Wall clock time and date at job start Tue Mar 31 2020 22:28:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.35629 * 125.67813 * 2 1
4 4 C 1.35510 * 108.85274 * 179.97438 * 3 2 1
5 5 Cl 1.73602 * 126.07488 * 179.97438 * 4 3 2
6 6 C 1.39889 * 107.85435 * 359.97438 * 4 3 2
7 7 C 1.37630 * 125.67623 * 179.68655 * 2 1 3
8 8 C 1.46675 * 126.22337 * 0.02562 * 7 2 1
9 9 O 1.21694 * 119.99947 * 26.68976 * 8 7 2
10 10 N 1.34778 * 120.00099 * 206.69688 * 8 7 2
11 11 C 1.46928 * 120.62786 * 6.83437 * 10 8 7
12 12 C 1.52770 * 109.00695 * 233.58574 * 11 10 8
13 13 C 1.53035 * 109.38225 * 305.58823 * 12 11 10
14 14 C 1.52999 * 109.45764 * 181.25980 * 13 12 11
15 15 C 1.53000 * 109.47162 * 64.93587 * 14 13 12
16 16 N 1.46499 * 109.47033 * 179.97438 * 15 14 13
17 17 C 1.36936 * 120.00037 * 179.97438 * 16 15 14
18 18 H 1.08010 * 119.99749 * 0.02562 * 17 16 15
19 19 C 1.38809 * 120.00291 * 180.02562 * 17 16 15
20 20 N 1.31613 * 119.99913 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00137 * 180.02562 * 19 17 16
22 22 H 1.48502 * 109.47415 * 359.97438 * 21 19 17
23 23 H 1.48497 * 109.47356 * 119.99628 * 21 19 17
24 24 H 1.48505 * 109.47403 * 239.99793 * 21 19 17
25 25 C 1.53041 * 109.53764 * 61.24375 * 13 12 11
26 26 C 1.46924 * 120.63337 * 187.11995 * 10 8 7
27 27 H 1.08994 * 109.47070 * 95.36341 * 1 2 3
28 28 H 1.09002 * 109.46955 * 215.37113 * 1 2 3
29 29 H 1.09009 * 109.46998 * 335.36414 * 1 2 3
30 30 H 1.08004 * 125.57184 * 359.97438 * 3 2 1
31 31 H 1.07999 * 126.45144 * 179.97438 * 6 4 3
32 32 H 1.08997 * 109.58664 * 353.42056 * 11 10 8
33 33 H 1.09000 * 109.58908 * 113.85059 * 11 10 8
34 34 H 1.08999 * 109.56260 * 185.54977 * 12 11 10
35 35 H 1.08999 * 109.35678 * 65.49930 * 12 11 10
36 36 H 1.08998 * 109.46151 * 301.22048 * 13 12 11
37 37 H 1.09009 * 109.46983 * 184.93100 * 14 13 12
38 38 H 1.08998 * 109.47340 * 304.93344 * 14 13 12
39 39 H 1.09000 * 109.46598 * 299.99687 * 15 14 13
40 40 H 1.08998 * 109.47191 * 59.99665 * 15 14 13
41 41 H 0.96997 * 120.00486 * 359.97438 * 16 15 14
42 42 H 0.97002 * 120.00433 * 180.02562 * 20 19 17
43 43 H 1.09001 * 109.49960 * 178.68423 * 25 13 12
44 44 H 1.08990 * 109.50132 * 58.58485 * 25 13 12
45 45 H 1.09004 * 109.58519 * 246.15270 * 26 10 8
46 46 H 1.09003 * 109.58284 * 6.43068 * 26 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2561 1.1017 0.0000
4 6 3.5531 0.7095 0.0006
5 17 4.9378 1.7567 0.0002
6 6 3.5783 -0.6892 0.0015
7 6 2.2677 -1.1180 0.0061
8 6 1.8120 -2.5121 0.0132
9 8 0.7281 -2.8004 -0.4591
10 7 2.5936 -3.4739 0.5429
11 6 3.8341 -3.1258 1.2492
12 6 4.9926 -3.9109 0.6365
13 6 4.6582 -5.4042 0.6514
14 6 5.8304 -6.1948 0.0669
15 6 7.0518 -6.0428 0.9758
16 7 8.1740 -6.8004 0.4165
17 6 9.3816 -6.8122 1.0621
18 1 9.5065 -6.2634 1.9839
19 6 10.4451 -7.5295 0.5318
20 7 10.2928 -8.1987 -0.5912
21 14 12.0922 -7.5463 1.4129
22 1 12.0030 -6.7220 2.6449
23 1 12.4456 -8.9423 1.7754
24 1 13.1378 -6.9873 0.5186
25 6 3.4040 -5.6563 -0.1885
26 6 2.2247 -4.8907 0.4196
27 1 -0.3633 -0.0961 -1.0231
28 1 -0.3633 -0.8380 0.5949
29 1 -0.3633 0.9342 0.4284
30 1 1.9089 2.1244 -0.0004
31 1 4.4584 -1.3151 0.0018
32 1 4.0246 -2.0574 1.1481
33 1 3.7388 -3.3839 2.3039
34 1 5.8991 -3.7352 1.2156
35 1 5.1476 -3.5830 -0.3914
36 1 4.4790 -5.7260 1.6773
37 1 5.5590 -7.2482 -0.0037
38 1 6.0669 -5.8131 -0.9263
39 1 7.3232 -4.9895 1.0465
40 1 6.8153 -6.4245 1.9691
41 1 8.0618 -7.2935 -0.4112
42 1 11.0358 -8.7003 -0.9616
43 1 3.1798 -6.7230 -0.1966
44 1 3.5740 -5.3120 -1.2086
45 1 1.9954 -5.2957 1.4053
46 1 1.3520 -4.9861 -0.2266
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753570517.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:28:08
Heat of formation + Delta-G solvation = 5.285920 kcal
Electronic energy + Delta-G solvation = -27019.667230 eV
Core-core repulsion = 23163.695823 eV
Total energy + Delta-G solvation = -3855.971406 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.145 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.71300 -40.79778 -38.93376 -37.35695 -36.91685 -35.20187 -33.89476 -33.00607
-32.33606 -30.48894 -29.68659 -27.51489 -26.69405 -24.98128 -24.35873 -23.38322
-22.17340 -21.93145 -21.02197 -20.05297 -19.10361 -18.53553 -17.64342 -16.78725
-16.70773 -16.58352 -16.04743 -15.75133 -15.57294 -15.34825 -15.32400 -15.13131
-14.77675 -14.58169 -14.46935 -14.22591 -13.90566 -13.82594 -13.56100 -13.27746
-13.09051 -12.91118 -12.86135 -12.48513 -12.41498 -12.26957 -12.15471 -12.04898
-11.93516 -11.83278 -11.60980 -11.39897 -11.18756 -11.00106 -10.87731 -9.80958
-9.65975 -9.24269 -8.97400 -7.94414 -5.23097 0.30909 1.11560 1.38403
1.48075 1.49043 1.59220 1.62440 2.06313 2.28468 2.57087 3.38295
3.39786 3.70127 3.79406 3.84499 3.89699 4.00078 4.12109 4.17799
4.22961 4.34306 4.35094 4.41052 4.48217 4.55570 4.60152 4.64480
4.67204 4.77199 4.82754 4.86604 4.94277 4.98550 5.06806 5.10916
5.19957 5.31460 5.33106 5.42822 5.50918 5.54855 5.59173 5.68552
6.00870 6.26712 6.28797 6.96524 7.34171 8.12279 8.33862 9.29749
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.013011 B = 0.002434 C = 0.002099
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2151.516020 B =11501.417410 C =13337.796548
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -0.407 5.407
3 C 0.049 3.951
4 C -0.142 4.142
5 Cl -0.048 7.048
6 C -0.140 4.140
7 C -0.056 4.056
8 C 0.587 3.413
9 O -0.578 6.578
10 N -0.592 5.592
11 C 0.079 3.921
12 C -0.130 4.130
13 C -0.073 4.073
14 C -0.108 4.108
15 C 0.151 3.849
16 N -0.751 5.751
17 C -0.242 4.242
18 H 0.077 0.923
19 C -0.080 4.080
20 N -0.972 5.972
21 Si 0.974 3.026
22 H -0.264 1.264
23 H -0.293 1.293
24 H -0.293 1.293
25 C -0.122 4.122
26 C 0.117 3.883
27 H 0.083 0.917
28 H 0.079 0.921
29 H 0.124 0.876
30 H 0.213 0.787
31 H 0.168 0.832
32 H 0.120 0.880
33 H 0.084 0.916
34 H 0.084 0.916
35 H 0.060 0.940
36 H 0.082 0.918
37 H 0.057 0.943
38 H 0.051 0.949
39 H 0.027 0.973
40 H 0.019 0.981
41 H 0.372 0.628
42 H 0.251 0.749
43 H 0.088 0.912
44 H 0.056 0.944
45 H 0.086 0.914
46 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.517 20.789 3.834 31.622
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.079 5.079
3 C -0.089 4.089
4 C -0.174 4.174
5 Cl -0.020 7.020
6 C -0.166 4.166
7 C -0.170 4.170
8 C 0.376 3.624
9 O -0.460 6.460
10 N -0.324 5.324
11 C -0.043 4.043
12 C -0.168 4.168
13 C -0.092 4.092
14 C -0.146 4.146
15 C 0.025 3.975
16 N -0.393 5.393
17 C -0.374 4.374
18 H 0.095 0.905
19 C -0.272 4.272
20 N -0.623 5.623
21 Si 0.803 3.197
22 H -0.188 1.188
23 H -0.220 1.220
24 H -0.221 1.221
25 C -0.160 4.160
26 C -0.005 4.005
27 H 0.101 0.899
28 H 0.097 0.903
29 H 0.143 0.857
30 H 0.230 0.770
31 H 0.185 0.815
32 H 0.138 0.862
33 H 0.103 0.897
34 H 0.103 0.897
35 H 0.079 0.921
36 H 0.101 0.899
37 H 0.076 0.924
38 H 0.070 0.930
39 H 0.045 0.955
40 H 0.037 0.963
41 H 0.203 0.797
42 H 0.060 0.940
43 H 0.106 0.894
44 H 0.075 0.925
45 H 0.105 0.895
46 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -24.280 20.729 3.764 32.147
hybrid contribution 1.396 -0.585 -0.282 1.539
sum -22.885 20.145 3.483 30.686
Atomic orbital electron populations
1.22391 0.73742 1.05976 1.04750 1.44026 1.07996 1.04202 1.51676
1.22259 0.88259 0.93160 1.05172 1.20092 0.88904 0.91274 1.17132
1.98342 1.40655 1.65256 1.97704 1.21611 0.95546 0.93794 1.05627
1.19926 0.90355 0.87900 1.18834 1.17127 0.83639 0.84086 0.77500
1.90780 1.22607 1.83543 1.49091 1.47879 1.23953 1.06399 1.54127
1.22584 0.82052 1.03140 0.96474 1.21935 0.98293 0.94742 1.01868
1.21002 0.93357 0.94750 1.00109 1.21628 0.94230 1.00123 0.98642
1.20898 0.86939 0.94339 0.95346 1.42679 1.08930 1.59472 1.28255
1.19705 0.89311 1.23929 1.04489 0.90511 1.25606 1.02050 1.00828
0.98710 1.69827 1.32182 1.37780 1.22540 0.85061 0.79634 0.77060
0.77958 1.18837 1.22033 1.22052 1.21918 0.93928 1.01082 0.99092
1.21691 0.97822 0.78541 1.02397 0.89859 0.90271 0.85733 0.77025
0.81490 0.86248 0.89728 0.89719 0.92117 0.89922 0.92422 0.92978
0.95482 0.96334 0.79684 0.94042 0.89377 0.92501 0.89543 0.89873
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.73 10.31 127.77 1.32 2.05 16
2 N -0.41 -6.35 3.16 -534.16 -1.69 -8.04 16
3 C 0.05 0.64 11.35 83.47 0.95 1.59 16
4 C -0.14 -2.44 6.66 22.04 0.15 -2.30 16
5 Cl -0.05 -0.83 29.30 -2.72 -0.08 -0.91 16
6 C -0.14 -2.67 8.57 22.59 0.19 -2.48 16
7 C -0.06 -1.14 6.48 40.36 0.26 -0.88 16
8 C 0.59 13.80 7.45 86.45 0.64 14.45 16
9 O -0.58 -16.43 15.08 -4.33 -0.07 -16.49 16
10 N -0.59 -12.08 2.98 -824.42 -2.46 -14.54 16
11 C 0.08 1.37 5.78 86.22 0.50 1.87 16
12 C -0.13 -2.69 4.92 30.53 0.15 -2.54 16
13 C -0.07 -1.63 2.15 -10.77 -0.02 -1.65 16
14 C -0.11 -3.31 4.80 30.59 0.15 -3.16 16
15 C 0.15 5.84 6.02 86.38 0.52 6.36 16
16 N -0.75 -38.74 5.60 -343.45 -1.92 -40.66 16
17 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16
18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16
19 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16
20 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16
21 Si 0.97 46.48 29.55 68.60 2.03 48.51 16
22 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16
23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16
25 C -0.12 -2.44 5.36 30.67 0.16 -2.28 16
26 C 0.12 2.24 6.41 86.36 0.55 2.79 16
27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
28 H 0.08 1.05 7.39 -2.39 -0.02 1.03 16
29 H 0.12 0.33 8.12 -2.38 -0.02 0.31 16
30 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16
31 H 0.17 3.06 5.87 -2.91 -0.02 3.04 16
32 H 0.12 1.99 3.17 -2.39 -0.01 1.98 16
33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.08 1.82 6.50 -2.39 -0.02 1.80 16
35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
37 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16
38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
39 H 0.03 1.03 6.53 -2.39 -0.02 1.01 16
40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
41 H 0.37 20.50 7.67 -92.71 -0.71 19.79 16
42 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16
43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
45 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16
46 H 0.08 1.76 7.05 -2.39 -0.02 1.75 16
Total: -1.00 -72.56 379.72 3.21 -69.35
By element:
Atomic # 1 Polarization: 25.92 SS G_CDS: 0.29 Total: 26.21 kcal
Atomic # 6 Polarization: -10.07 SS G_CDS: 6.83 Total: -3.24 kcal
Atomic # 7 Polarization: -117.63 SS G_CDS: -5.79 Total: -123.42 kcal
Atomic # 8 Polarization: -16.43 SS G_CDS: -0.07 Total: -16.49 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal
Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal
Total: -72.56 3.21 -69.35 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753570517.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.634 kcal
(2) G-P(sol) polarization free energy of solvation -72.559 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.075 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.286 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds