Wall clock time and date at job start Tue Mar 31 2020 22:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00319 * 2 1 4 4 H 1.48499 * 109.46878 * 269.99642 * 3 2 1 5 5 H 1.48501 * 109.46997 * 29.99527 * 3 2 1 6 6 H 1.48493 * 109.47066 * 149.99595 * 3 2 1 7 7 C 1.37877 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00109 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00035 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47352 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.35060 * 125.56473 * 90.02416 * 11 10 9 13 13 O 1.21296 * 127.28578 * 359.97438 * 12 11 10 14 14 C 1.49985 * 105.43109 * 179.97438 * 12 11 10 15 15 O 1.21300 * 127.28306 * 180.02562 * 14 12 11 16 16 N 1.35063 * 105.42730 * 359.97438 * 14 12 11 17 17 C 1.46499 * 125.56083 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47386 * 90.02673 * 17 16 14 19 19 C 1.53000 * 109.47188 * 179.97438 * 18 17 16 20 20 N 1.46906 * 109.47072 * 180.02562 * 19 18 17 21 21 C 1.47020 * 110.99867 * 293.63551 * 20 19 18 22 22 C 1.53097 * 109.25663 * 177.60414 * 21 20 19 23 23 O 1.43021 * 109.25605 * 56.85187 * 22 21 20 24 24 C 1.43021 * 113.73613 * 301.32802 * 23 22 21 25 25 C 1.47009 * 111.00252 * 170.00094 * 20 19 18 26 26 C 1.34271 * 125.56692 * 270.24771 * 11 10 9 27 27 O 1.21487 * 124.29978 * 0.05549 * 26 11 10 28 28 H 0.97005 * 119.99554 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47172 * 59.99703 * 9 7 2 30 30 H 1.09000 * 109.47065 * 300.00206 * 9 7 2 31 31 H 1.08995 * 109.47197 * 59.99786 * 10 9 7 32 32 H 1.09003 * 109.47109 * 299.99487 * 10 9 7 33 33 H 1.08999 * 109.47449 * 330.01907 * 17 16 14 34 34 H 1.09012 * 109.46818 * 210.02762 * 17 16 14 35 35 H 1.09002 * 109.46844 * 59.99941 * 18 17 16 36 36 H 1.08996 * 109.46961 * 299.99792 * 18 17 16 37 37 H 1.08993 * 109.47007 * 60.00172 * 19 18 17 38 38 H 1.08996 * 109.47340 * 299.99977 * 19 18 17 39 39 H 1.08998 * 109.50492 * 297.54142 * 21 20 19 40 40 H 1.09007 * 109.50106 * 57.67293 * 21 20 19 41 41 H 1.08995 * 109.50808 * 296.91455 * 22 21 20 42 42 H 1.08995 * 109.54142 * 176.80219 * 22 21 20 43 43 H 1.08995 * 109.50535 * 298.73468 * 24 23 22 44 44 H 1.09001 * 109.53535 * 178.62697 * 24 23 22 45 45 H 1.08999 * 109.50465 * 302.33238 * 25 20 19 46 46 H 1.08998 * 109.50618 * 62.41050 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6367 0.0010 11 7 5.4864 -2.6368 0.0009 12 6 6.2720 -2.6374 1.0996 13 8 5.9144 -2.6375 2.2586 14 6 7.6802 -2.6379 0.5833 15 8 8.7023 -2.6389 1.2364 16 7 7.5693 -2.6381 -0.7628 17 6 8.6871 -2.6381 -1.7098 18 6 9.0761 -4.0805 -2.0397 19 6 10.2431 -4.0804 -3.0292 20 7 10.6162 -5.4654 -3.3465 21 6 11.1674 -6.1462 -2.1658 22 6 11.4862 -7.6001 -2.5243 23 8 12.3881 -7.6253 -3.6340 24 6 11.8829 -6.9715 -4.8014 25 6 11.5680 -5.5114 -4.4659 26 6 6.2674 -2.6321 -1.0913 27 8 5.8492 -2.6261 -2.2319 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6802 0.8912 30 1 3.8751 -0.6806 -0.8888 31 1 3.6583 -3.1503 -0.8892 32 1 3.6577 -3.1507 0.8908 33 1 9.5397 -2.1243 -1.2655 34 1 8.3891 -2.1239 -2.6236 35 1 8.2235 -4.5941 -2.4841 36 1 9.3741 -4.5945 -1.1260 37 1 11.0957 -3.5666 -2.5853 38 1 9.9447 -3.5665 -3.9429 39 1 12.0794 -5.6414 -1.8473 40 1 10.4362 -6.1225 -1.3577 41 1 10.5659 -8.1194 -2.7912 42 1 11.9477 -8.0937 -1.6690 43 1 10.9741 -7.4726 -5.1346 44 1 12.6310 -7.0099 -5.5932 45 1 11.1294 -5.0242 -5.3368 46 1 12.4861 -4.9957 -4.1845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268642659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:30 Heat of formation + Delta-G solvation = -97.552937 kcal Electronic energy + Delta-G solvation = -29544.800654 eV Core-core repulsion = 25243.660655 eV Total energy + Delta-G solvation = -4301.139998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.31550 -40.03686 -39.22363 -38.91043 -36.96825 -36.38990 -35.69394 -33.69804 -32.52951 -31.63284 -30.70291 -28.38742 -26.58417 -25.31805 -24.76357 -24.47781 -22.25636 -22.19345 -21.38728 -20.82464 -20.60641 -17.96510 -17.63155 -17.18667 -17.01077 -16.85318 -16.60718 -16.36653 -15.90321 -15.50808 -15.43417 -15.27252 -15.10679 -14.65759 -14.59741 -14.51427 -14.26565 -14.12906 -13.46072 -13.10032 -12.86392 -12.78367 -12.71585 -12.50391 -12.43711 -11.96473 -11.86242 -11.71623 -11.21205 -11.21016 -11.10769 -10.92128 -10.86416 -10.30851 -10.26182 -10.16832 -10.08769 -9.88669 -9.47682 -9.39748 -8.89953 -8.66350 -6.16867 -4.17909 0.27725 1.75361 2.15239 2.44921 2.64672 3.21804 3.24033 3.31800 3.34029 3.44223 3.88715 4.26100 4.34647 4.35377 4.46654 4.47634 4.64096 4.69303 4.70016 4.82364 4.85677 4.97240 5.07293 5.10176 5.15765 5.17707 5.20661 5.21669 5.31341 5.39785 5.49073 5.50425 5.57933 5.76854 5.86799 5.90543 6.23484 6.43377 6.44597 6.52796 6.68560 6.73108 6.95786 7.11567 7.18335 7.51188 7.65740 8.33494 8.84106 9.43318 10.95609 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002241 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.540910 B =12492.006593 C =12954.637042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.078 0.922 9 C -0.027 4.027 10 C 0.129 3.871 11 N -0.566 5.566 12 C 0.503 3.497 13 O -0.409 6.409 14 C 0.508 3.492 15 O -0.423 6.423 16 N -0.577 5.577 17 C 0.123 3.877 18 C -0.137 4.137 19 C 0.061 3.939 20 N -0.537 5.537 21 C 0.013 3.987 22 C 0.063 3.937 23 O -0.387 6.387 24 C 0.063 3.937 25 C 0.018 3.982 26 C 0.706 3.294 27 O -0.481 6.481 28 H 0.266 0.734 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.317 -11.273 -7.822 28.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.096 0.904 9 C -0.065 4.065 10 C 0.012 3.988 11 N -0.314 5.314 12 C 0.283 3.717 13 O -0.274 6.274 14 C 0.289 3.711 15 O -0.288 6.288 16 N -0.326 5.326 17 C 0.002 3.998 18 C -0.175 4.175 19 C -0.068 4.068 20 N -0.262 5.262 21 C -0.115 4.115 22 C -0.014 4.014 23 O -0.306 6.306 24 C -0.014 4.014 25 C -0.110 4.110 26 C 0.409 3.591 27 O -0.349 6.349 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 24.999 -11.497 -7.600 28.546 hybrid contribution 0.745 1.637 0.206 1.810 sum 25.744 -9.860 -7.394 28.542 Atomic orbital electron populations 1.69888 1.06206 1.27191 1.49963 1.24937 0.94744 0.99101 0.94122 0.86803 0.80351 0.83675 0.78652 1.20054 1.21048 1.19184 1.20787 0.88052 0.95035 1.52381 0.90364 1.19950 0.98277 0.90883 0.97382 1.22204 0.69626 1.02321 1.04681 1.47215 1.11062 1.66941 1.06210 1.20776 0.87361 0.77507 0.86092 1.90842 1.79293 1.40465 1.16753 1.21156 0.91270 0.76144 0.82526 1.90803 1.33799 1.41366 1.62850 1.46739 1.08252 1.69071 1.08575 1.21698 0.86829 0.98479 0.92771 1.21982 0.99616 0.95968 0.99971 1.21992 0.96643 0.88698 0.99447 1.62163 1.41245 1.16147 1.06622 1.22875 0.99250 0.95773 0.93595 1.22679 0.94123 0.95041 0.89552 1.87993 1.43360 1.77387 1.21811 1.22670 0.99858 0.90946 0.87935 1.22791 0.94837 0.98323 0.95087 1.16010 0.80442 0.77098 0.85580 1.91026 1.75864 1.49488 1.18520 0.92423 0.95855 0.96086 0.88320 0.88427 0.88349 0.87712 0.89654 0.91078 0.94109 0.89800 0.93744 0.89222 0.92085 0.88354 0.92088 0.88390 0.89346 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.22 9.66 -34.44 -0.33 -14.55 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.03 -0.61 4.36 -27.89 -0.12 -0.73 16 10 C 0.13 2.37 5.80 -4.04 -0.02 2.35 16 11 N -0.57 -9.10 2.66 -121.21 -0.32 -9.42 16 12 C 0.50 7.87 8.31 -11.20 -0.09 7.78 16 13 O -0.41 -7.41 17.88 5.54 0.10 -7.31 16 14 C 0.51 6.77 8.31 -11.20 -0.09 6.68 16 15 O -0.42 -6.08 17.88 5.54 0.10 -5.98 16 16 N -0.58 -6.83 2.66 -121.21 -0.32 -7.16 16 17 C 0.12 1.02 5.86 -4.04 -0.02 1.00 16 18 C -0.14 -1.04 5.47 -26.73 -0.15 -1.19 16 19 C 0.06 0.39 4.96 -3.82 -0.02 0.37 16 20 N -0.54 -3.96 4.73 -234.31 -1.11 -5.06 16 21 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 22 C 0.06 0.44 7.01 37.21 0.26 0.70 16 23 O -0.39 -3.34 10.83 -35.23 -0.38 -3.72 16 24 C 0.06 0.41 7.01 37.20 0.26 0.67 16 25 C 0.02 0.11 5.64 -3.72 -0.02 0.09 16 26 C 0.71 10.39 8.32 -87.82 -0.73 9.66 16 27 O -0.48 -8.10 17.26 5.38 0.09 -8.01 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.55 7.20 -51.92 -0.37 0.17 16 30 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 31 H 0.10 1.75 7.98 -51.93 -0.41 1.33 16 32 H 0.10 1.72 8.10 -51.93 -0.42 1.30 16 33 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.10 0.80 7.97 -51.92 -0.41 0.38 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.57 6.52 -51.93 -0.34 0.23 16 37 H 0.04 0.25 8.12 -51.93 -0.42 -0.18 16 38 H 0.08 0.48 8.04 -51.93 -0.42 0.07 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.61 6.38 -51.93 -0.33 0.28 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 46 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -32.62 385.06 -8.05 -40.67 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -6.91 Total: -5.35 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: -1.20 Total: 14.88 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.98 Total: -47.61 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.09 Total: -25.02 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.62 -8.05 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268642659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.883 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds