Wall clock time and date at job start Tue Mar 31 2020 22:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35450 * 126.78002 * 2 1 4 4 C 1.41381 * 103.98546 * 180.13558 * 3 2 1 5 5 C 1.50703 * 126.80325 * 179.88692 * 4 3 2 6 6 O 1.42894 * 109.46871 * 359.71003 * 5 4 3 7 7 C 1.42906 * 114.00133 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47214 * 179.97438 * 7 6 5 9 9 O 1.21288 * 120.00257 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99787 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99699 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.45313 * 35.03228 * 11 10 8 13 13 C 1.53042 * 109.45824 * 275.06193 * 11 10 8 14 14 C 1.53194 * 109.31144 * 178.61443 * 13 11 10 15 15 N 1.46927 * 108.77449 * 54.64116 * 14 13 11 16 16 C 1.36933 * 120.63441 * 126.66624 * 15 14 13 17 17 H 1.08008 * 119.99663 * 331.59728 * 16 15 14 18 18 C 1.38805 * 120.00459 * 151.60044 * 16 15 14 19 19 N 1.31622 * 119.99962 * 343.12018 * 18 16 15 20 20 Si 1.86795 * 120.00332 * 163.12475 * 18 16 15 21 21 H 1.48496 * 109.47227 * 59.99553 * 20 18 16 22 22 H 1.48505 * 109.47370 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47123 * 299.99866 * 20 18 16 24 24 C 1.46927 * 118.73757 * 306.38750 * 15 14 13 25 25 C 1.53037 * 109.46013 * 154.99905 * 11 10 8 26 26 H 1.08999 * 109.52624 * 61.41434 * 25 11 10 27 27 O 1.42907 * 109.49536 * 301.33446 * 25 11 10 28 28 N 1.30181 * 106.39606 * 359.62358 * 4 3 2 29 29 O 1.20919 * 111.60233 * 0.24427 * 28 4 3 30 30 H 1.08993 * 109.47554 * 180.30171 * 1 2 3 31 31 H 1.08997 * 109.47352 * 300.30749 * 1 2 3 32 32 H 1.09004 * 109.46950 * 60.30136 * 1 2 3 33 33 H 1.07998 * 128.00600 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47153 * 239.71228 * 5 4 3 35 35 H 1.08995 * 109.47062 * 119.70830 * 5 4 3 36 36 H 1.09003 * 109.46753 * 59.99719 * 7 6 5 37 37 H 1.08999 * 109.46679 * 300.00248 * 7 6 5 38 38 H 0.96993 * 120.00153 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.49938 * 298.56874 * 13 11 10 40 40 H 1.09003 * 109.49272 * 58.63619 * 13 11 10 41 41 H 1.08999 * 109.58880 * 294.84826 * 14 13 11 42 42 H 1.08998 * 109.58612 * 174.42599 * 14 13 11 43 43 H 0.96995 * 120.00418 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.59079 * 173.39546 * 24 15 14 45 45 H 1.08999 * 109.58827 * 293.68302 * 24 15 14 46 46 H 0.96705 * 113.99418 * 180.16270 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5371 -0.0032 5 6 4.9212 1.2998 -0.0070 6 8 4.6501 2.7028 -0.0137 7 6 5.8217 3.5211 -0.0171 8 6 5.4199 4.9735 -0.0247 9 8 4.2459 5.2780 -0.0264 10 7 6.3653 5.9342 -0.0295 11 6 5.9746 7.3461 -0.0363 12 1 5.0668 7.4745 0.5532 13 6 5.7158 7.7965 -1.4758 14 6 5.2742 9.2635 -1.4760 15 7 6.2835 10.0612 -0.7665 16 6 6.8460 11.1607 -1.3580 17 1 6.9329 11.2102 -2.4334 18 6 7.3047 12.2115 -0.5756 19 7 6.9149 12.3183 0.6771 20 14 8.4750 13.4742 -1.3003 21 1 7.8266 14.1440 -2.4562 22 1 8.8124 14.4866 -0.2676 23 1 9.7160 12.7961 -1.7535 24 6 6.6734 9.6605 0.5923 25 6 7.0992 8.1891 0.5693 26 1 8.0008 8.0808 -0.0335 27 8 7.3611 7.7475 1.9029 28 7 3.4763 -0.7566 0.0034 29 8 2.3095 -1.0737 0.0053 30 1 -0.3634 -1.0276 0.0054 31 1 -0.3634 0.5186 0.8872 32 1 -0.3633 0.5092 -0.8927 33 1 2.0346 2.1270 -0.0004 34 1 5.4945 1.0363 -0.8958 35 1 5.4946 1.0448 0.8841 36 1 6.4141 3.3037 -0.9059 37 1 6.4134 3.3120 0.8741 38 1 7.3041 5.6907 -0.0277 39 1 6.6301 7.6917 -2.0598 40 1 4.9312 7.1799 -1.9144 41 1 4.3133 9.3559 -0.9698 42 1 5.1841 9.6178 -2.5029 43 1 7.2350 13.0527 1.2237 44 1 7.5065 10.2768 0.9301 45 1 5.8274 9.7877 1.2677 46 1 8.0628 8.2406 2.3498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099891052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:04 Heat of formation + Delta-G solvation = -42.399346 kcal Electronic energy + Delta-G solvation = -29100.131191 eV Core-core repulsion = 24801.382832 eV Total energy + Delta-G solvation = -4298.748359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.18555 -39.91856 -38.44476 -37.49576 -35.30483 -34.52383 -34.33484 -33.61792 -32.25559 -30.05369 -29.02418 -28.58683 -28.05615 -26.75242 -24.91171 -23.17755 -22.50606 -21.84163 -20.77249 -20.21869 -19.48187 -17.98136 -17.73410 -17.34579 -16.87560 -16.69978 -16.53641 -16.50594 -15.60638 -15.09233 -14.83521 -14.63738 -14.25499 -13.91603 -13.87006 -13.70499 -13.61638 -13.41471 -13.24141 -12.92417 -12.68536 -12.59401 -12.22958 -12.11527 -11.96738 -11.71304 -11.44910 -11.24380 -10.84425 -10.82685 -10.63286 -10.44476 -10.25366 -10.04939 -9.93338 -9.85906 -9.55545 -9.54872 -9.36952 -8.80236 -8.56203 -6.80780 -5.89855 -3.34063 1.18432 1.95582 2.54641 2.72401 2.85317 3.31548 3.37964 3.38554 3.55079 4.11562 4.37016 4.38956 4.53516 4.67357 4.74999 4.85031 4.87962 4.90664 5.02011 5.04983 5.05051 5.12007 5.26851 5.36007 5.41198 5.42550 5.54057 5.56177 5.86596 5.87631 5.96898 6.05258 6.18196 6.40630 6.42687 6.59543 6.67973 6.81259 6.88309 7.08491 7.42163 7.65595 7.69961 7.96470 8.05344 8.33083 8.36818 9.08394 9.70995 10.27464 11.18559 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.001861 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.153335 B =15038.808763 C =15395.025134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.204 4.204 4 C 0.018 3.982 5 C 0.143 3.857 6 O -0.355 6.355 7 C 0.046 3.954 8 C 0.513 3.487 9 O -0.522 6.522 10 N -0.714 5.714 11 C 0.164 3.836 12 H 0.088 0.912 13 C -0.139 4.139 14 C 0.144 3.856 15 N -0.589 5.589 16 C -0.257 4.257 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.148 3.852 25 C 0.072 3.928 26 H 0.052 0.948 27 O -0.573 6.573 28 N -0.363 5.363 29 O 0.099 5.901 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.179 0.821 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.397 0.603 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.256 0.744 44 H 0.093 0.907 45 H 0.030 0.970 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -22.864 -0.439 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.226 4.226 4 C -0.140 4.140 5 C 0.066 3.934 6 O -0.272 6.272 7 C -0.034 4.034 8 C 0.297 3.703 9 O -0.398 6.398 10 N -0.365 5.365 11 C 0.061 3.939 12 H 0.107 0.893 13 C -0.180 4.180 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.021 3.979 25 C 0.011 3.989 26 H 0.070 0.930 27 O -0.378 6.378 28 N -0.069 5.069 29 O 0.032 5.968 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.196 0.804 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.048 0.952 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.593 -23.858 -0.455 24.300 hybrid contribution 1.558 1.689 -0.154 2.303 sum -3.035 -22.169 -0.610 22.384 Atomic orbital electron populations 1.20343 0.83791 1.04532 1.04397 1.24562 0.96485 0.85912 1.03311 1.22466 0.90641 1.01594 1.07861 1.23116 0.97173 0.90104 1.03579 1.20309 0.90432 0.80676 1.02023 1.87961 1.29237 1.14476 1.95563 1.22262 0.88436 0.89854 1.02831 1.20031 0.86473 0.86640 0.77156 1.90730 1.17745 1.83121 1.48165 1.45981 1.09139 1.06514 1.74876 1.21005 0.98463 0.77478 0.96967 0.89348 1.22420 1.01397 0.99286 0.94866 1.20946 0.91751 0.88535 0.97007 1.44009 1.43667 1.29511 1.14091 1.19158 1.33765 0.94057 0.91639 0.91405 1.25098 1.00875 0.96986 0.96642 1.70013 1.44626 1.32258 1.07715 0.86336 0.81179 0.80867 0.78182 1.20751 1.21577 1.20991 1.21411 1.00613 0.88751 0.87104 1.22982 0.96296 0.97288 0.82296 0.92981 1.86412 1.60602 1.62325 1.28461 1.73767 0.97427 1.15284 1.20410 1.84801 1.11035 1.33227 1.67726 0.89960 0.89020 0.89027 0.80383 0.90694 0.90677 0.90050 0.89944 0.76934 0.91985 0.91763 0.95807 0.92065 0.93395 0.88860 0.95180 0.77693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.35 7.49 -35.30 -0.26 -0.62 16 3 C -0.20 -2.22 10.45 -39.38 -0.41 -2.63 16 4 C 0.02 0.21 7.28 -82.10 -0.60 -0.39 16 5 C 0.14 1.39 6.56 36.01 0.24 1.63 16 6 O -0.36 -4.35 9.37 -55.14 -0.52 -4.86 16 7 C 0.05 0.47 6.42 36.00 0.23 0.70 16 8 C 0.51 7.54 7.87 -10.99 -0.09 7.45 16 9 O -0.52 -10.06 16.16 -14.36 -0.23 -10.30 16 10 N -0.71 -9.98 4.92 -53.76 -0.26 -10.25 16 11 C 0.16 2.87 2.12 -67.89 -0.14 2.73 16 12 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 13 C -0.14 -2.44 5.65 -26.61 -0.15 -2.60 16 14 C 0.14 2.99 6.52 -3.71 -0.02 2.97 16 15 N -0.59 -14.14 2.99 -172.32 -0.52 -14.66 16 16 C -0.26 -6.75 9.58 -15.06 -0.14 -6.89 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -25.20 11.20 55.49 0.62 -24.58 16 20 Si 0.90 20.84 29.59 -169.99 -5.03 15.81 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 C 0.15 3.35 4.92 -3.71 -0.02 3.33 16 25 C 0.07 1.30 3.14 -26.61 -0.08 1.21 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 O -0.57 -9.35 13.16 -35.23 -0.46 -9.82 16 28 N -0.36 -4.37 12.07 33.42 0.40 -3.96 16 29 O 0.10 1.07 11.20 17.16 0.19 1.26 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.18 1.95 8.05 -52.49 -0.42 1.53 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.40 4.39 8.60 -40.82 -0.35 4.04 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.38 4.88 9.08 45.56 0.41 5.29 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -34.10 386.55 -7.25 -41.35 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.10 Total: 7.25 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.17 Total: 6.92 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.24 Total: -53.45 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.02 Total: -23.72 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.10 -7.25 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099891052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.046 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds