Wall clock time and date at job start Tue Mar 31 2020 23:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48497 * 109.47093 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00139 * 3 2 1 6 6 H 1.48500 * 109.47392 * 149.99714 * 3 2 1 7 7 C 1.38811 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.02013 * 53.60814 * 11 10 9 13 13 C 1.54264 * 110.03002 * 292.16334 * 11 10 9 14 14 C 1.54897 * 104.19675 * 217.10856 * 13 11 10 15 15 C 1.54887 * 102.74744 * 37.94098 * 14 13 11 16 16 C 1.53874 * 110.03037 * 175.00175 * 11 10 9 17 17 H 1.09000 * 110.03070 * 238.57126 * 16 11 10 18 18 N 1.46501 * 110.03407 * 359.94644 * 16 11 10 19 19 C 1.34780 * 120.00157 * 205.00617 * 18 16 11 20 20 O 1.21547 * 119.99763 * 359.97438 * 19 18 16 21 21 C 1.47839 * 120.00033 * 179.97438 * 19 18 16 22 22 C 1.40026 * 120.55945 * 179.71989 * 21 19 18 23 23 C 1.38352 * 118.28340 * 179.73462 * 22 21 19 24 24 C 1.38348 * 119.30861 * 0.54048 * 23 22 21 25 25 C 1.50696 * 119.46111 * 179.69887 * 24 23 22 26 26 F 1.39901 * 109.47095 * 210.02169 * 25 24 23 27 27 F 1.39903 * 109.47610 * 330.02138 * 25 24 23 28 28 N 1.31927 * 121.08077 * 359.72315 * 24 23 22 29 29 C 1.31700 * 121.87499 * 359.97438 * 28 24 23 30 30 H 0.96993 * 120.00222 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 33 33 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 34 34 H 1.08998 * 110.49133 * 335.78593 * 13 11 10 35 35 H 1.09000 * 110.48973 * 98.43075 * 13 11 10 36 36 H 1.08998 * 110.75483 * 279.63133 * 14 13 11 37 37 H 1.08991 * 110.91636 * 156.33038 * 14 13 11 38 38 H 1.09001 * 110.48698 * 203.37806 * 15 14 13 39 39 H 1.09006 * 110.48488 * 80.73848 * 15 14 13 40 40 H 0.96998 * 120.00086 * 25.00128 * 18 16 11 41 41 H 1.07998 * 120.85530 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.34193 * 180.24235 * 23 22 21 43 43 H 1.08999 * 109.47241 * 90.02491 * 25 24 23 44 44 H 1.08003 * 119.71432 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.6165 -2.1910 0.0024 12 1 5.8716 -1.5258 0.8272 13 6 6.0371 -1.5563 -1.3393 14 6 7.4284 -2.1713 -1.6309 15 6 7.2660 -3.6317 -1.1411 16 6 6.3979 -3.5106 0.1283 17 1 7.0328 -3.4855 1.0140 18 7 5.4672 -4.6391 0.2105 19 6 5.8480 -5.7844 0.8104 20 8 6.9637 -5.8811 1.2828 21 6 4.9086 -6.9229 0.8939 22 6 5.2939 -8.1202 1.5093 23 6 4.3755 -9.1533 1.5660 24 6 3.1218 -8.9763 1.0084 25 6 2.1210 -10.1017 1.0623 26 9 1.2758 -10.0278 -0.0501 27 9 2.7962 -11.3270 1.0543 28 7 2.7882 -7.8385 0.4299 29 6 3.6250 -6.8243 0.3560 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3619 0.0007 32 1 3.8493 -3.0422 -0.8891 33 1 3.8486 -3.0424 0.8909 34 1 5.3302 -1.8220 -2.1253 35 1 6.1116 -0.4732 -1.2422 36 1 8.2045 -1.6577 -1.0635 37 1 7.6500 -2.1442 -2.6977 38 1 8.2373 -4.0632 -0.8993 39 1 6.7576 -4.2327 -1.8951 40 1 4.5769 -4.5619 -0.1667 41 1 6.2813 -8.2328 1.9321 42 1 4.6362 -10.0898 2.0365 43 1 1.5296 -10.0187 1.9741 44 1 3.3151 -5.9085 -0.1253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753888366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:29 Heat of formation + Delta-G solvation = -85.071529 kcal Electronic energy + Delta-G solvation = -29064.626430 eV Core-core repulsion = 24652.940150 eV Total energy + Delta-G solvation = -4411.686279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.35023 -47.34457 -41.07508 -39.82078 -38.10505 -34.62935 -34.05433 -33.09543 -32.43845 -31.62641 -29.12943 -28.38595 -26.85444 -24.79753 -24.26804 -23.31774 -22.25346 -21.11513 -20.64287 -19.38676 -18.59724 -18.00070 -17.90902 -17.78657 -17.40927 -16.59274 -15.84748 -15.48705 -15.40239 -15.24793 -14.77330 -14.52679 -14.25118 -14.14985 -13.98205 -13.90584 -13.68664 -13.54646 -13.39013 -13.28533 -12.93756 -12.74082 -12.38049 -11.93867 -11.75986 -11.67629 -11.08312 -11.02282 -10.98186 -10.62061 -10.60328 -10.49670 -10.39845 -10.38898 -10.12003 -9.83815 -9.70599 -9.65222 -9.15862 -8.95305 -7.31738 -5.82729 -3.19379 0.05158 0.74763 2.48785 2.88901 2.98254 3.32726 3.35125 3.37268 3.41281 3.69441 3.85640 4.29534 4.31526 4.42352 4.46244 4.53499 4.58357 4.63361 4.68445 4.80868 4.90327 5.10417 5.21702 5.38554 5.41132 5.48142 5.49788 5.55431 5.60846 5.66900 5.70323 5.80059 5.90602 5.95729 5.98931 6.09791 6.22358 6.35075 6.39583 6.48528 6.58939 7.27500 7.32664 7.91090 7.97535 8.35693 9.13994 9.86285 10.05356 11.35307 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.003046 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.958373 B = 9190.795779 C =11414.341016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.159 3.841 11 C -0.113 4.113 12 H 0.084 0.916 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.150 3.850 17 H 0.093 0.907 18 N -0.712 5.712 19 C 0.562 3.438 20 O -0.536 6.536 21 C -0.168 4.168 22 C -0.015 4.015 23 C -0.149 4.149 24 C 0.068 3.932 25 C 0.326 3.674 26 F -0.183 7.183 27 F -0.194 7.194 28 N -0.453 5.453 29 C 0.143 3.857 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.026 0.974 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.408 0.592 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.134 0.866 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 -17.778 1.562 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.032 3.968 11 C -0.132 4.132 12 H 0.102 0.898 13 C -0.154 4.154 14 C -0.162 4.162 15 C -0.171 4.171 16 C 0.045 3.955 17 H 0.111 0.889 18 N -0.366 5.366 19 C 0.348 3.652 20 O -0.414 6.414 21 C -0.173 4.173 22 C -0.042 4.042 23 C -0.169 4.169 24 C -0.071 4.071 25 C 0.272 3.728 26 F -0.164 7.164 27 F -0.175 7.175 28 N -0.161 5.161 29 C -0.016 4.016 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.247 0.753 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.151 0.849 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.608 -17.853 1.511 21.908 hybrid contribution 0.833 1.194 0.118 1.460 sum 13.441 -16.660 1.629 21.468 Atomic orbital electron populations 1.69698 1.05111 1.25922 1.57145 1.24670 0.95213 0.97228 1.01794 0.86563 0.79227 0.85007 0.77807 1.21001 1.21706 1.20335 1.19031 0.80512 0.94771 1.43545 0.89183 1.42649 1.04005 1.01962 1.91032 1.20684 0.88077 0.89975 0.98081 1.22288 0.96575 0.95235 0.99116 0.89791 1.22413 0.96129 1.00035 0.96798 1.22476 0.97674 0.95112 1.00904 1.22774 0.99886 0.97487 0.96942 1.21699 0.90279 0.84307 0.99215 0.88862 1.46340 1.18707 1.13245 1.58291 1.17957 0.86564 0.82409 0.78280 1.90769 1.20752 1.82314 1.47562 1.21216 0.96464 0.96436 1.03228 1.21739 1.00057 0.90185 0.92192 1.21852 0.93136 1.00932 1.00967 1.21906 0.94116 0.94408 0.96673 1.20110 0.84722 0.78332 0.89646 1.93061 1.71330 1.96128 1.55883 1.93021 1.81675 1.45620 1.97232 1.67344 1.35427 0.99300 1.14009 1.23112 0.88196 0.96775 0.93484 0.92978 0.80504 0.95657 0.95353 0.90607 0.91444 0.91483 0.91408 0.91249 0.91103 0.75269 0.82661 0.83046 0.84925 0.81286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.52 27.74 -169.99 -4.71 16.80 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 9 N -0.75 -16.71 5.25 -59.91 -0.31 -17.02 16 10 C 0.16 2.73 4.18 -4.04 -0.02 2.72 16 11 C -0.11 -1.55 2.96 -89.50 -0.27 -1.82 16 12 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.12 -1.48 6.08 -25.07 -0.15 -1.64 16 14 C -0.12 -1.29 6.91 -24.74 -0.17 -1.46 16 15 C -0.13 -1.44 6.53 -25.07 -0.16 -1.61 16 16 C 0.15 1.83 3.22 -66.81 -0.22 1.62 16 17 H 0.09 1.21 7.56 -51.93 -0.39 0.81 16 18 N -0.71 -8.54 4.34 -53.67 -0.23 -8.78 16 19 C 0.56 7.12 7.78 -12.33 -0.10 7.03 16 20 O -0.54 -8.10 16.08 5.32 0.09 -8.02 16 21 C -0.17 -1.87 5.89 -104.82 -0.62 -2.48 16 22 C -0.02 -0.14 9.72 -38.87 -0.38 -0.52 16 23 C -0.15 -1.23 9.42 -39.50 -0.37 -1.60 16 24 C 0.07 0.67 6.58 -82.51 -0.54 0.13 16 25 C 0.33 2.70 5.72 36.00 0.21 2.90 16 26 F -0.18 -2.05 17.05 2.25 0.04 -2.01 16 27 F -0.19 -1.63 16.45 2.25 0.04 -1.59 16 28 N -0.45 -5.48 9.94 -9.14 -0.09 -5.57 16 29 C 0.14 1.62 10.71 -17.13 -0.18 1.43 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.36 7.93 5.41 -40.82 -0.22 7.71 16 32 H 0.03 0.43 7.11 -51.93 -0.37 0.06 16 33 H 0.03 0.50 7.42 -51.93 -0.39 0.12 16 34 H 0.08 1.05 7.76 -51.93 -0.40 0.64 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.41 4.66 3.96 -40.82 -0.16 4.50 16 41 H 0.16 1.29 7.74 -52.49 -0.41 0.88 16 42 H 0.15 0.84 7.59 -52.49 -0.40 0.44 16 43 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.17 1.72 6.42 -52.48 -0.34 1.38 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -33.54 367.47 -7.72 -41.27 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.62 Total: 9.38 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.22 Total: -2.10 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.14 Total: -59.27 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.54 -7.72 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753888366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.806 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds