Wall clock time and date at job start Tue Mar 31 2020 23:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48497 * 109.47093 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00139 * 3 2 1 6 6 H 1.48500 * 109.47392 * 149.99714 * 3 2 1 7 7 C 1.38811 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.02013 * 53.60814 * 11 10 9 13 13 C 1.54264 * 110.03002 * 292.16334 * 11 10 9 14 14 C 1.54897 * 104.19675 * 217.10856 * 13 11 10 15 15 C 1.54887 * 102.74744 * 37.94098 * 14 13 11 16 16 C 1.53874 * 110.03037 * 175.00175 * 11 10 9 17 17 H 1.09000 * 110.03070 * 238.57126 * 16 11 10 18 18 N 1.46501 * 110.03407 * 359.94644 * 16 11 10 19 19 C 1.34780 * 120.00157 * 205.00617 * 18 16 11 20 20 O 1.21547 * 119.99763 * 359.97438 * 19 18 16 21 21 C 1.47839 * 120.00033 * 179.97438 * 19 18 16 22 22 C 1.40026 * 120.55945 * 179.71989 * 21 19 18 23 23 C 1.38352 * 118.28340 * 179.73462 * 22 21 19 24 24 C 1.38348 * 119.30861 * 0.54048 * 23 22 21 25 25 C 1.50696 * 119.46111 * 179.69887 * 24 23 22 26 26 F 1.39901 * 109.47095 * 210.02169 * 25 24 23 27 27 F 1.39903 * 109.47610 * 330.02138 * 25 24 23 28 28 N 1.31927 * 121.08077 * 359.72315 * 24 23 22 29 29 C 1.31700 * 121.87499 * 359.97438 * 28 24 23 30 30 H 0.96993 * 120.00222 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 33 33 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 34 34 H 1.08998 * 110.49133 * 335.78593 * 13 11 10 35 35 H 1.09000 * 110.48973 * 98.43075 * 13 11 10 36 36 H 1.08998 * 110.75483 * 279.63133 * 14 13 11 37 37 H 1.08991 * 110.91636 * 156.33038 * 14 13 11 38 38 H 1.09001 * 110.48698 * 203.37806 * 15 14 13 39 39 H 1.09006 * 110.48488 * 80.73848 * 15 14 13 40 40 H 0.96998 * 120.00086 * 25.00128 * 18 16 11 41 41 H 1.07998 * 120.85530 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.34193 * 180.24235 * 23 22 21 43 43 H 1.08999 * 109.47241 * 90.02491 * 25 24 23 44 44 H 1.08003 * 119.71432 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.6165 -2.1910 0.0024 12 1 5.8716 -1.5258 0.8272 13 6 6.0371 -1.5563 -1.3393 14 6 7.4284 -2.1713 -1.6309 15 6 7.2660 -3.6317 -1.1411 16 6 6.3979 -3.5106 0.1283 17 1 7.0328 -3.4855 1.0140 18 7 5.4672 -4.6391 0.2105 19 6 5.8480 -5.7844 0.8104 20 8 6.9637 -5.8811 1.2828 21 6 4.9086 -6.9229 0.8939 22 6 5.2939 -8.1202 1.5093 23 6 4.3755 -9.1533 1.5660 24 6 3.1218 -8.9763 1.0084 25 6 2.1210 -10.1017 1.0623 26 9 1.2758 -10.0278 -0.0501 27 9 2.7962 -11.3270 1.0543 28 7 2.7882 -7.8385 0.4299 29 6 3.6250 -6.8243 0.3560 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3619 0.0007 32 1 3.8493 -3.0422 -0.8891 33 1 3.8486 -3.0424 0.8909 34 1 5.3302 -1.8220 -2.1253 35 1 6.1116 -0.4732 -1.2422 36 1 8.2045 -1.6577 -1.0635 37 1 7.6500 -2.1442 -2.6977 38 1 8.2373 -4.0632 -0.8993 39 1 6.7576 -4.2327 -1.8951 40 1 4.5769 -4.5619 -0.1667 41 1 6.2813 -8.2328 1.9321 42 1 4.6362 -10.0898 2.0365 43 1 1.5296 -10.0187 1.9741 44 1 3.3151 -5.9085 -0.1253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753888366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:28 Heat of formation + Delta-G solvation = -106.800064 kcal Electronic energy + Delta-G solvation = -29065.568650 eV Core-core repulsion = 24652.940150 eV Total energy + Delta-G solvation = -4412.628499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.04568 -48.06461 -41.96407 -40.77347 -39.18100 -36.37470 -35.03814 -33.90603 -33.56200 -33.23126 -30.58308 -29.26707 -27.68981 -26.34310 -25.09004 -24.10562 -23.96861 -22.07202 -21.57866 -20.66495 -19.71486 -19.28882 -18.77441 -18.55255 -18.33693 -17.51173 -16.84597 -16.62492 -16.41370 -16.22798 -16.13303 -15.64162 -15.57178 -15.18449 -14.94206 -14.90471 -14.72602 -14.54534 -14.43172 -14.27540 -14.17542 -13.67829 -13.62387 -13.49719 -12.93845 -12.83049 -12.39852 -12.37734 -12.09633 -11.94985 -11.82283 -11.73660 -11.58698 -11.47489 -11.41346 -11.18902 -10.97080 -10.71032 -10.51660 -10.12252 -9.29623 -8.01661 -5.35411 -0.76005 -0.01642 1.38479 1.41796 1.49007 1.56867 1.96086 2.25419 2.49154 2.53472 3.05774 3.15876 3.29842 3.31073 3.51397 3.59047 3.65219 3.69585 3.77205 3.82828 3.97306 3.99388 4.11632 4.33802 4.41236 4.46539 4.47823 4.50772 4.60163 4.71004 4.74912 4.84390 4.88101 4.96318 5.06874 5.20094 5.22136 5.23465 5.31502 5.46473 5.48847 5.76557 6.21671 6.31641 6.49634 6.97961 7.08899 7.84414 8.02898 9.19568 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.003046 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.958373 B = 9190.795779 C =11414.341016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.250 1.250 7 C -0.234 4.234 8 H 0.059 0.941 9 N -0.753 5.753 10 C 0.157 3.843 11 C -0.104 4.104 12 H 0.084 0.916 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.153 3.847 17 H 0.089 0.911 18 N -0.711 5.711 19 C 0.565 3.435 20 O -0.562 6.562 21 C -0.179 4.179 22 C -0.014 4.014 23 C -0.135 4.135 24 C 0.058 3.942 25 C 0.325 3.675 26 F -0.203 7.203 27 F -0.193 7.193 28 N -0.482 5.482 29 C 0.135 3.865 30 H 0.257 0.743 31 H 0.367 0.633 32 H 0.033 0.967 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.409 0.591 41 H 0.169 0.831 42 H 0.184 0.816 43 H 0.172 0.828 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.309 -18.296 1.860 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.175 1.175 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.399 5.399 10 C 0.031 3.969 11 C -0.124 4.124 12 H 0.102 0.898 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.048 3.952 17 H 0.107 0.893 18 N -0.364 5.364 19 C 0.352 3.648 20 O -0.442 6.442 21 C -0.184 4.184 22 C -0.040 4.040 23 C -0.155 4.155 24 C -0.080 4.080 25 C 0.271 3.729 26 F -0.184 7.184 27 F -0.175 7.175 28 N -0.191 5.191 29 C -0.024 4.024 30 H 0.066 0.934 31 H 0.200 0.800 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.249 0.751 41 H 0.186 0.814 42 H 0.201 0.799 43 H 0.189 0.811 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.047 -18.401 1.801 23.838 hybrid contribution 0.067 1.189 0.045 1.192 sum 15.114 -17.211 1.846 22.979 Atomic orbital electron populations 1.69883 1.07174 1.26638 1.59678 1.25491 0.96048 1.01242 1.02672 0.85448 0.78708 0.79723 0.78151 1.20287 1.22632 1.17491 1.19035 0.82671 0.93519 1.41224 0.92259 1.42644 1.02379 1.04019 1.90834 1.20856 0.90104 0.87916 0.98043 1.22199 0.93910 0.96289 0.99979 0.89776 1.22407 0.97400 1.00147 0.95570 1.22433 0.96360 0.94240 1.02013 1.22733 0.99703 0.98066 0.96031 1.21679 0.90119 0.83468 0.99935 0.89255 1.46341 1.18751 1.13230 1.58051 1.18130 0.86381 0.82691 0.77606 1.90749 1.21812 1.82815 1.48804 1.21130 0.96109 0.96700 1.04435 1.21978 1.00835 0.89737 0.91499 1.22147 0.91908 1.01652 0.99754 1.22312 0.95223 0.94213 0.96262 1.20500 0.84486 0.77673 0.90233 1.93019 1.71934 1.96206 1.57244 1.93019 1.81724 1.45486 1.97229 1.67326 1.36213 1.00284 1.15267 1.23122 0.88413 0.96939 0.93918 0.93408 0.80007 0.94918 0.95674 0.91798 0.91367 0.90204 0.90029 0.90732 0.91118 0.75104 0.81396 0.79858 0.81114 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.21 13.97 21.65 0.30 -61.91 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 3 Si 0.95 44.30 27.74 68.60 1.90 46.20 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.25 -10.40 6.52 99.48 0.65 -9.75 16 7 C -0.23 -12.85 10.47 84.03 0.88 -11.97 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 9 N -0.75 -32.96 5.25 -343.45 -1.80 -34.76 16 10 C 0.16 5.29 4.18 86.38 0.36 5.65 16 11 C -0.10 -2.71 2.96 -10.07 -0.03 -2.74 16 12 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.12 -2.76 6.08 31.67 0.19 -2.57 16 14 C -0.11 -2.02 6.91 31.89 0.22 -1.80 16 15 C -0.13 -2.49 6.53 31.67 0.21 -2.29 16 16 C 0.15 3.53 3.22 45.71 0.15 3.67 16 17 H 0.09 2.18 7.56 -2.39 -0.02 2.17 16 18 N -0.71 -16.65 4.34 -441.98 -1.92 -18.57 16 19 C 0.57 13.99 7.78 86.78 0.68 14.67 16 20 O -0.56 -16.49 16.08 -3.86 -0.06 -16.55 16 21 C -0.18 -3.87 5.89 -19.99 -0.12 -3.98 16 22 C -0.01 -0.25 9.72 22.73 0.22 -0.02 16 23 C -0.14 -1.94 9.42 22.32 0.21 -1.73 16 24 C 0.06 1.08 6.58 42.57 0.28 1.36 16 25 C 0.33 4.82 5.72 71.23 0.41 5.23 16 26 F -0.20 -4.43 17.05 44.97 0.77 -3.66 16 27 F -0.19 -2.83 16.45 44.97 0.74 -2.09 16 28 N -0.48 -11.60 9.94 -182.82 -1.82 -13.41 16 29 C 0.13 3.07 10.71 85.02 0.91 3.98 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.37 15.36 5.41 -92.71 -0.50 14.86 16 32 H 0.03 1.08 7.11 -2.39 -0.02 1.06 16 33 H 0.03 0.88 7.42 -2.39 -0.02 0.86 16 34 H 0.06 1.66 7.76 -2.39 -0.02 1.64 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.40 8.05 -2.38 -0.02 1.39 16 40 H 0.41 9.33 3.96 -92.71 -0.37 8.96 16 41 H 0.17 2.46 7.74 -2.91 -0.02 2.44 16 42 H 0.18 1.40 7.59 -2.91 -0.02 1.38 16 43 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.17 3.60 6.42 -2.91 -0.02 3.58 16 Total: -1.00 -73.28 367.47 3.27 -70.01 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.13 Total: 30.44 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.03 Total: 4.30 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -5.24 Total: -128.65 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.06 Total: -16.55 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 1.51 Total: -5.75 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.20 kcal Total: -73.28 3.27 -70.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753888366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.792 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds