Wall clock time and date at job start Tue Mar 31 2020 23:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34334 * 126.44346 * 2 1 4 4 N 1.34477 * 107.66590 * 180.02562 * 3 2 1 5 5 C 1.30248 * 108.70437 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.62368 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47058 * 90.02751 * 6 5 4 8 8 C 1.42897 * 114.00417 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47514 * 180.02562 * 8 7 6 10 10 O 1.21286 * 119.99666 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00098 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99814 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.45207 * 35.03409 * 12 11 9 14 14 C 1.53044 * 109.46096 * 275.06652 * 12 11 9 15 15 C 1.53192 * 109.30981 * 178.61762 * 14 12 11 16 16 N 1.46918 * 108.77961 * 54.63433 * 15 14 12 17 17 C 1.36942 * 120.63083 * 126.66478 * 16 15 14 18 18 H 1.08006 * 120.00049 * 331.60340 * 17 16 15 19 19 C 1.38805 * 120.00309 * 151.60628 * 17 16 15 20 20 N 1.31622 * 119.99962 * 343.11515 * 19 17 16 21 21 Si 1.86795 * 120.00332 * 163.11972 * 19 17 16 22 22 H 1.48504 * 109.47268 * 89.99585 * 21 19 17 23 23 H 1.48502 * 109.47416 * 209.99914 * 21 19 17 24 24 H 1.48507 * 109.47127 * 329.99639 * 21 19 17 25 25 C 1.46921 * 118.74128 * 306.39349 * 16 15 14 26 26 C 1.53047 * 109.46028 * 154.99971 * 12 11 9 27 27 H 1.09004 * 109.52182 * 61.41643 * 26 12 11 28 28 O 1.42900 * 109.49756 * 301.33996 * 26 12 11 29 29 O 1.33966 * 108.76162 * 0.23170 * 5 4 3 30 30 H 1.08995 * 109.47772 * 89.99895 * 1 2 3 31 31 H 1.08997 * 109.47152 * 210.00422 * 1 2 3 32 32 H 1.09006 * 109.46787 * 330.00002 * 1 2 3 33 33 H 1.08001 * 126.16900 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.46948 * 330.03226 * 6 5 4 35 35 H 1.08999 * 109.47423 * 210.02551 * 6 5 4 36 36 H 1.08999 * 109.47433 * 59.99649 * 8 7 6 37 37 H 1.09003 * 109.46606 * 300.00019 * 8 7 6 38 38 H 0.96998 * 120.00276 * 359.97438 * 11 9 8 39 39 H 1.08993 * 109.49625 * 298.56715 * 14 12 11 40 40 H 1.08994 * 109.49634 * 58.63062 * 14 12 11 41 41 H 1.08999 * 109.59077 * 294.84222 * 15 14 12 42 42 H 1.09008 * 109.58009 * 174.42595 * 15 14 12 43 43 H 0.96995 * 120.00418 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58788 * 173.39325 * 25 16 15 45 45 H 1.09005 * 109.58640 * 293.67568 * 25 16 15 46 46 H 0.96695 * 113.99987 * 180.16034 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 -0.0006 5 6 3.5765 -0.6547 -0.0004 6 6 4.8003 -1.5341 -0.0014 7 8 5.1881 -1.8123 1.3456 8 6 6.3453 -2.6430 1.4576 9 6 6.6615 -2.8707 2.9134 10 8 5.9646 -2.3703 3.7706 11 7 7.7186 -3.6303 3.2626 12 6 8.0261 -3.8510 4.6778 13 1 7.0979 -3.9104 5.2461 14 6 8.8720 -2.6888 5.2031 15 6 9.1625 -2.9058 6.6915 16 7 9.7795 -4.2279 6.8651 17 6 10.9690 -4.3608 7.5304 18 1 11.6799 -3.5476 7.5334 19 6 11.2613 -5.5405 8.2008 20 7 10.2985 -6.3917 8.4853 21 14 13.0211 -5.9203 8.6992 22 1 13.2795 -5.3761 10.0565 23 1 13.2267 -7.3910 8.7081 24 1 13.9561 -5.2957 7.7292 25 6 9.0930 -5.4054 6.3166 26 6 8.8032 -5.1604 4.8325 27 1 9.7431 -5.0931 4.2846 28 8 8.0252 -6.2409 4.3137 29 8 2.3075 -1.0840 -0.0048 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.9822 2.1113 -0.0004 34 1 5.6143 -1.0231 -0.5156 35 1 4.5758 -2.4687 -0.5152 36 1 7.1913 -2.1549 0.9737 37 1 6.1532 -3.6008 0.9738 38 1 8.2757 -4.0308 2.5770 39 1 9.8112 -2.6442 4.6519 40 1 8.3278 -1.7538 5.0707 41 1 8.2313 -2.8602 7.2561 42 1 9.8457 -2.1342 7.0467 43 1 10.5026 -7.2159 8.9541 44 1 9.7302 -6.2831 6.4245 45 1 8.1572 -5.5652 6.8523 46 1 8.4561 -7.1039 4.3814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099914284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:22 Heat of formation + Delta-G solvation = -77.266551 kcal Electronic energy + Delta-G solvation = -29023.471347 eV Core-core repulsion = 24723.211032 eV Total energy + Delta-G solvation = -4300.260315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.64067 -39.89483 -38.40089 -37.43027 -35.28546 -35.04225 -34.33176 -33.11537 -32.23638 -30.30989 -29.44274 -28.89643 -27.45148 -25.51469 -24.85515 -22.64284 -22.49177 -21.82336 -21.42591 -20.34237 -19.50150 -17.85592 -17.57212 -17.13382 -16.70966 -16.67350 -16.48788 -16.36399 -15.57950 -15.11384 -14.92749 -14.78861 -14.25566 -14.00233 -13.81087 -13.66772 -13.52940 -13.40985 -13.28732 -12.84168 -12.71777 -12.47886 -12.26348 -12.18412 -11.92443 -11.68812 -11.61712 -11.22871 -10.84865 -10.84624 -10.78483 -10.41896 -10.23569 -10.17861 -10.02890 -9.83649 -9.53662 -9.35515 -9.05913 -8.77564 -8.54552 -6.78508 -5.88269 -3.32154 0.98448 2.09192 2.34363 2.75434 2.94610 3.31871 3.39367 3.41118 3.58123 4.10659 4.35015 4.39955 4.53941 4.59323 4.62150 4.70089 4.81693 4.89983 4.94335 4.96120 5.06116 5.17130 5.28796 5.38170 5.45198 5.49567 5.58656 5.69935 5.90264 5.94565 5.99785 6.07442 6.20911 6.43721 6.45037 6.53635 6.70734 6.83489 6.91092 7.10575 7.39698 7.44089 7.68244 7.72106 8.07313 8.34959 8.40251 9.10220 9.72924 10.29451 11.20219 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.001826 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.316505 B =15333.497474 C =15502.908765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.040 4.040 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.189 3.811 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.046 3.954 9 C 0.512 3.488 10 O -0.521 6.521 11 N -0.713 5.713 12 C 0.164 3.836 13 H 0.088 0.912 14 C -0.139 4.139 15 C 0.144 3.856 16 N -0.589 5.589 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.148 3.852 26 C 0.073 3.927 27 H 0.053 0.947 28 O -0.573 6.573 29 O -0.194 6.194 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.397 0.603 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.255 0.745 44 H 0.093 0.907 45 H 0.030 0.970 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 7.479 -21.670 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.189 5.189 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.273 6.273 8 C -0.034 4.034 9 C 0.296 3.704 10 O -0.396 6.396 11 N -0.365 5.365 12 C 0.061 3.939 13 H 0.106 0.894 14 C -0.180 4.180 15 C 0.017 3.983 16 N -0.313 5.313 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.021 3.979 26 C 0.012 3.988 27 H 0.070 0.930 28 O -0.378 6.378 29 O -0.081 6.081 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.048 0.952 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.451 8.537 -20.897 26.277 hybrid contribution 1.061 -1.344 -0.084 1.714 sum -12.390 7.194 -20.981 25.406 Atomic orbital electron populations 1.20312 0.83732 1.04739 1.03844 1.23585 0.95207 0.84534 1.05977 1.23131 0.87584 1.00528 1.07160 1.70410 1.23319 1.09050 1.16121 1.25515 0.83887 0.89932 1.02465 1.20476 0.89042 0.96396 0.85763 1.88090 1.45669 1.69827 1.23708 1.22296 0.89252 0.95826 0.96015 1.20028 0.81036 0.79387 0.89971 1.90751 1.48947 1.48375 1.51506 1.45968 1.29746 1.51473 1.09317 1.21009 0.99231 0.93652 0.80054 0.89372 1.22418 0.99039 0.96910 0.99618 1.20948 0.96616 0.89140 0.91553 1.44015 1.23299 1.00586 1.63384 1.19194 0.92459 1.01171 1.25686 0.91380 1.25095 0.97675 0.99189 0.97667 1.70025 1.30199 1.11849 1.42559 0.86284 0.84542 0.77289 0.78575 1.21259 1.21530 1.20432 1.21410 0.97201 0.92505 0.86774 1.22978 0.91923 0.85294 0.98620 0.92953 1.86410 1.48237 1.18483 1.84664 1.84390 1.17709 1.36619 1.69339 0.89671 0.90077 0.88728 0.79692 0.88419 0.89905 0.89723 0.89758 0.76927 0.91951 0.91735 0.95816 0.92054 0.93473 0.88855 0.95198 0.77714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.43 36.00 0.38 0.04 16 2 C -0.04 -0.37 7.39 -35.69 -0.26 -0.64 16 3 C -0.04 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.46 -5.93 11.29 -11.10 -0.13 -6.06 16 5 C 0.19 2.28 7.97 -12.95 -0.10 2.18 16 6 C 0.16 1.49 6.56 36.01 0.24 1.73 16 7 O -0.36 -4.69 9.86 -55.14 -0.54 -5.23 16 8 C 0.05 0.48 6.42 36.01 0.23 0.71 16 9 C 0.51 7.85 7.87 -10.99 -0.09 7.76 16 10 O -0.52 -10.68 16.16 -14.36 -0.23 -10.91 16 11 N -0.71 -10.22 4.92 -53.76 -0.26 -10.49 16 12 C 0.16 2.93 2.12 -67.89 -0.14 2.79 16 13 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 14 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 15 C 0.14 3.05 6.51 -3.72 -0.02 3.03 16 16 N -0.59 -14.32 2.99 -172.33 -0.52 -14.83 16 17 C -0.26 -6.78 9.58 -15.06 -0.14 -6.93 16 18 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.39 11.20 55.49 0.62 -24.77 16 21 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.15 3.38 4.92 -3.72 -0.02 3.37 16 26 C 0.07 1.32 3.14 -26.61 -0.08 1.24 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 O -0.57 -9.44 13.16 -35.23 -0.46 -9.91 16 29 O -0.19 -2.29 10.78 5.36 0.06 -2.23 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.40 4.43 8.60 -40.82 -0.35 4.08 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.25 7.93 -51.92 -0.41 0.84 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.38 4.91 9.08 45.56 0.41 5.33 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -36.82 387.78 -7.22 -44.05 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.10 Total: 6.70 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -0.47 Total: 11.92 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.28 Total: -56.15 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.18 Total: -28.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.82 -7.22 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099914284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.221 kcal (2) G-P(sol) polarization free energy of solvation -36.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds