Wall clock time and date at job start Tue Mar 31 2020 22:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28597 * 124.61818 * 2 1 4 4 C 1.31381 * 108.71970 * 179.71630 * 3 2 1 5 5 C 1.39683 * 105.89674 * 0.42629 * 4 3 2 6 6 C 1.50698 * 127.05015 * 179.84430 * 5 4 3 7 7 N 1.46903 * 109.47173 * 94.70629 * 6 5 4 8 8 C 1.46899 * 110.99559 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.46785 * 180.02562 * 8 7 6 10 10 H 1.09002 * 112.84755 * 43.80609 * 9 8 7 11 11 C 1.53777 * 113.61394 * 175.00368 * 9 8 7 12 12 C 1.53780 * 87.08338 * 140.06406 * 11 9 8 13 13 H 1.08996 * 113.61131 * 219.93423 * 12 11 9 14 14 N 1.46500 * 113.61239 * 89.11448 * 12 11 9 15 15 C 1.34775 * 119.99894 * 155.00371 * 14 12 11 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00022 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47048 * 119.99960 * 23 21 19 26 26 H 1.48504 * 109.47465 * 240.00413 * 23 21 19 27 27 C 1.53776 * 113.68816 * 272.53516 * 9 8 7 28 28 N 1.28595 * 124.61845 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47407 * 270.00571 * 1 2 3 30 30 H 1.09004 * 109.46965 * 30.00768 * 1 2 3 31 31 H 1.09000 * 109.47123 * 149.99719 * 1 2 3 32 32 H 1.07999 * 127.05293 * 180.26757 * 4 3 2 33 33 H 1.08995 * 109.47101 * 334.70522 * 6 5 4 34 34 H 1.08996 * 109.46986 * 214.70626 * 6 5 4 35 35 H 1.00898 * 110.99800 * 56.05035 * 7 6 5 36 36 H 1.09000 * 109.46990 * 60.00526 * 8 7 6 37 37 H 1.09000 * 109.47386 * 300.00006 * 8 7 6 38 38 H 1.09004 * 113.61253 * 25.51156 * 11 9 8 39 39 H 1.09006 * 113.61024 * 254.61441 * 11 9 8 40 40 H 0.97002 * 120.00447 * 335.00005 * 14 12 11 41 41 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 42 42 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 43 43 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 44 44 H 1.09010 * 113.61501 * 105.46179 * 27 9 8 45 45 H 1.08999 * 113.61985 * 334.55642 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4592 0.6984 0.0062 5 6 3.4592 -0.6984 0.0001 6 6 4.6619 -1.6064 0.0002 7 7 4.9795 -1.9981 1.3800 8 6 6.1491 -2.8861 1.4190 9 6 6.4481 -3.2723 2.8690 10 1 5.5511 -3.5316 3.4315 11 6 7.5831 -4.3000 3.0113 12 6 8.0528 -3.4948 4.2344 13 1 9.1364 -3.3996 4.3044 14 7 7.4370 -3.9251 5.4920 15 6 8.0685 -3.7038 6.6619 16 8 9.1468 -3.1489 6.6735 17 6 7.4347 -4.1460 7.9557 18 16 8.5190 -3.7111 9.3382 19 6 7.5604 -4.3243 10.6835 20 1 6.6082 -4.7982 10.4963 21 6 8.0320 -4.2039 11.9833 22 7 9.1950 -3.6312 12.2112 23 14 7.0154 -4.8533 13.4096 24 1 5.7572 -5.4473 12.8907 25 1 7.7893 -5.8915 14.1367 26 1 6.6919 -3.7381 14.3353 27 6 7.3653 -2.2757 3.5972 28 7 2.1956 -1.0583 0.0005 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 4.3211 1.3491 0.0119 33 1 5.5131 -1.0819 -0.4337 34 1 4.4448 -2.4970 -0.5895 35 1 4.1836 -2.4292 1.8258 36 1 7.0108 -2.3708 0.9948 37 1 5.9419 -3.7856 0.8392 38 1 8.2904 -4.2870 2.1820 39 1 7.2352 -5.3035 3.2565 40 1 6.5747 -4.3693 5.4828 41 1 7.2857 -5.2256 7.9370 42 1 6.4726 -3.6485 8.0776 43 1 9.5244 -3.5467 13.1196 44 1 6.8416 -1.6448 4.3156 45 1 8.0131 -1.7092 2.9282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755466146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:00 Heat of formation + Delta-G solvation = 65.283045 kcal Electronic energy + Delta-G solvation = -25169.960370 eV Core-core repulsion = 21350.927092 eV Total energy + Delta-G solvation = -3819.033278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.50127 -41.19029 -39.42890 -37.09135 -34.76874 -34.58516 -34.08651 -33.38448 -30.93462 -29.78984 -27.80760 -27.57016 -26.55208 -25.45464 -23.29773 -23.03609 -22.12391 -21.77236 -20.15992 -19.81643 -18.27031 -17.90142 -17.79041 -17.06307 -16.88124 -16.65834 -16.45401 -16.24698 -15.76539 -15.69116 -15.55070 -15.01359 -14.74454 -14.58095 -14.36632 -13.90981 -13.81126 -13.64521 -13.43388 -13.26071 -13.16064 -12.95147 -12.91896 -12.72468 -12.59519 -12.26423 -11.83443 -11.77694 -11.68473 -11.44351 -11.25085 -11.15967 -11.07340 -10.92937 -10.27303 -10.15984 -9.99225 -9.28913 -8.66708 -8.34854 -6.12911 0.80161 1.27051 1.41215 1.41294 1.47102 1.51458 1.58339 1.61376 2.25889 2.30759 2.99260 3.10820 3.32097 3.34026 3.64093 3.77487 3.88235 3.93996 4.02217 4.07304 4.22246 4.28637 4.30860 4.32144 4.50054 4.53394 4.55454 4.63165 4.66320 4.71013 4.79736 4.91165 4.94769 4.97343 5.11647 5.19263 5.26465 5.28976 5.35878 5.42021 5.72829 5.76202 6.08290 6.19963 6.39930 6.53801 7.06458 7.27734 7.33470 8.74666 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.001668 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.025070 B =16787.111109 C =18134.148669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.164 5.164 3 N -0.316 5.316 4 C -0.018 4.018 5 C -0.003 4.003 6 C 0.155 3.845 7 N -0.692 5.692 8 C 0.076 3.924 9 C -0.094 4.094 10 H 0.089 0.911 11 C -0.121 4.121 12 C 0.101 3.899 13 H 0.076 0.924 14 N -0.695 5.695 15 C 0.535 3.465 16 O -0.566 6.566 17 C -0.130 4.130 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.135 4.135 28 N -0.306 5.306 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.218 0.782 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.340 0.660 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.414 0.586 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.048 0.952 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.812 1.741 -31.280 35.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.065 5.065 3 N -0.158 5.158 4 C -0.200 4.200 5 C -0.166 4.166 6 C 0.024 3.976 7 N -0.324 5.324 8 C -0.053 4.053 9 C -0.112 4.112 10 H 0.107 0.893 11 C -0.159 4.159 12 C -0.005 4.005 13 H 0.094 0.906 14 N -0.348 5.348 15 C 0.321 3.679 16 O -0.444 6.444 17 C -0.281 4.281 18 S 0.076 5.924 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.174 4.174 28 N -0.150 5.150 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.234 0.766 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.157 0.843 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.251 0.749 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.973 3.288 -31.058 35.079 hybrid contribution -1.356 -1.562 0.915 2.262 sum -17.329 1.726 -30.144 34.813 Atomic orbital electron populations 1.22506 0.68247 1.07293 1.06199 1.48350 1.10070 0.98826 1.49300 1.74047 1.04829 1.16812 1.20078 1.25094 0.94689 0.95254 1.04929 1.23377 0.92462 0.94781 1.05963 1.20128 0.91501 0.95688 0.90283 1.60475 1.08797 1.46765 1.16361 1.21954 0.93422 0.94621 0.95291 1.22466 0.97088 0.95704 0.95986 0.89251 1.23295 0.98119 0.98280 0.96236 1.22038 0.97706 0.97566 0.83153 0.90560 1.45435 1.23919 1.61085 1.04361 1.20064 0.84621 0.77797 0.85404 1.90682 1.23056 1.43248 1.87433 1.23373 1.03748 1.05724 0.95236 1.85581 1.29839 1.79225 0.97774 1.23242 1.08074 1.44905 0.93195 0.89926 1.26136 0.96527 0.94981 1.01553 1.70189 1.20050 1.42277 1.22244 0.84896 0.78222 0.77993 0.76768 1.18043 1.19856 1.19945 1.23391 0.98605 0.96187 0.99189 1.73933 1.04382 1.16640 1.20017 0.88209 0.86476 0.86493 0.76563 0.87081 0.93056 0.84271 0.89656 0.93598 0.86888 0.89874 0.74854 0.87156 0.87406 0.91979 0.93266 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.57 127.77 1.48 2.11 16 2 N -0.16 -2.71 4.35 -206.54 -0.90 -3.61 16 3 N -0.32 -5.99 12.05 -56.86 -0.69 -6.68 16 4 C -0.02 -0.29 12.16 85.11 1.03 0.75 16 5 C 0.00 -0.05 6.87 42.98 0.30 0.24 16 6 C 0.15 1.71 6.27 85.56 0.54 2.24 16 7 N -0.69 -8.67 6.49 -517.93 -3.36 -12.03 16 8 C 0.08 0.75 5.52 86.31 0.48 1.22 16 9 C -0.09 -1.18 3.77 -10.27 -0.04 -1.22 16 10 H 0.09 1.16 8.13 -2.39 -0.02 1.14 16 11 C -0.12 -1.54 7.39 31.12 0.23 -1.31 16 12 C 0.10 2.21 4.32 45.52 0.20 2.41 16 13 H 0.08 2.10 7.46 -2.39 -0.02 2.08 16 14 N -0.70 -17.73 5.26 -440.05 -2.32 -20.05 16 15 C 0.54 20.13 7.85 87.66 0.69 20.82 16 16 O -0.57 -26.82 15.46 -3.02 -0.05 -26.86 16 17 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -31.52 9.50 67.95 0.65 -30.87 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 23 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.14 -2.55 7.43 31.12 0.23 -2.32 16 28 N -0.31 -5.60 12.05 -47.24 -0.57 -6.17 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.34 4.70 8.71 -89.70 -0.78 3.92 16 36 H 0.09 0.76 7.85 -2.39 -0.02 0.74 16 37 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.11 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.41 7.76 8.70 -92.71 -0.81 6.96 16 41 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 42 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.10 1.66 7.90 -2.39 -0.02 1.65 16 Total: -1.00 -84.19 397.10 -0.62 -84.81 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.57 Total: 19.96 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 6.68 Total: -9.51 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -7.54 Total: -104.67 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -84.19 -0.62 -84.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755466146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.097 kcal (2) G-P(sol) polarization free energy of solvation -84.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds