Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38049 * 126.28927 * 2 1 4 4 C 1.47425 * 126.41442 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00271 * 51.19204 * 4 3 2 6 6 N 1.34778 * 119.99696 * 231.19165 * 4 3 2 7 7 C 1.46862 * 120.67896 * 355.42521 * 6 4 3 8 8 C 1.53585 * 108.99339 * 123.39350 * 7 6 4 9 9 C 1.53207 * 109.35492 * 57.95448 * 8 7 6 10 10 C 1.53136 * 108.98946 * 301.93047 * 9 8 7 11 11 C 1.52786 * 117.79005 * 269.64859 * 10 9 8 12 12 C 1.52762 * 117.84877 * 200.65327 * 10 9 8 13 13 F 1.39894 * 117.50077 * 215.20806 * 12 10 9 14 14 F 1.39903 * 117.50186 * 0.26340 * 12 10 9 15 15 C 1.47154 * 120.67661 * 175.70743 * 6 4 3 16 16 C 1.41297 * 107.16827 * 180.26679 * 3 2 1 17 17 N 1.30445 * 108.02055 * 359.59045 * 16 3 2 18 18 N 1.34256 * 126.29160 * 180.02562 * 2 1 3 19 19 C 1.46498 * 125.75486 * 359.96811 * 18 2 1 20 20 C 1.50701 * 109.46851 * 90.00752 * 19 18 2 21 21 H 1.07998 * 119.99892 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99791 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00430 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99846 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47111 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46920 * 119.99957 * 24 22 20 27 27 H 1.48500 * 109.47065 * 239.99955 * 24 22 20 28 28 H 1.08996 * 109.47467 * 89.99597 * 1 2 3 29 29 H 1.08996 * 109.47005 * 209.99762 * 1 2 3 30 30 H 1.08998 * 109.46959 * 329.99472 * 1 2 3 31 31 H 1.09008 * 109.50858 * 243.36515 * 7 6 4 32 32 H 1.09005 * 109.50500 * 3.49183 * 7 6 4 33 33 H 1.09005 * 109.61745 * 297.93064 * 8 7 6 34 34 H 1.08993 * 109.42195 * 177.86599 * 8 7 6 35 35 H 1.08997 * 109.55159 * 182.07390 * 9 8 7 36 36 H 1.08997 * 109.62883 * 61.83001 * 9 8 7 37 37 H 1.09005 * 117.50775 * 359.64200 * 11 10 9 38 38 H 1.08996 * 117.50662 * 144.70302 * 11 10 9 39 39 H 1.09005 * 109.74518 * 349.95916 * 15 6 4 40 40 H 1.09000 * 109.74698 * 110.68070 * 15 6 4 41 41 H 1.07996 * 125.98751 * 179.73952 * 16 3 2 42 42 H 1.08999 * 109.47159 * 210.00835 * 19 18 2 43 43 H 1.08999 * 109.46991 * 330.00543 * 19 18 2 44 44 H 0.96993 * 120.00632 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5203 0.0005 5 8 1.0752 2.9044 0.8215 6 7 2.3835 3.3814 -0.9090 7 6 3.4359 2.9598 -1.8426 8 6 2.9519 3.1954 -3.2810 9 6 2.6022 4.6759 -3.4629 10 6 1.5278 5.0632 -2.4427 11 6 0.0649 4.9146 -2.8578 12 6 0.6877 6.3067 -2.7283 13 9 0.2995 7.0890 -1.6355 14 9 0.9527 7.0081 -3.9094 15 6 1.8880 4.7650 -0.9828 16 6 3.6591 0.6499 -0.0063 17 7 3.6340 -0.6543 -0.0009 18 7 2.3017 -1.0821 -0.0005 19 6 1.8501 -2.4758 -0.0004 20 6 1.6948 -2.9535 -1.4213 21 1 1.9105 -2.2856 -2.2421 22 6 1.2764 -4.2428 -1.6732 23 7 1.0132 -5.0560 -0.6736 24 14 1.0832 -4.8348 -3.4344 25 1 1.4396 -3.7361 -4.3677 26 1 1.9818 -5.9936 -3.6685 27 1 -0.3248 -5.2453 -3.6670 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 4.3394 3.5416 -1.6595 32 1 3.6487 1.9007 -1.6970 33 1 2.0684 2.5869 -3.4741 34 1 3.7424 2.9202 -3.9790 35 1 2.2234 4.8400 -4.4717 36 1 3.4923 5.2846 -3.3040 37 1 -0.1382 4.5454 -3.8631 38 1 -0.6472 4.6085 -2.0914 39 1 1.0030 4.8732 -0.3556 40 1 2.6642 5.4526 -0.6471 41 1 4.5449 1.2677 -0.0119 42 1 2.5849 -3.0958 0.5131 43 1 0.8916 -2.5471 0.5137 44 1 0.7192 -5.9631 -0.8508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898294224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = -50.212530 kcal Electronic energy + Delta-G solvation = -30052.999491 eV Core-core repulsion = 25642.824812 eV Total energy + Delta-G solvation = -4410.174680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.71268 -48.39198 -42.40061 -40.83677 -38.90661 -36.22481 -35.71130 -33.83812 -33.14330 -32.81351 -29.99152 -28.68729 -28.12439 -26.58662 -25.31207 -23.90782 -23.34965 -22.83870 -21.42726 -20.42523 -19.51091 -18.85683 -18.67733 -18.38516 -17.47637 -17.28010 -16.92414 -16.83182 -16.40090 -15.91440 -15.74558 -15.48675 -15.10405 -15.05335 -14.92817 -14.71925 -14.57500 -14.43844 -14.34457 -14.06459 -13.88084 -13.78597 -13.58922 -13.52544 -13.26781 -13.08236 -12.93000 -12.71021 -12.33388 -12.25764 -12.08838 -11.97539 -11.78351 -11.74007 -11.41209 -11.00572 -10.74706 -10.67199 -10.20420 -9.72415 -9.35777 -8.35407 -6.51838 0.82108 1.36208 1.38527 1.41538 1.50767 1.55135 1.77922 2.06363 2.12696 2.32362 2.36171 2.97019 3.13940 3.19375 3.56402 3.66184 3.69810 3.73808 4.00304 4.08255 4.12287 4.18138 4.32636 4.45685 4.51200 4.57050 4.58547 4.60395 4.64485 4.75463 4.78487 4.84421 4.87321 4.92019 4.98584 5.05208 5.12351 5.17740 5.34897 5.51046 5.52379 5.69633 5.77139 6.07834 6.36588 6.58015 6.86256 7.19119 7.19839 8.72684 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.002990 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.724308 B = 9362.305930 C = 9976.742289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.135 3.865 3 C -0.320 4.320 4 C 0.613 3.387 5 O -0.579 6.579 6 N -0.597 5.597 7 C 0.094 3.906 8 C -0.126 4.126 9 C -0.079 4.079 10 C -0.129 4.129 11 C -0.159 4.159 12 C 0.196 3.804 13 F -0.170 7.170 14 F -0.163 7.163 15 C 0.149 3.851 16 C 0.076 3.924 17 N -0.332 5.332 18 N -0.336 5.336 19 C 0.267 3.733 20 C -0.550 4.550 21 H 0.057 0.943 22 C 0.022 3.978 23 N -0.919 5.919 24 Si 0.972 3.028 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.271 1.271 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.219 0.781 42 H 0.028 0.972 43 H 0.048 0.952 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 20.876 -7.163 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.000 4.000 3 C -0.336 4.336 4 C 0.402 3.598 5 O -0.459 6.459 6 N -0.329 5.329 7 C -0.028 4.028 8 C -0.164 4.164 9 C -0.116 4.116 10 C -0.131 4.131 11 C -0.197 4.197 12 C 0.159 3.841 13 F -0.151 7.151 14 F -0.144 7.144 15 C 0.027 3.973 16 C -0.110 4.110 17 N -0.153 5.153 18 N -0.114 5.114 19 C 0.149 3.851 20 C -0.588 4.588 21 H 0.075 0.925 22 C -0.179 4.179 23 N -0.558 5.558 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.236 0.764 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.496 19.688 -6.669 20.936 hybrid contribution -0.738 0.204 -0.441 0.883 sum 1.758 19.891 -7.110 21.197 Atomic orbital electron populations 1.20518 0.86111 1.04039 1.04080 1.21761 0.95658 0.86488 0.96105 1.19757 0.93580 0.92633 1.27604 1.17260 0.79134 0.83799 0.79593 1.90704 1.36607 1.78911 1.39709 1.47865 1.39712 1.10886 1.34397 1.22247 0.89837 1.02414 0.88321 1.21929 1.02514 0.95600 0.96348 1.21202 0.96901 0.96710 0.96794 1.23272 0.95469 0.95441 0.98890 1.24566 0.96221 0.92126 1.06785 1.20194 1.07392 0.81601 0.74911 1.93008 1.91693 1.77401 1.52950 1.93006 1.94447 1.81297 1.45609 1.21102 1.01291 0.82492 0.92417 1.24329 0.97209 0.91416 0.98049 1.77100 0.98378 1.14102 1.25678 1.49012 1.03238 1.07616 1.51499 1.19353 0.95100 0.72399 0.98287 1.21420 1.47510 0.98398 0.91462 0.92500 1.25753 0.93932 0.96031 1.02214 1.70010 1.45070 1.07593 1.33096 0.85287 0.78260 0.78267 0.78569 1.19177 1.20187 1.19611 0.89182 0.90877 0.88844 0.88219 0.89373 0.92598 0.87984 0.89738 0.88788 0.84300 0.86144 0.89860 0.88683 0.76447 0.95350 0.93426 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.05 9.93 71.24 0.71 -2.34 16 2 C 0.13 5.25 7.01 42.14 0.30 5.55 16 3 C -0.32 -10.93 5.13 -20.15 -0.10 -11.03 16 4 C 0.61 18.91 7.31 86.66 0.63 19.54 16 5 O -0.58 -21.30 15.68 -4.02 -0.06 -21.36 16 6 N -0.60 -13.37 2.97 -821.37 -2.44 -15.81 16 7 C 0.09 1.58 5.95 86.51 0.52 2.10 16 8 C -0.13 -1.77 6.10 30.86 0.19 -1.59 16 9 C -0.08 -0.96 5.36 30.71 0.16 -0.79 16 10 C -0.13 -2.05 2.10 -52.19 -0.11 -2.16 16 11 C -0.16 -2.49 9.89 30.54 0.30 -2.19 16 12 C 0.20 3.47 5.15 30.53 0.16 3.63 16 13 F -0.17 -3.61 17.15 44.97 0.77 -2.83 16 14 F -0.16 -3.04 17.02 44.97 0.77 -2.28 16 15 C 0.15 2.90 5.82 86.35 0.50 3.40 16 16 C 0.08 2.45 9.66 85.65 0.83 3.28 16 17 N -0.33 -13.82 12.50 -56.27 -0.70 -14.52 16 18 N -0.34 -14.97 3.56 -336.70 -1.20 -16.17 16 19 C 0.27 13.46 5.97 85.63 0.51 13.97 16 20 C -0.55 -29.10 9.39 25.60 0.24 -28.86 16 21 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 22 C 0.02 1.14 5.46 84.65 0.46 1.60 16 23 N -0.92 -50.57 13.29 21.45 0.28 -50.29 16 24 Si 0.97 41.09 29.54 68.60 2.03 43.12 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 29 H 0.07 2.55 7.05 -2.39 -0.02 2.53 16 30 H 0.09 3.01 7.16 -2.39 -0.02 2.99 16 31 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.09 1.83 4.43 -2.38 -0.01 1.82 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 0.93 7.91 -2.39 -0.02 0.91 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 1.96 7.01 -2.38 -0.02 1.95 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.22 4.88 7.65 -2.91 -0.02 4.85 16 42 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 2.42 7.02 -2.39 -0.02 2.40 16 44 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -65.83 370.87 5.77 -60.06 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.03 Total: 15.96 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.29 Total: 4.11 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -4.06 Total: -96.78 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.36 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 1.54 Total: -5.11 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -65.83 5.77 -60.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898294224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.849 kcal (2) G-P(sol) polarization free energy of solvation -65.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds