Wall clock time and date at job start Tue Mar 31 2020 22:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 120.00092 * 2 1 4 4 O 1.21278 * 120.00033 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99669 * 0.02562 * 3 2 1 6 6 S 1.81000 * 109.46909 * 179.97438 * 5 3 2 7 7 C 1.76200 * 100.00087 * 179.97438 * 6 5 3 8 8 H 1.08002 * 119.99584 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00039 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00349 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99961 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47129 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47349 * 119.99986 * 11 9 7 14 14 H 1.48502 * 109.46943 * 240.00246 * 11 9 7 15 15 C 1.46501 * 120.00106 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.64078 * 178.30005 * 15 2 1 17 17 C 1.54594 * 110.72436 * 301.45145 * 15 2 1 18 18 C 1.53993 * 105.13796 * 140.31422 * 17 15 2 19 19 N 1.47898 * 107.05971 * 1.22651 * 18 17 15 20 20 C 1.46902 * 111.00162 * 214.15487 * 19 18 17 21 21 C 1.50703 * 109.46858 * 69.87574 * 20 19 18 22 22 N 1.30523 * 126.34553 * 269.68599 * 21 20 19 23 23 N 1.28588 * 109.67223 * 180.26646 * 22 21 20 24 24 C 1.30519 * 109.67901 * 0.02562 * 23 22 21 25 25 N 1.35495 * 126.34870 * 90.00413 * 21 20 19 26 26 C 1.46501 * 126.97920 * 359.72917 * 25 21 20 27 27 C 1.48536 * 105.82284 * 334.66955 * 19 18 17 28 28 H 1.09000 * 109.47097 * 270.00122 * 1 2 3 29 29 H 1.09000 * 109.47168 * 29.99823 * 1 2 3 30 30 H 1.08993 * 109.47512 * 149.99944 * 1 2 3 31 31 H 1.09004 * 109.47258 * 299.99849 * 5 3 2 32 32 H 1.09003 * 109.47319 * 60.00170 * 5 3 2 33 33 H 0.97003 * 120.00463 * 179.97438 * 10 9 7 34 34 H 1.09000 * 110.30556 * 21.40065 * 17 15 2 35 35 H 1.08994 * 110.39373 * 259.27345 * 17 15 2 36 36 H 1.08998 * 109.91679 * 241.87573 * 18 17 15 37 37 H 1.08998 * 110.08215 * 120.67135 * 18 17 15 38 38 H 1.08994 * 109.47075 * 309.87594 * 20 19 18 39 39 H 1.08999 * 109.46855 * 189.87399 * 20 19 18 40 40 H 1.07994 * 126.34922 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.46777 * 89.99973 * 26 25 21 42 42 H 1.08994 * 109.47180 * 210.00105 * 26 25 21 43 43 H 1.09004 * 109.47136 * 330.00831 * 26 25 21 44 44 H 1.08993 * 110.67178 * 157.63829 * 27 19 18 45 45 H 1.08997 * 110.66475 * 280.77523 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4415 5.2083 0.0010 8 1 0.3762 5.0305 0.0011 9 6 1.9282 6.5081 0.0009 10 7 3.2265 6.7247 0.0003 11 14 0.7407 7.9501 0.0014 12 1 -0.6547 7.4422 0.0014 13 1 0.9669 8.7772 1.2138 14 1 0.9659 8.7772 -1.2112 15 6 2.1975 -1.2687 -0.0006 16 1 3.2726 -1.0917 -0.0307 17 6 1.8177 -2.1203 1.2325 18 6 1.7355 -3.5673 0.7121 19 7 2.0810 -3.5316 -0.7255 20 6 1.3171 -4.5374 -1.4757 21 6 -0.1327 -4.1296 -1.5297 22 7 -1.0595 -4.4520 -0.6692 23 7 -2.1816 -3.9367 -1.0281 24 6 -2.0219 -3.2625 -2.1342 25 7 -0.7169 -3.3653 -2.4839 26 6 -0.0691 -2.7710 -3.6559 27 6 1.7510 -2.1590 -1.1874 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7583 2.5303 -0.8892 32 1 0.7590 2.5299 0.8908 33 1 3.5667 7.6332 -0.0002 34 1 0.8519 -1.8047 1.6272 35 1 2.5853 -2.0380 2.0020 36 1 0.7237 -3.9514 0.8413 37 1 2.4436 -4.1987 1.2487 38 1 1.4044 -5.5041 -0.9799 39 1 1.7117 -4.6118 -2.4890 40 1 -2.7876 -2.7221 -2.6706 41 1 -0.1216 -3.4679 -4.4923 42 1 -0.5786 -1.8449 -3.9220 43 1 0.9748 -2.5583 -3.4252 44 1 2.3131 -1.9104 -2.0875 45 1 0.6797 -2.0590 -1.3616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753430822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:49 Heat of formation + Delta-G solvation = 50.209845 kcal Electronic energy + Delta-G solvation = -27792.383265 eV Core-core repulsion = 23972.696364 eV Total energy + Delta-G solvation = -3819.686901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.24128 -41.34947 -39.67576 -36.63248 -35.99906 -34.59419 -33.67485 -31.41817 -30.64851 -29.46749 -28.53840 -27.95558 -27.67065 -26.63610 -23.43298 -23.10165 -22.30890 -21.16597 -20.46243 -19.63819 -18.56302 -18.19840 -17.87954 -17.07751 -16.88935 -16.78861 -16.60161 -16.24909 -16.06065 -15.41958 -15.29751 -15.11766 -14.62299 -14.54624 -14.38226 -14.21010 -14.16934 -13.71502 -13.60980 -13.34357 -13.16066 -12.98748 -12.92336 -12.78149 -12.62422 -12.58252 -12.49746 -12.43744 -11.76118 -11.69372 -11.34671 -11.16704 -11.09023 -10.95738 -10.36587 -10.28222 -9.82398 -9.73163 -8.68586 -8.35633 -6.14021 0.78820 1.22127 1.40957 1.43620 1.48607 1.55689 1.57698 1.82488 1.96852 2.25918 2.89680 2.98794 3.20909 3.26097 3.41999 3.55892 3.68234 3.73679 3.85098 3.96159 3.97079 4.03036 4.14295 4.20008 4.25244 4.33340 4.38609 4.44455 4.52103 4.54306 4.58284 4.66106 4.71582 4.75510 4.85653 4.90416 4.96760 5.06856 5.15688 5.36711 5.41240 5.65565 5.73986 5.90358 6.14944 6.19387 7.05124 7.06040 7.70699 8.73756 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.002606 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.840855 B =10743.113878 C =11492.515985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.601 5.601 3 C 0.536 3.464 4 O -0.559 6.559 5 C -0.123 4.123 6 S -0.149 6.149 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.014 3.986 10 N -0.911 5.911 11 Si 0.998 3.002 12 H -0.256 1.256 13 H -0.275 1.275 14 H -0.273 1.273 15 C 0.135 3.865 16 H 0.091 0.909 17 C -0.138 4.138 18 C 0.036 3.964 19 N -0.495 5.495 20 C 0.130 3.870 21 C 0.141 3.859 22 N -0.324 5.324 23 N -0.345 5.345 24 C 0.161 3.839 25 N -0.467 5.467 26 C 0.055 3.945 27 C 0.024 3.976 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.271 0.729 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.253 0.747 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -23.651 -8.608 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.335 5.335 3 C 0.324 3.676 4 O -0.437 6.437 5 C -0.274 4.274 6 S 0.078 5.922 7 C -0.693 4.693 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.820 3.180 12 H -0.180 1.180 13 H -0.201 1.201 14 H -0.198 1.198 15 C 0.031 3.969 16 H 0.109 0.891 17 C -0.177 4.177 18 C -0.092 4.092 19 N -0.218 5.218 20 C 0.000 4.000 21 C -0.129 4.129 22 N -0.165 5.165 23 N -0.184 5.184 24 C -0.128 4.128 25 N -0.158 5.158 26 C -0.086 4.086 27 C -0.105 4.105 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.269 0.731 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.412 -24.283 -7.507 26.773 hybrid contribution -2.077 1.777 -0.764 2.838 sum -10.489 -22.507 -8.271 26.172 Atomic orbital electron populations 1.21880 0.77856 1.03752 1.02813 1.47714 1.07701 1.04434 1.73605 1.20142 0.87288 0.85235 0.74950 1.90685 1.15504 1.87289 1.50187 1.23373 1.02778 0.94917 1.06369 1.85594 1.12417 0.97128 1.97021 1.23215 0.94608 0.92609 1.58843 0.89930 1.26113 0.97565 1.01661 0.93727 1.70184 1.14082 1.22450 1.48000 0.84913 0.78213 0.76796 0.78075 1.17993 1.20083 1.19833 1.21934 0.97543 0.82075 0.95391 0.89052 1.22718 1.02413 0.94731 0.97802 1.22939 1.01563 0.96200 0.88510 1.65116 1.50258 1.02917 1.03485 1.21221 0.79142 0.97172 1.02506 1.26121 1.00155 0.97552 0.89121 1.74191 0.96122 1.21730 1.24498 1.74188 1.18423 1.13109 1.12706 1.27177 0.86819 1.02384 0.96374 1.46558 1.09195 1.38154 1.21867 1.22619 0.99994 1.01118 0.84871 1.23777 1.00314 0.88230 0.98175 0.91881 0.89491 0.90659 0.87088 0.87820 0.91974 0.91233 0.90521 0.92200 0.88503 0.86459 0.85931 0.73120 0.87589 0.86762 0.88722 0.88506 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 9.15 127.77 1.17 2.73 16 2 N -0.60 -15.97 2.88 -815.87 -2.35 -18.32 16 3 C 0.54 19.82 7.69 87.66 0.67 20.49 16 4 O -0.56 -25.69 15.23 -3.02 -0.05 -25.73 16 5 C -0.12 -4.83 4.71 71.24 0.34 -4.49 16 6 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 7 C -0.54 -30.64 9.50 67.95 0.65 -30.00 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 C 0.01 0.80 5.49 84.86 0.47 1.26 16 10 N -0.91 -55.34 13.22 21.65 0.29 -55.06 16 11 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 12 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 13 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 C 0.13 3.23 3.47 46.20 0.16 3.39 16 16 H 0.09 2.74 6.99 -2.39 -0.02 2.72 16 17 C -0.14 -2.89 6.55 31.47 0.21 -2.69 16 18 C 0.04 0.63 6.46 86.45 0.56 1.19 16 19 N -0.50 -7.69 5.54 -887.59 -4.91 -12.60 16 20 C 0.13 1.52 5.68 85.56 0.49 2.01 16 21 C 0.14 2.18 5.28 137.98 0.73 2.91 16 22 N -0.32 -7.34 11.16 -50.15 -0.56 -7.90 16 23 N -0.35 -7.65 12.21 -59.99 -0.73 -8.39 16 24 C 0.16 2.08 12.74 180.11 2.30 4.38 16 25 N -0.47 -4.98 2.36 -542.07 -1.28 -6.27 16 26 C 0.06 0.18 10.15 127.77 1.30 1.47 16 27 C 0.02 0.40 4.43 86.65 0.38 0.79 16 28 H 0.06 1.22 7.90 -2.39 -0.02 1.20 16 29 H 0.09 1.59 6.44 -2.39 -0.02 1.58 16 30 H 0.07 1.28 6.06 -2.39 -0.01 1.27 16 31 H 0.11 3.83 7.40 -2.39 -0.02 3.81 16 32 H 0.10 3.76 8.11 -2.39 -0.02 3.74 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.07 1.51 6.99 -2.39 -0.02 1.49 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.19 6.23 -2.39 -0.01 1.18 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.12 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.12 0.82 7.87 -2.39 -0.02 0.80 16 40 H 0.25 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.09 0.38 5.41 -2.39 -0.01 0.37 16 44 H 0.10 1.54 7.34 -2.39 -0.02 1.52 16 45 H 0.06 1.01 2.77 -2.39 -0.01 1.00 16 Total: -1.00 -83.15 369.70 1.69 -81.46 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.02 Total: 13.73 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 9.41 Total: 3.43 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -9.55 Total: -108.53 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Total: -83.15 1.69 -81.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753430822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.669 kcal (2) G-P(sol) polarization free energy of solvation -83.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds