Wall clock time and date at job start Tue Mar 31 2020 22:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35450 * 126.78002 * 2 1 4 4 C 1.41381 * 103.98546 * 180.13558 * 3 2 1 5 5 C 1.50703 * 126.80325 * 179.88692 * 4 3 2 6 6 O 1.42894 * 109.46871 * 359.71003 * 5 4 3 7 7 C 1.42906 * 114.00133 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47214 * 179.97438 * 7 6 5 9 9 O 1.21288 * 120.00257 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99787 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99699 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.45313 * 35.03228 * 11 10 8 13 13 C 1.53042 * 109.45824 * 275.06193 * 11 10 8 14 14 C 1.53194 * 109.31144 * 178.61443 * 13 11 10 15 15 N 1.46927 * 108.77449 * 54.64116 * 14 13 11 16 16 C 1.36933 * 120.63441 * 126.66624 * 15 14 13 17 17 H 1.08008 * 119.99663 * 331.59728 * 16 15 14 18 18 C 1.38805 * 120.00459 * 151.60044 * 16 15 14 19 19 N 1.31622 * 119.99962 * 343.12018 * 18 16 15 20 20 Si 1.86795 * 120.00332 * 163.12475 * 18 16 15 21 21 H 1.48496 * 109.47227 * 59.99553 * 20 18 16 22 22 H 1.48505 * 109.47370 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47123 * 299.99866 * 20 18 16 24 24 C 1.46927 * 118.73757 * 306.38750 * 15 14 13 25 25 C 1.53037 * 109.46013 * 154.99905 * 11 10 8 26 26 H 1.08999 * 109.52624 * 61.41434 * 25 11 10 27 27 O 1.42907 * 109.49536 * 301.33446 * 25 11 10 28 28 N 1.30181 * 106.39606 * 359.62358 * 4 3 2 29 29 O 1.20919 * 111.60233 * 0.24427 * 28 4 3 30 30 H 1.08993 * 109.47554 * 180.30171 * 1 2 3 31 31 H 1.08997 * 109.47352 * 300.30749 * 1 2 3 32 32 H 1.09004 * 109.46950 * 60.30136 * 1 2 3 33 33 H 1.07998 * 128.00600 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47153 * 239.71228 * 5 4 3 35 35 H 1.08995 * 109.47062 * 119.70830 * 5 4 3 36 36 H 1.09003 * 109.46753 * 59.99719 * 7 6 5 37 37 H 1.08999 * 109.46679 * 300.00248 * 7 6 5 38 38 H 0.96993 * 120.00153 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.49938 * 298.56874 * 13 11 10 40 40 H 1.09003 * 109.49272 * 58.63619 * 13 11 10 41 41 H 1.08999 * 109.58880 * 294.84826 * 14 13 11 42 42 H 1.08998 * 109.58612 * 174.42599 * 14 13 11 43 43 H 0.96995 * 120.00418 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.59079 * 173.39546 * 24 15 14 45 45 H 1.08999 * 109.58827 * 293.68302 * 24 15 14 46 46 H 0.96705 * 113.99418 * 180.16270 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5371 -0.0032 5 6 4.9212 1.2998 -0.0070 6 8 4.6501 2.7028 -0.0137 7 6 5.8217 3.5211 -0.0171 8 6 5.4199 4.9735 -0.0247 9 8 4.2459 5.2780 -0.0264 10 7 6.3653 5.9342 -0.0295 11 6 5.9746 7.3461 -0.0363 12 1 5.0668 7.4745 0.5532 13 6 5.7158 7.7965 -1.4758 14 6 5.2742 9.2635 -1.4760 15 7 6.2835 10.0612 -0.7665 16 6 6.8460 11.1607 -1.3580 17 1 6.9329 11.2102 -2.4334 18 6 7.3047 12.2115 -0.5756 19 7 6.9149 12.3183 0.6771 20 14 8.4750 13.4742 -1.3003 21 1 7.8266 14.1440 -2.4562 22 1 8.8124 14.4866 -0.2676 23 1 9.7160 12.7961 -1.7535 24 6 6.6734 9.6605 0.5923 25 6 7.0992 8.1891 0.5693 26 1 8.0008 8.0808 -0.0335 27 8 7.3611 7.7475 1.9029 28 7 3.4763 -0.7566 0.0034 29 8 2.3095 -1.0737 0.0053 30 1 -0.3634 -1.0276 0.0054 31 1 -0.3634 0.5186 0.8872 32 1 -0.3633 0.5092 -0.8927 33 1 2.0346 2.1270 -0.0004 34 1 5.4945 1.0363 -0.8958 35 1 5.4946 1.0448 0.8841 36 1 6.4141 3.3037 -0.9059 37 1 6.4134 3.3120 0.8741 38 1 7.3041 5.6907 -0.0277 39 1 6.6301 7.6917 -2.0598 40 1 4.9312 7.1799 -1.9144 41 1 4.3133 9.3559 -0.9698 42 1 5.1841 9.6178 -2.5029 43 1 7.2350 13.0527 1.2237 44 1 7.5065 10.2768 0.9301 45 1 5.8274 9.7877 1.2677 46 1 8.0628 8.2406 2.3498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099891052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:04 Heat of formation + Delta-G solvation = -68.432508 kcal Electronic energy + Delta-G solvation = -29101.260074 eV Core-core repulsion = 24801.382832 eV Total energy + Delta-G solvation = -4299.877242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.97272 -41.14476 -39.66518 -38.63773 -36.88385 -35.80419 -35.27445 -34.28411 -33.98640 -31.58761 -30.58900 -29.68328 -28.62189 -27.76981 -26.57217 -24.17475 -23.93120 -23.43802 -21.72955 -21.31497 -20.98457 -19.00370 -18.77651 -18.51117 -18.10276 -17.95426 -17.77312 -17.33605 -16.95913 -16.49341 -16.01221 -15.74072 -15.60443 -15.42777 -15.03210 -15.00508 -14.54278 -14.41524 -14.15799 -14.01444 -13.87899 -13.71511 -13.38518 -13.34516 -13.24730 -13.04014 -12.88097 -12.61787 -12.56317 -12.17827 -12.09960 -12.03716 -11.88472 -11.42424 -11.39030 -11.00134 -10.78365 -10.67005 -10.59628 -10.27599 -10.05796 -8.76259 -7.90821 -5.38699 0.43797 1.16223 1.49855 1.50503 1.58195 1.59923 1.64338 2.16467 2.49764 2.60743 3.11602 3.26305 3.40137 3.63146 3.64805 3.74652 3.92969 4.05529 4.06655 4.16200 4.22263 4.27092 4.31268 4.36590 4.41774 4.42098 4.46111 4.47259 4.71263 4.71905 4.88048 4.89053 4.94312 4.97930 5.04467 5.16017 5.23257 5.32812 5.46119 5.56633 5.63700 5.88880 6.33311 6.59014 6.83205 7.09990 7.19098 7.27133 7.77263 8.30520 9.15663 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.001861 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.153335 B =15038.808763 C =15395.025134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.235 4.235 4 C 0.006 3.994 5 C 0.143 3.857 6 O -0.385 6.385 7 C 0.052 3.948 8 C 0.508 3.492 9 O -0.576 6.576 10 N -0.700 5.700 11 C 0.172 3.828 12 H 0.052 0.948 13 C -0.122 4.122 14 C 0.140 3.860 15 N -0.604 5.604 16 C -0.266 4.266 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.273 1.273 24 C 0.156 3.844 25 C 0.093 3.907 26 H 0.070 0.930 27 O -0.573 6.573 28 N -0.384 5.384 29 O 0.091 5.909 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.416 0.584 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.006 0.994 42 H 0.067 0.933 43 H 0.252 0.748 44 H 0.071 0.929 45 H -0.007 1.007 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 -24.743 -1.403 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.256 4.256 4 C -0.152 4.152 5 C 0.066 3.934 6 O -0.304 6.304 7 C -0.027 4.027 8 C 0.295 3.705 9 O -0.455 6.455 10 N -0.353 5.353 11 C 0.066 3.934 12 H 0.071 0.929 13 C -0.162 4.162 14 C 0.014 3.986 15 N -0.329 5.329 16 C -0.396 4.396 17 H 0.091 0.909 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.799 3.201 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.199 1.199 24 C 0.029 3.971 25 C 0.032 3.968 26 H 0.088 0.912 27 O -0.380 6.380 28 N -0.092 5.092 29 O 0.026 5.974 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.188 0.812 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.011 0.989 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.137 -25.785 -1.427 26.014 hybrid contribution 1.001 2.275 0.178 2.492 sum -2.136 -23.510 -1.249 23.640 Atomic orbital electron populations 1.20587 0.80799 1.06142 1.05556 1.25222 0.97947 0.84877 1.00601 1.22532 0.91216 1.01780 1.10090 1.23544 0.98291 0.90258 1.03070 1.20478 0.89841 0.79237 1.03802 1.87918 1.30707 1.15799 1.95933 1.22336 0.88141 0.86109 1.06070 1.20906 0.85592 0.88566 0.75485 1.90715 1.20070 1.84179 1.50521 1.45712 1.10273 1.04856 1.74429 1.20624 0.96801 0.79730 0.96203 0.92944 1.22196 1.02125 0.96686 0.95223 1.21048 0.90473 0.90400 0.96644 1.44260 1.44511 1.29628 1.14466 1.19512 1.33328 0.94690 0.92065 0.90948 1.25864 1.02509 0.99002 0.97041 1.70180 1.45983 1.32922 1.09011 0.85294 0.79363 0.78333 0.77143 1.20364 1.22223 1.19862 1.21231 0.98242 0.91733 0.85907 1.22540 0.96806 0.93945 0.83464 0.91186 1.86392 1.61552 1.62258 1.27803 1.73747 0.98086 1.15544 1.21855 1.84766 1.11034 1.33777 1.67860 0.88146 0.87767 0.87709 0.81163 0.88662 0.88881 0.86293 0.86824 0.74680 0.90344 0.91220 0.97592 0.91477 0.93909 0.91099 0.98906 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 71.24 0.74 0.17 16 2 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.23 -5.08 10.45 22.40 0.23 -4.84 16 4 C 0.01 0.14 7.28 43.58 0.32 0.46 16 5 C 0.14 2.50 6.56 71.24 0.47 2.96 16 6 O -0.39 -8.78 9.37 -129.94 -1.22 -9.99 16 7 C 0.05 0.90 6.42 71.23 0.46 1.36 16 8 C 0.51 14.10 7.87 87.65 0.69 14.79 16 9 O -0.58 -22.31 16.16 15.98 0.26 -22.05 16 10 N -0.70 -18.05 4.92 -442.40 -2.18 -20.23 16 11 C 0.17 5.88 2.12 45.02 0.10 5.98 16 12 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 13 C -0.12 -4.17 5.65 30.67 0.17 -4.00 16 14 C 0.14 5.88 6.52 86.36 0.56 6.45 16 15 N -0.60 -29.41 2.99 -699.10 -2.09 -31.50 16 16 C -0.27 -14.02 9.58 84.03 0.81 -13.21 16 17 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 18 C -0.05 -2.60 4.92 84.86 0.42 -2.19 16 19 N -0.94 -53.58 11.20 21.65 0.24 -53.33 16 20 Si 0.97 42.89 29.59 68.60 2.03 44.92 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.16 7.21 4.92 86.36 0.42 7.64 16 25 C 0.09 3.27 3.14 30.67 0.10 3.36 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 O -0.57 -17.94 13.16 -148.98 -1.96 -19.90 16 28 N -0.38 -9.01 12.07 -49.55 -0.60 -9.60 16 29 O 0.09 1.89 11.20 71.59 0.80 2.69 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.17 3.88 8.05 -2.91 -0.02 3.86 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.42 7.68 8.60 -92.71 -0.80 6.89 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 43 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 44 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 45 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.39 9.60 9.08 -74.05 -0.67 8.92 16 Total: -1.00 -77.12 386.55 0.51 -76.61 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.45 Total: 23.69 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 5.67 Total: 18.71 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.62 Total: -114.67 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -2.12 Total: -49.26 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -77.12 0.51 -76.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099891052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.175 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds