Wall clock time and date at job start Tue Mar 31 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.99415 * 2 1 4 4 C 1.38211 * 119.99466 * 180.21289 * 3 2 1 5 5 C 1.38261 * 120.00559 * 359.85034 * 4 3 2 6 6 C 1.38211 * 119.99553 * 359.96444 * 5 4 3 7 7 C 1.38214 * 120.00456 * 179.81309 * 2 1 3 8 8 C 1.50692 * 119.99690 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.47322 * 324.72702 * 8 7 2 10 10 O 1.42900 * 109.47047 * 204.72693 * 8 7 2 11 11 C 1.52998 * 109.47251 * 84.73059 * 8 7 2 12 12 N 1.46506 * 109.47297 * 184.99917 * 11 8 7 13 13 C 1.34777 * 119.99837 * 180.02562 * 12 11 8 14 14 O 1.21279 * 120.00173 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99745 * 180.02562 * 13 12 11 16 16 C 1.50700 * 109.47103 * 179.97438 * 15 13 12 17 17 C 1.37640 * 120.12727 * 264.99649 * 16 15 13 18 18 C 1.38611 * 120.25076 * 179.97438 * 17 16 15 19 19 C 1.38659 * 120.50106 * 0.02562 * 18 17 16 20 20 C 1.37593 * 120.24737 * 0.02562 * 19 18 17 21 21 C 1.40697 * 120.13105 * 84.72091 * 16 15 13 22 22 C 1.41400 * 120.24117 * 359.97438 * 21 16 15 23 23 H 1.07994 * 120.00185 * 333.89741 * 22 21 16 24 24 C 1.39952 * 119.99783 * 153.89514 * 22 21 16 25 25 N 1.30817 * 119.99956 * 343.71743 * 24 22 21 26 26 Si 1.86797 * 119.99651 * 163.71837 * 24 22 21 27 27 H 1.48497 * 109.47245 * 60.00110 * 26 24 22 28 28 H 1.48504 * 109.46821 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47389 * 299.99646 * 26 24 22 30 30 H 1.08999 * 109.47143 * 270.18515 * 1 2 3 31 31 H 1.08996 * 109.47472 * 30.19372 * 1 2 3 32 32 H 1.09007 * 109.46709 * 150.19215 * 1 2 3 33 33 H 1.07992 * 120.00362 * 0.04183 * 3 2 1 34 34 H 1.08004 * 119.99879 * 179.83706 * 4 3 2 35 35 H 1.07994 * 120.00513 * 179.97438 * 5 4 3 36 36 H 1.08004 * 120.00002 * 179.97438 * 6 5 4 37 37 H 0.96704 * 113.99897 * 300.00144 * 10 8 7 38 38 H 1.09004 * 109.47612 * 64.99734 * 11 8 7 39 39 H 1.09006 * 109.46863 * 304.99470 * 11 8 7 40 40 H 0.96998 * 119.99531 * 359.97438 * 12 11 8 41 41 H 1.08995 * 109.47655 * 59.99415 * 15 13 12 42 42 H 1.09006 * 109.46657 * 299.99206 * 15 13 12 43 43 H 1.08004 * 119.87217 * 0.02562 * 17 16 15 44 44 H 1.07997 * 119.74771 * 179.97438 * 18 17 16 45 45 H 1.07998 * 119.87410 * 180.02562 * 19 18 17 46 46 H 1.07997 * 120.12932 * 179.97438 * 20 19 18 47 47 H 0.97000 * 120.00500 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 -0.0044 5 6 4.2718 0.0002 -0.0058 6 6 3.5808 -1.1967 -0.0019 7 6 2.1982 -1.1969 0.0039 8 6 1.4448 -2.5020 0.0087 9 1 0.5367 -2.3951 0.6022 10 8 2.2666 -3.5243 0.5756 11 6 1.0745 -2.8824 -1.4262 12 7 0.2405 -4.0869 -1.4123 13 6 -0.2073 -4.6097 -2.5710 14 8 0.0796 -4.0829 -3.6250 15 6 -1.0657 -5.8484 -2.5567 16 6 -1.4303 -6.2232 -3.9701 17 6 -2.6238 -5.8016 -4.5106 18 6 -2.9615 -6.1444 -5.8105 19 6 -2.1036 -6.9148 -6.5807 20 6 -0.9058 -7.3482 -6.0606 21 6 -0.5494 -7.0005 -4.7443 22 6 0.6824 -7.4340 -4.2017 23 1 1.1519 -6.8698 -3.4096 24 6 1.2930 -8.5942 -4.6913 25 7 0.6024 -9.4451 -5.4057 26 14 3.0940 -8.9276 -4.3246 27 1 3.2930 -9.0101 -2.8553 28 1 3.4974 -10.2117 -4.9521 29 1 3.9235 -7.8260 -4.8754 30 1 -0.3633 0.0033 1.0276 31 1 -0.3634 0.8882 -0.5168 32 1 -0.3633 -0.8918 -0.5109 33 1 1.6582 2.1327 0.0007 34 1 4.1203 2.1329 -0.0071 35 1 5.3517 0.0002 -0.0097 36 1 4.1208 -2.1321 -0.0033 37 1 3.0938 -3.6741 0.0975 38 1 1.9828 -3.0760 -1.9968 39 1 0.5226 -2.0637 -1.8882 40 1 0.0114 -4.5084 -0.5693 41 1 -1.9742 -5.6543 -1.9868 42 1 -0.5143 -6.6671 -2.0941 43 1 -3.2994 -5.2007 -3.9199 44 1 -3.9003 -5.8095 -6.2263 45 1 -2.3767 -7.1756 -7.5925 46 1 -0.2392 -7.9486 -6.6620 47 1 1.0256 -10.2491 -5.7453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305809848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:26 Heat of formation + Delta-G solvation = -75.178256 kcal Electronic energy + Delta-G solvation = -28534.502755 eV Core-core repulsion = 24645.182259 eV Total energy + Delta-G solvation = -3889.320496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18278 -40.50337 -39.13082 -38.03869 -35.49331 -35.30314 -33.98039 -33.40385 -32.25080 -31.33848 -29.79925 -28.21506 -27.67753 -26.77903 -24.59214 -22.81656 -22.67554 -22.19973 -21.81222 -20.86635 -19.07276 -18.53868 -17.95794 -17.41906 -17.22884 -16.96598 -16.34325 -16.24528 -16.02595 -15.77619 -15.42770 -15.30924 -14.95144 -14.81101 -14.50323 -14.38832 -14.34862 -13.99545 -13.55417 -13.46980 -13.35847 -13.16320 -13.06658 -12.90509 -12.75043 -12.65557 -12.59722 -12.47635 -12.11443 -12.00855 -11.88294 -11.32873 -11.30479 -11.19909 -11.02115 -10.74236 -10.04672 -9.76661 -9.53516 -9.21725 -9.15079 -8.58549 -6.28512 0.33595 0.44789 1.00802 1.14550 1.35576 1.46026 1.54624 1.84074 2.20223 2.31161 2.77768 2.80572 3.35833 3.64045 3.75074 3.82676 3.86467 4.02971 4.06051 4.17355 4.20809 4.39573 4.41710 4.46216 4.51637 4.63146 4.67901 4.72445 4.76669 4.78591 4.83007 4.87878 4.92996 5.08296 5.10699 5.20865 5.27867 5.37756 5.47964 5.54213 5.56106 5.58684 5.64077 5.78638 6.04783 6.07534 6.17866 6.22313 6.43169 6.58006 6.67014 6.76052 7.00215 7.12417 7.44669 8.37766 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.002900 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.238713 B = 9651.774292 C =11123.796660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.121 4.121 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.133 4.133 8 C 0.155 3.845 9 H 0.126 0.874 10 O -0.559 6.559 11 C 0.098 3.902 12 N -0.718 5.718 13 C 0.517 3.483 14 O -0.575 6.575 15 C -0.069 4.069 16 C -0.187 4.187 17 C -0.092 4.092 18 C -0.243 4.243 19 C -0.118 4.118 20 C -0.195 4.195 21 C 0.095 3.905 22 C -0.483 4.483 23 H 0.071 0.929 24 C 0.036 3.964 25 N -0.827 5.827 26 Si 0.971 3.029 27 H -0.252 1.252 28 H -0.267 1.267 29 H -0.271 1.271 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.386 0.614 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.415 0.585 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 16.361 15.292 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.137 4.137 7 C -0.134 4.134 8 C 0.095 3.905 9 H 0.144 0.856 10 O -0.366 6.366 11 C -0.026 4.026 12 N -0.373 5.373 13 C 0.305 3.695 14 O -0.454 6.454 15 C -0.109 4.109 16 C -0.189 4.189 17 C -0.110 4.110 18 C -0.262 4.262 19 C -0.136 4.136 20 C -0.214 4.214 21 C 0.093 3.907 22 C -0.513 4.513 23 H 0.089 0.911 24 C -0.179 4.179 25 N -0.453 5.453 26 Si 0.792 3.208 27 H -0.176 1.176 28 H -0.191 1.191 29 H -0.196 1.196 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.236 0.764 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.252 0.748 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.136 16.461 14.854 22.555 hybrid contribution 1.200 -0.536 -0.562 1.430 sum 5.336 15.926 14.292 22.054 Atomic orbital electron populations 1.20970 0.90148 1.03558 1.03438 1.20001 0.97030 0.92615 0.98894 1.21339 0.94771 0.97952 1.00762 1.21514 0.94518 0.99004 0.98851 1.21404 1.01038 0.92308 1.00439 1.21155 0.93504 0.99441 0.99581 1.20308 0.94737 0.94965 1.03399 1.20870 0.93860 0.83937 0.91818 0.85630 1.86593 1.36231 1.56789 1.57026 1.21963 0.95079 0.87845 0.97730 1.45794 1.53158 1.29314 1.09009 1.21145 0.79738 0.85454 0.83146 1.90667 1.58970 1.62952 1.32796 1.20279 0.99928 0.94795 0.95888 1.19558 0.95932 1.07679 0.95750 1.20751 0.96168 0.98626 0.95440 1.20724 1.01439 1.07815 0.96235 1.20949 0.95164 0.98729 0.98787 1.21309 0.98112 1.05522 0.96495 1.17747 0.92282 0.89678 0.91020 1.19593 1.04936 1.07887 1.18844 0.91087 1.26675 1.03513 0.94716 0.92981 1.69873 1.38697 1.08759 1.27991 0.85423 0.77215 0.78059 0.80091 1.17615 1.19137 1.19589 0.89539 0.90318 0.91703 0.84166 0.83926 0.84206 0.84842 0.76380 0.93021 0.91356 0.74799 0.86802 0.88553 0.86435 0.86663 0.87717 0.88565 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.22 71.24 0.66 -1.14 16 2 C -0.09 -1.52 5.88 -19.86 -0.12 -1.63 16 3 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 4 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 6 C -0.12 -2.12 9.30 22.27 0.21 -1.92 16 7 C -0.13 -2.54 5.07 -19.87 -0.10 -2.64 16 8 C 0.15 2.94 2.54 29.84 0.08 3.02 16 9 H 0.13 2.10 7.01 -2.39 -0.02 2.09 16 10 O -0.56 -10.88 12.94 -148.98 -1.93 -12.81 16 11 C 0.10 2.48 5.04 86.38 0.44 2.91 16 12 N -0.72 -19.91 5.50 -463.04 -2.55 -22.46 16 13 C 0.52 19.88 7.44 87.66 0.65 20.54 16 14 O -0.58 -28.15 16.03 -3.03 -0.05 -28.20 16 15 C -0.07 -2.66 5.18 29.10 0.15 -2.51 16 16 C -0.19 -9.11 4.43 -19.40 -0.09 -9.20 16 17 C -0.09 -4.17 9.66 22.22 0.21 -3.96 16 18 C -0.24 -11.21 10.05 22.46 0.23 -10.98 16 19 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 20 C -0.19 -10.97 8.69 22.73 0.20 -10.77 16 21 C 0.09 5.29 5.56 -21.29 -0.12 5.17 16 22 C -0.48 -26.42 8.14 23.46 0.19 -26.23 16 23 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16 24 C 0.04 1.84 5.16 85.26 0.44 2.28 16 25 N -0.83 -44.45 10.95 21.83 0.24 -44.21 16 26 Si 0.97 39.50 29.59 68.60 2.03 41.53 16 27 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 28 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 32 H 0.06 1.03 5.47 -2.38 -0.01 1.02 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.13 1.94 6.41 -2.91 -0.02 1.92 16 37 H 0.39 5.94 7.32 -74.05 -0.54 5.39 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.84 7.00 -2.38 -0.02 1.82 16 40 H 0.42 9.02 8.47 -92.71 -0.79 8.24 16 41 H 0.11 3.42 8.05 -2.39 -0.02 3.40 16 42 H 0.10 3.70 7.08 -2.38 -0.02 3.69 16 43 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 45 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 46 H 0.10 5.66 6.20 -2.91 -0.02 5.64 16 47 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -72.76 388.22 1.34 -71.42 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: -0.31 Total: 42.86 kcal Atomic # 6 Polarization: -52.04 SS G_CDS: 3.91 Total: -48.13 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -2.31 Total: -66.68 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.98 Total: -41.01 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -72.76 1.34 -71.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305809848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.762 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds