 0.97472 1.46377 1.09469 1.38855 1.21573 1.22337 1.00228 0.99927 0.85627 1.23893 1.00002 0.88526 0.99392 0.92563 0.90417 0.92281 0.89347 0.89241 0.92199 0.90900 0.90081 0.91420 0.89509 0.86967 0.88460 0.76541 0.89574 0.88472 0.88524 0.89267 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 9.15 59.84 0.55 1.45 16 2 N -0.62 -8.55 2.88 -171.81 -0.50 -9.04 16 3 C 0.54 9.94 7.69 -10.98 -0.08 9.85 16 4 O -0.51 -11.42 15.23 5.56 0.08 -11.33 16 5 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 6 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 7 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 11 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 15 C 0.14 1.75 3.47 -66.07 -0.23 1.52 16 16 H 0.12 1.73 6.99 -51.93 -0.36 1.36 16 17 C -0.14 -1.54 6.55 -25.38 -0.17 -1.70 16 18 C 0.03 0.26 6.46 -2.76 -0.02 0.24 16 19 N -0.49 -4.29 5.54 -231.90 -1.28 -5.58 16 20 C 0.13 0.90 5.68 -4.97 -0.03 0.87 16 21 C 0.14 1.24 5.28 -154.98 -0.82 0.42 16 22 N -0.28 -3.37 11.16 32.80 0.37 -3.00 16 23 N -0.30 -3.46 12.21 29.69 0.36 -3.09 16 24 C 0.15 1.17 12.74 -89.95 -1.15 0.02 16 25 N -0.47 -3.19 2.36 -122.69 -0.29 -3.48 16 26 C 0.06 0.21 10.15 59.85 0.61 0.82 16 27 C 0.01 0.10 4.43 -1.90 -0.01 0.09 16 28 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 29 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 30 H 0.06 0.59 6.06 -51.93 -0.31 0.28 16 31 H 0.09 1.61 7.40 -51.91 -0.38 1.23 16 32 H 0.09 1.69 8.11 -51.91 -0.42 1.26 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 34 H 0.07 0.83 6.99 -51.93 -0.36 0.46 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.71 6.23 -51.93 -0.32 0.38 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.10 0.48 7.87 -51.93 -0.41 0.07 16 40 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.10 0.36 5.41 -51.93 -0.28 0.08 16 44 H 0.09 0.81 7.34 -51.93 -0.38 0.43 16 45 H 0.06 0.53 2.77 -51.93 -0.14 0.38 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -36.72 369.70 -9.37 -46.09 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.21 Total: -1.30 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.98 Total: -1.99 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.61 Total: -49.34 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.72 -9.37 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753430822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.697 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds